KEGG   Pseudodesulfovibrio profundus: DPRO_0901
Entry
DPRO_0901         CDS       T05258                                 
Symbol
ligA
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
pprf  Pseudodesulfovibrio profundus
Pathway
pprf03030  DNA replication
pprf03410  Base excision repair
pprf03420  Nucleotide excision repair
pprf03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pprf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DPRO_0901 (ligA)
   03410 Base excision repair
    DPRO_0901 (ligA)
   03420 Nucleotide excision repair
    DPRO_0901 (ligA)
   03430 Mismatch repair
    DPRO_0901 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pprf03032]
    DPRO_0901 (ligA)
   03400 DNA repair and recombination proteins [BR:pprf03400]
    DPRO_0901 (ligA)
Enzymes [BR:pprf01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     DPRO_0901 (ligA)
DNA replication proteins [BR:pprf03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     DPRO_0901 (ligA)
DNA repair and recombination proteins [BR:pprf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     DPRO_0901 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     DPRO_0901 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     DPRO_0901 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      DPRO_0901 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT PTCB-BRCT DNA_ligase_ZBD HHH BRCT_2 HHH_3 NDUS4
Other DBs
NCBI-ProteinID: SOB57792
UniProt: A0A2C8F6X8
Position
DPRO:complement(903277..905301)
AA seq 674 aa
MVSSDVAQRVASLRATIEYHDHRYYVLDDPEITDAEYDALYRELVALEEAHPELDDAHSP
TKRVGGEPAVGFTPYEHAMRMYSLDNAMNIEEWFTFTDRVAKGIGRPDAEYWTDPKMDGL
AVEVIYEQGKYVKAATRGDGFVGEEVTHNMRTLMNLPLKLRGDNIPRLLEVRGEVVMSNK
DFAQLNDRQRKAGNKVFANPRNAAAGTIRQLDPKVAASRPLRFMAYGIGRVEWSAPLFGW
TSQKDIMEGLQSLGFSIPPEAKLCSSKQEVADYYQQLMEQRASLPFEIDGVVAKLNNLDM
QSALGFTSRAPRWALALKFPALQAKTVLKSIRIQVGRTGVLTPVAELEPVHLAGVIVSNA
TLHNKGYIVERDFRLGDTVLIQRAGDVIPQVLSVDLDQRPDNSEPYEFPMVCPVCDSEAI
EDGEAVRCTNPACPAKTVQQLIHFVSKAGLDMDGVGKKWVERLALDGVLDTPADLFTLHS
TDLLKYGGMGSKSADKFIAAIEKSKQNAPLWRLIAGLGIRHVGEQTARVLADNYADLDAI
AAASVDDLQQLNDIGSVVAESVVEYFTSARAEELFARFKDVGFWPTAEGKKESVGDLPLA
EKVFIFTGSLPGMTRDQAQQLVEEKGGRSVKGISKKVDYVVAGEKAGSKIAKAEKLGLTV
LDFDEFMQLLDDSK
NT seq 2025 nt   +upstreamnt  +downstreamnt
atggtttcctctgacgtcgctcagcgcgttgcttcgttgcgcgcaactatcgaatatcac
gatcacagatactacgttcttgatgatccagaaataacagatgccgagtacgatgctttg
taccgtgaactcgtagccttggaagaggcgcatcccgaactggacgatgcgcattctcct
accaaacgtgttggtggcgagccagctgtcggcttcactccgtacgagcatgcaatgcgc
atgtacagtctggataacgccatgaacatcgaagagtggttcacgtttacagacagggtt
gccaagggcattggtcgacctgatgcggaatactggaccgacccgaagatggatggtctg
gcggtcgaggtgatctacgagcagggaaagtatgtgaaggctgccacacgtggtgatggc
tttgtgggtgaggaagtcacgcacaacatgcgcacactgatgaatctcccgctgaagctg
cggggtgacaacattccccgcctgttggaggttcggggtgaagttgtcatgtccaacaag
gattttgcccagctcaatgatcgtcaacgcaaggctggtaataaggtctttgccaatccg
agaaacgcagcggcaggcaccatacgtcagcttgatcccaaggttgctgcgtcgcgaccc
ctgcgcttcatggcgtatggaatcggacgagttgagtggagcgctccgttgttcggctgg
acgagtcagaaggatattatggaagggcttcagtctcttggattctccattccgccggaa
gcaaaactctgttcgtcgaagcaggaagtcgctgattattaccagcagctcatggagcaa
cgggcatcacttccttttgaaattgatggagtcgtcgccaagctgaataatctggatatg
cagagtgctcttggttttacctcgcgtgcgccgcggtgggcgttggctttgaaatttccg
gcattgcaggcaaagactgtcttgaaatccattcgtatccaggtggggcgaaccggagtt
ctgacgccggttgctgaactggagccggtgcacctcgcgggtgttatcgtttccaacgcc
acactccataataaaggatacatagtggagcgtgacttccgccttggcgatactgttctc
attcagcgggcaggggatgtcattccgcaggtactgtctgttgacctcgatcagcgtccc
gacaattctgaaccctatgaattccccatggtctgtcctgtctgtgatagcgaggctatc
gaagacggtgaggctgttcgctgtaccaaccctgcctgtccggccaaaacggttcagcaa
ctcatccactttgtctccaaagccggactcgatatggatggtgtcggcaaaaaatgggta
gaacggcttgctttggatggggtcctcgacaccccggccgacctgtttaccttgcactca
actgatctgcttaaatatggcgggatgggaagtaaatctgctgacaagtttatcgcagcc
atcgagaaatcaaaacaaaacgctccgttgtggcggttgatagcagggttgggaattcga
catgtcggagaacagacggctcgtgtgctggctgataattatgctgaccttgatgccatt
gcagccgcttcagttgatgacctccagcaactcaacgatattggttctgttgtggccgag
agtgtggtcgagtatttcacctcggcccgtgctgaagagttgtttgctcgtttcaaggat
gttggattttggcctacggctgaaggaaagaaagagagcgttggagacttgccactggcc
gagaaagtcttcatctttaccgggtcccttccgggcatgacacgcgaccaggcccagcag
ttggtcgaagaaaagggagggcgatcggtcaaagggatttctaaaaaggtcgattatgtt
gttgccggtgaaaaggccggctccaagatagccaaggctgagaagctcggactgaccgta
cttgatttcgatgaattcatgcagttattggatgattcgaagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (31)   

Download RDF
DBGET integrated database retrieval system