KEGG   Pseudodesulfovibrio profundus: DPRO_1040
Entry
DPRO_1040         CDS       T05258                                 
Symbol
hsdR
Name
(GenBank) endonuclease R
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
pprf  Pseudodesulfovibrio profundus
Brite
KEGG Orthology (KO) [BR:pprf00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:pprf02048]
    DPRO_1040 (hsdR)
Enzymes [BR:pprf01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     DPRO_1040 (hsdR)
Prokaryotic defense system [BR:pprf02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   DPRO_1040 (hsdR)
SSDB
Motif
Pfam: EcoEI_R_C ResIII SWI2_SNF2 Helicase_C HSDR_N DEAD DUF4145 AcnX Thymopoietin
Other DBs
NCBI-ProteinID: SOB57927
UniProt: A0A2C8F5D1
Position
DPRO:complement(1056160..1059543)
AA seq 1127 aa
MPDESTAFQSPNFWFLADHDQLLLKCAAQAERLVFFDPNAALSKIRLFSELLAKQVAVRS
AIPLYEGDTAIRVLQRLDDEGVFTAKVNQIFHMLRKAGNIAVHDLGGESKHALDALRFAR
ILAIWFHQAFGKDTAFDPGAFLPPPKPKVVDDSLSDELDELRKKLAKTEKAQLEAQRKAD
AAYDKLAKTKELLKDTEEQQRQEQALFVERLADLQASVATQSSEEINTTKATLKKVAESS
VDLDEKDTRKLIDDQLRDAGWEADSERLSYKAGVRPQKGKNLAIAEWPTKHPETGKRNWA
DYVLFIGLTPVATVEAKRRRKNVSAALKQAQRYSKGYIIQCDEKLPEESPWGEHVIPFLL
SSNGRPFLKQLRTKSGVWFRDVRVPTEIARPLTTWPTPEGLVGLLRQDIPEANDALKKAP
SDYLDLRYYQYDAIHAIENEIAKGKREIMTAMATGTGKTRTCIGLAYRLCKAKRFRRILF
LVDRTSLGEQTSGAFKDVRVEGHDTFASVYDIKELGDIKPEKDTRLQIATIQGMIKRLLF
PSEGELPMPVDQYDCVIVDECHRGYNLDKEMSDTELKFRNQNDYVSKYARVLDHFDAVKI
GLTATPALHTTELFGEPVYNYSYRQAVIDGFLVDHEPPVRIRTKLSEEGIKWNKGEEAET
IDSITGEVGKWHFKDEVEFDVEEFNKQVLTESFNRVVCEQVAQHIDPSFEGKTLVYCVTD
NHADMVVDLLKQAFVNQYGSIEDDAVVKITGQADKPLELIRHFKNEQLPNVVVTVDLLTT
GIDVPKITNLVFIRRVKSRILYEQMLGRATRLCEEIGKDWFRIFDAVDLYSALQKYSDMK
PVVTTVTVSFGELLRELEKAQDDEVRQVIVNQYRAKFQRKKRLLKDDALDKFVTMTGKEP
QAFADDLGERPLGDVVNDLLALQKLAPFLDNLKPPNKVHLISDHEDELRGVERGYGDAEK
PEDYLESFKQFIQANKNQVAALKIVLQRPRELTRQQLKELRLFLDEHEYTEVNLRTAWRE
ATNHDIAASIIGFIRRLALGSPLVPYEQRVEQAMKRILASRQWTDPQRKWLERIGKQMRA
ETIVDRESLDGGEFQAHGGFNRLNRVFGGKLEDVLGEINESLWDEAG
NT seq 3384 nt   +upstreamnt  +downstreamnt
atgcctgacgaatcgacagccttccaatctcctaatttctggttcttagctgatcacgac
cagcttctgttgaagtgtgccgcgcaagccgagcgccttgtcttttttgacccgaatgcg
gccctttccaaaattcgtctttttagtgaattgctggctaagcaggtggcagtccgttct
gccattcctttgtatgaaggcgacacggctatccgagtcttgcagcgtcttgacgacgag
ggagtcttcaccgccaaggtaaatcagatttttcacatgctccgcaaggcgggcaatatc
gccgtacatgatctgggtggggagtccaagcatgctctagatgcgctccggttcgccaga
atacttgccatttggtttcatcaggcgttcggcaaagatacggcctttgaccctggtgca
ttcctaccaccaccaaaacccaaagtggtggacgactccctttccgacgaattggatgag
cttcgaaagaagctcgccaaaacagagaaggctcagcttgaagcgcaacgcaaggccgat
gccgcatatgataaactggcgaagaccaaagagctgctcaaagacaccgaggagcaacag
aggcaggaacaggctctatttgttgaacggcttgctgacttgcaggccagtgttgccacc
cagagcagcgaagagattaacacaaccaaagccaccctcaagaaggtagcagagtcttct
gtcgatcttgacgaaaaagatacccgtaaactcattgacgatcagctcagggatgccggc
tgggaggctgacagcgaacgcctttcatataaggctggcgtccgccctcaaaaaggaaag
aatctcgccattgccgagtggcccacaaagcaccctgaaaccggtaaacgcaattgggct
gattatgtcctattcataggcttaactcctgtggctaccgtcgaggcaaagcgcaggcgc
aagaatgtttccgcagctttgaagcaggcgcaacgctacagcaaggggtacatcatccag
tgtgatgagaagcttcctgaagagtcgccttggggtgagcatgtcatcccgttcttgctc
tcttcaaatggtcgcccgttcctcaagcaacttcgcaccaaaagcggcgtctggttccgt
gatgtccgtgtgccaactgaaatcgctcgtccgttgaccacttggcctacgcctgaaggg
cttgtcggcctgttgagacaggatattcccgaggcaaacgacgcactgaaaaaagcccct
tctgactatttggacctgcgctactatcagtatgatgcaatccatgcgattgagaatgag
attgccaaaggtaagcgtgaaatcatgacggccatggctaccggaaccggcaagacgcgt
acctgcattgggttggcctaccgcctatgtaaggccaagcggttccgtcgcatccttttc
ctggtcgacagaacgtctttaggggagcagacatctggtgccttcaaagatgttcgagtt
gagggtcacgacacctttgccagcgtgtacgacatcaaagagcttggagacatcaagcca
gagaaagatactcgactccagattgctaccatccagggcatgattaagcggctcctcttc
ccgtctgaaggcgaattgcctatgcccgttgatcaatacgattgcgtcatcgtcgacgag
tgccaccgtggttacaatctcgataaagagatgagcgatactgagctgaaattcaggaat
cagaatgattatgtatcgaaatacgctcgcgtgctggatcacttcgacgctgtaaaaatc
gggcttacggccactcctgcccttcacacaacagagctgttcggtgagccggtttacaat
tattcctataggcaggcagtcattgatggattcctcgtcgaccatgagcctcctgtgcgg
atacggaccaaactgagcgaggaaggtatcaagtggaacaagggcgaagaggctgaaaca
atcgactccattaccggagaagtcgggaaatggcacttcaaggatgaagttgaattcgat
gtcgaagagttcaataaacaggtcctgacagaatctttcaacagagtagtctgcgaacag
gtggctcaacatatagacccatctttcgaggggaaaacccttgtctattgcgtgaccgac
aatcatgccgacatggtcgtagatctcctcaagcaagccttcgtcaatcagtacggctca
attgaagacgatgctgttgtaaagatcaccggacaagcggacaagcctttggagcttatt
cggcatttcaagaatgaacagcttcctaatgtcgttgtcaccgttgacctactgaccacc
ggcattgacgttcccaagataacaaacctcgttttcatccgacgcgtaaagagccgtatt
ctctatgagcagatgcttggtcgagccacccggttgtgtgaggagatcggcaaggattgg
ttccgtatctttgacgctgttgacctgtactccgcattgcaaaaatattcggacatgaag
ccggttgttaccactgtgactgtttcatttggtgaactcttgcgtgagttggaaaaggcg
caggatgacgaggtgcggcaggtcatagttaatcaatacagagccaagtttcagcgaaag
aagcggctcttaaaagatgacgcgctcgataaatttgtcaccatgaccggcaaagagcct
caggcttttgccgatgacttaggcgagcgcccgcttggtgatgttgtaaacgatctgttg
gcactccaaaagcttgctcctttcctggacaatttgaagcctccgaacaaggtacatctt
atctctgaccatgaggacgaattacggggcgtcgagcggggttatggcgatgccgagaag
ccggaagattatctggagtccttcaaacagttcatccaggccaataagaatcaagtggca
gcgttgaaaattgtcctccagcgcccacgcgagttgacccgacagcagctcaaggaatta
cgcttattccttgacgagcatgagtatactgaggtcaacctacggacggcgtggcgggag
gctaccaaccacgatattgcggcctctattatcggctttatccgacgccttgcactgggt
tccccgctggtgccttatgagcagcgtgtcgagcaggccatgaagcgtattcttgccagc
cgccagtggactgatccacagcggaaatggttggaacggatcggtaaacagatgcgggct
gaaaccatcgtagaccgtgagtctctggatggtggcgagttccaggcacatggcggcttt
aatcgcttgaaccgtgtttttggcggcaaattggaagatgttttaggagaaatcaacgaa
agcctttgggacgaggctggttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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