KEGG   Pseudomonas putida S16: PPS_4737
Entry
PPS_4737          CDS       T01570                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
ppt  Pseudomonas putida S16
Pathway
ppt02024  Quorum sensing
ppt03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ppt00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PPS_4737
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    PPS_4737
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ppt03019]
    PPS_4737
   03036 Chromosome and associated proteins [BR:ppt03036]
    PPS_4737
Messenger RNA biogenesis [BR:ppt03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     PPS_4737
Chromosome and associated proteins [BR:ppt03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    PPS_4737
SSDB
Motif
Pfam: Hfq LSM Gag_p24_C
Other DBs
NCBI-ProteinID: AEJ15268
UniProt: F8FSZ0
Position
complement(5357084..5357311)
AA seq 75 aa
MNTLRKEKVPVSIYLVNGIKLQGSIESFDQFVVLLKNTVSQMVYKHAISTVVPARPVRLP
SPSDSEHGDSEPGNA
NT seq 228 nt   +upstreamnt  +downstreamnt
ttgaacaccttgagaaaagaaaaggtcccggtatccatctatctggtcaacggcatcaaa
ctgcagggttcgatcgagtccttcgaccagttcgtggtactgctgaagaacaccgtcagc
cagatggtctacaagcacgccatctcgaccgtggttcctgcccgtccggttcgtctgcca
agcccgtccgattccgaacatggcgacagcgagccaggcaacgcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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