KEGG   Pandoraea pulmonicola: RO07_02730
Entry
RO07_02730        CDS       T03553                                 
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
ppul  Pandoraea pulmonicola
Pathway
ppul03030  DNA replication
ppul03430  Mismatch repair
ppul03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ppul00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    RO07_02730
   03430 Mismatch repair
    RO07_02730
   03440 Homologous recombination
    RO07_02730
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ppul03032]
    RO07_02730
   03400 DNA repair and recombination proteins [BR:ppul03400]
    RO07_02730
Enzymes [BR:ppul01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     RO07_02730
DNA replication proteins [BR:ppul03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     RO07_02730
DNA repair and recombination proteins [BR:ppul03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     RO07_02730
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon DNA_pol_IIIA_C HROB tRNA_anti_2
Other DBs
NCBI-ProteinID: AJC19671
UniProt: A0A378Z9D2
Position
complement(4575860..4579432)
AA seq 1190 aa
MSEPRFVHLRLHSEYSIADGIVRLDDIVKAAAKDGQGALALTDLANMFGAIRFYKEARGK
GVKPIIGCDAWITNPADRDKPTRLLLLARNKQGYLNLCQLLSKAWLGNQWRGRAELEASW
LQADGLAAGLLALSGAQMGDVGAALAAGNPALALQCAQHWASVFPGAYYIELQRTGQPGM
EAYVQQAVQLAAKAGLPVVATHPIQFMTADDFTAHEARVCISEGEILGNARRVRRFTQDQ
RFRTQDEMIAAFEDVPSAIANSVQIAKRCNVTLELGKPKLPLFPTPDGMSLDDYLVHLSK
EGLETRLAQLFPDEAERDKQRTDYYKRLDFETGTIIKMGFPGYFLIVADFIQWAKNNGVP
VGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSMPDFDIDFCQDGRDRVIQY
VKEKYGADAVSQIATFGSMAAKAAVRDVGRVLDLGYNFVDGISKLIPFKPGKLVTIDDAL
KEEPQLAERYQTEDEVKQLIDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGTGE
DASGVVSQYDKDDVEAVGLVKFDFLGLTTLTILNWAERYIKRLHPEMADWSLDQVPLTDP
AAFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKH
GREKVEYPDPRVEPVLQETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKAEEMA
QHREIFAQGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAA
FMAANMSLAMDDTDKVKILYDDCLANGLGVLPPDVNVSAYRFEPADTKTVRYGLGAIKGS
GQSAIEEILRAREGKPFTDLFDFCARIDRRVVNRRTIEALIRAGAFDSIHDNRAQLMVSV
PLAMEAAEQASAAANQVSLFDLGDESLQAPLELADEPAWTDKRKLQEEKQALGFYLSGHM
FDSYAEEVRRFVRTRIRDLSDGRDKLVAGVISSLRTMMTQRGKMVIVQLDDGTGTLEATI
FNEQFEANKHLFKEDELLIVQGNARPDSFTGGLRFTTESVMDLGRARARFARALKLSFNG
NADWTRLRATLQPHCTMYRVAATTNAGNGFNGGGGGGYNGGGGGGGFGRRNGNGNDDGDK
QTGLPVHIVYRRPDAECESRLGDDWKVQPGDELLGELRQWLTPDSVQVIY
NT seq 3573 nt   +upstreamnt  +downstreamnt
atgtcagaaccccgcttcgtccacctccgtcttcactccgaatattcgatcgccgatggc
atcgtgcggctcgacgacatcgtcaaggccgccgccaaggacggtcagggcgcgctcgcg
ctgaccgatctcgcgaacatgttcggcgccatccgtttctacaaggaagcccgcggcaag
ggcgtcaagccgatcatcggctgcgacgcctggatcacgaatcccgccgatcgcgacaag
ccgacgcggctgctgctgctcgcgcgcaacaagcaaggctatctgaacctgtgccagttg
ctttccaaggcgtggctgggtaaccagtggcgcgggcgcgcggagctcgaagcgtcgtgg
ctccaggcggacggtctcgccgccggcctgctggccctgtccggggcgcagatgggcgat
gtcggcgcggcgttggccgccggcaacccggcgctggcgctgcagtgcgcgcagcactgg
gcgagcgtatttccgggggcgtactacatcgagctgcagcgcacgggccagcccggcatg
gaagcctacgtgcagcaggcggtgcaactggccgcgaaggcgggcctgccggtcgttgcc
acgcatccgatccagttcatgacggccgacgatttcaccgcgcacgaagcgcgcgtgtgt
atctcggagggcgaaatcctcggcaatgcacgacgtgtacgccgcttcacgcaggatcag
cgtttccgcacgcaggacgagatgatcgccgcgttcgaggacgtgccgtcggcgattgcc
aacagcgtccagatcgccaagcggtgcaacgtcacgctcgagctcggcaagccgaagctg
ccgctgttccccacgccggacggcatgtcgctcgacgactatctcgtgcatctgtccaag
gaagggctggagacgcgtcttgcgcagctcttccccgacgaagccgagcgcgacaagcag
cgcaccgattattacaagcggctcgacttcgagaccggcacgatcatcaagatgggcttc
cccggctacttcctgatcgtggccgacttcatccagtgggcgaagaacaacggtgtgccg
gtcggcccaggccggggctcgggggcaggctcgctcgtcgcctacgcgctcggcatcacg
gacctcgacccgctcaagtacaacctgctgttcgagcgcttcctgaatccggaacgtgtg
tcgatgcccgacttcgacatcgacttctgccaggacgggcgcgatcgcgtcatccagtac
gtgaaggagaagtacggcgcggacgccgtgtcgcagatcgccaccttcggttcgatggcg
gccaaggcggccgtgcgcgacgtcggccgtgtgctcgatctgggctacaacttcgtcgac
ggcatctccaagctgattccgttcaagccgggcaaactcgtcacgatcgacgacgcgctc
aaggaagagccgcaactcgccgagcgctatcagacagaagacgaggtcaagcagctcatc
gacctggcgcaacgtgtggaaggcctcacccgtaacgtcggcatgcacgcgggcggcgtg
ctgatcgccccgggcaagctcaccgacttctgcccgctctacacgcagggcacgggcgaa
gacgccagtggcgtggtgagccagtacgacaaggacgacgtggaagccgtcggcctcgtg
aagttcgacttcctgggcctgaccacgctcacgatcctgaactgggccgagcgctacatc
aagcgtctgcatccggaaatggcggactggtcgctcgatcaggttccgctcaccgatccg
gccgcgttcagcatcctcaagaaagccaatacggtggcggtgttccagctggaaagccgc
ggcatgcagggcatgctcaaggacgcacagcccgaccgcttcgaggacatcatcgcgctc
gtggcgttgtatcgcccagggccgatggacctgattccgagcttctgcgcgcgtaagcat
ggccgcgagaaggtggaatatccggacccgcgcgtcgagccggtgctccaggagacctac
ggcatcatggtctaccaggagcaggtgatgcagatggcgcagatcatcggcggatattcg
ctcggtggcgccgacctgctgcgtcgcgcgatgggcaagaagaaggccgaagaaatggcg
cagcaccgcgagattttcgcgcagggcgctgccaagaacggcctctcgcgcgagaagtcc
gacgaaatcttcgacttgatggagaagttcgcgggctacggcttcaacaagtcgcacgcg
gccgcgtacgccctgctggcgtactacaccgcatggctcaaggcgcaccatcccgccgcg
ttcatggccgccaacatgagcttggccatggacgacacggacaaggtcaagattctttac
gacgactgcctggccaacggtctgggcgtcctgccgccggatgtgaacgtctcggcctac
cgtttcgagccggccgacacgaagaccgtgcgctatggtctgggggcgatcaagggcagc
ggtcagtcggccatcgaagaaatcctgcgggcgcgcgaaggcaagccgtttaccgatctg
ttcgacttctgcgcgcgcatcgaccgccgcgtggtgaatcgtcgcaccatcgaagcgctg
attcgcgccggtgcgttcgactcgatccacgacaaccgtgcacaactgatggtctcggtg
ccgctcgcgatggaagcggccgaacaggcgagcgcggcggctaatcaggtgagcctcttc
gatctcggcgacgagagcctgcaagcgccgctggaactggcggacgagccggcatggacc
gacaagcgcaagctgcaggaggaaaagcaggcgctcggtttctacctgtcggggcacatg
ttcgattcgtacgcggaggaagtgcggcgcttcgtgcgaacgcgcattcgcgacctgtcc
gacggacgcgacaagctcgtggccggcgtgatctccagcttgcgcacgatgatgacgcag
cgcggcaagatggtgatcgtgcagctcgacgacggcaccggcacgctcgaggccaccatc
ttcaacgagcagttcgaggcgaacaagcacctgttcaaggaagacgagttgctgatcgtg
cagggcaatgcgcgccccgacagtttcacgggcggcttgcgtttcacgacggaaagcgtg
atggatctcggccgggcgcgtgcgcgattcgcgcgcgccctcaagctctcgttcaacggc
aatgccgactggacgcgccttcgcgccaccctgcaaccgcactgcacgatgtatcgcgtg
gcggccacgacgaatgccggcaacgggttcaatggcggcggtggcggcgggtataacggt
ggcggtggaggtggcggcttcgggcgccgcaatggcaacggcaacgacgatggcgacaag
cagaccggtctgccggtgcatatcgtgtatcgccgtcccgacgccgaatgcgagtcgcgt
ctgggcgacgactggaaggtgcagcccggcgacgaactgctcggcgaactccgccagtgg
ctcacgcccgattcggtacaggtgatctactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (21)   

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