KEGG   Pseudomonas putida NBRC 14164: PP4_06730
Entry
PP4_06730         CDS       T02707                                 
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V alpha subunit
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
ppun  Pseudomonas putida NBRC 14164
Pathway
ppun03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ppun00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    PP4_06730 (recD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppun03400]
    PP4_06730 (recD)
Enzymes [BR:ppun01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     PP4_06730 (recD)
DNA repair and recombination proteins [BR:ppun03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     PP4_06730 (recD)
SSDB
Motif
Pfam: AAA_19 AAA_30 RecD_N AAA_11 UvrD_C_2 Helicase_RecD AAA_22 Viral_helicase1 SH3_13 UvrD-helicase SLFN-g3_helicase AAA_16 AAA_28 nSTAND3 T2SSE NTPase_1 AAA_17 AAA_5 MeaB
Other DBs
NCBI-ProteinID: BAN52526
Position
798936..801011
AA seq 691 aa
MSRNLVDLLPTPLHAEHLLALAPQHDSGDLLQLLDRWVERGWLRALDRAFVSFLEERAPG
SDPLLLLAAALASHQLGHGHVCLDLQQTLAEPDFALSLPPEGDALIGPLLLPSQLLANLD
LNAWRQRIAASSLVAAGDTPGQQARPLVLSGERLYLRRYWSYERRIDHTLRQRLTQAEAP
LPDLSDRLAQLFEGGAPDGQVDWQKLACALATRAGFSIITGGPGTGKTTTVVRLLALLQG
PAVEQGRPLRIRLAAPTGKAAARLTESIGQQVERLQVSAEVRGQIPTDVSTVHRLLGSRP
GSRHFRHHAANPLPLDVLVVDEASMIDLEMMANLLDALPPRARLVLLGDKDQLASVEAGA
VLGDLCRDAEEGYYSRATAAWLEQISGESLAASGLKAGDGQRNPLAQQLVMLRFSRRFGE
GSGIGQLARLVNRQDSHAARNLLAKPPADVHSLALKHEQDRAFDRLLLDGLNRGAEGPQG
YRSYLRTLGRYRPALETAFDDPAWEQWAGKVLHSFEDFQLLCAVRRGAWGVEGLNERVAR
VLHNAGLIDSQQPWYEGRPVLVTRNDYGLGLMNGDIGIALRLPDERGEPLLRVAFPRNDG
SGGVRFVLPSRLNEVETVFAMTVHKSQGSEFSHTALVLPDALNPVLTKELVYTGITRAKH
CFSLVEPRQGIFEEAVARKVRRISGLMLEQV
NT seq 2076 nt   +upstreamnt  +downstreamnt
atgagccgaaacctggttgacctgttgcccaccccgttgcacgccgagcacttgctggcg
ctggcgccgcagcatgacagcggtgacctgctgcaactgctcgaccgctgggtagagcgg
ggctggctgcgggccctggaccgtgcgttcgtgtcgttcctcgaagagcgcgcccccggc
agtgatcccttgctgttgctggcggcagcattggccagccaccaactgggccacggccat
gtctgcctcgacctgcagcaaaccctggccgagcccgacttcgccctgtcgctgccgcct
gaaggcgatgccctgatcgggcccttgctgctgccgtcgcagttgctggccaacctcgat
ctgaatgcctggcgccagcgcatcgccgccagctcgctggtggccgctggcgataccccg
ggccaacaagcccggccactggtactcagcggtgagcgcttgtatctgcgccgttactgg
agctacgagcggcgtatcgaccataccttgcgtcagcgcctgacccaggccgaagcaccg
ctgcccgacctgtcagatcgcctggcacagctgttcgagggcggtgcaccagatggccag
gtggactggcagaagctcgcctgtgcgctggccacccgtgccggtttcagcatcatcacg
ggtggccccggcacgggtaaaaccaccaccgtggtgcgcctactggccttgctgcaaggc
ccggcggtggagcagggcaggccgctgcgcatccgcctggccgcgccgacgggcaaagcc
gctgcgcgcctgaccgaatccattggccagcaagtcgagcgcctgcaagtcagtgccgaa
gtacgcgggcaaatccccactgacgtcagcaccgtgcaccgcctgctcggcagccgcccc
ggctcccggcacttccgccatcacgccgccaacccgctgccgctggatgtgctggtggtc
gacgaagcatcgatgatcgacctggaaatgatggccaacctgctcgacgccttgccaccc
cgggcgcgtctggtgctgctgggcgacaaggaccagttggcctcggtcgaggccggtgcg
gtactgggcgacctgtgccgggatgccgaagagggttattactcgcgagcgaccgctgcg
tggctggagcagatcagtggcgagtcgctggccgccagcggcctcaaggccggtgatggg
cagcgcaatccgctggcccagcaattggtgatgctgcgcttctcacggcgcttcggcgaa
ggcagcggcatcggccagctggcgcggctggtcaatcgccaggattcccacgcggcgcgc
aacctgctggccaagccgccggccgacgtgcacagccttgccctcaagcatgagcaggac
cgtgctttcgaccgcctgctacttgacggcctgaaccgcggtgccgaaggcccgcagggc
tatcgcagctacctgcgcacccttggccgctaccggcctgcactggaaaccgcctttgac
gaccctgcgtgggaacaatgggcaggcaaggtgctgcacagctttgaagacttccagttg
ctatgcgcggtacgccggggggcctggggtgtcgaaggcctcaacgaacgggtggcccgg
gtgcttcacaatgccggccttatcgacagccagcagccctggtacgaagggcgcccggtg
ttggtgacccgcaacgactacggcctgggcctgatgaacggtgatatcggcattgccttg
cgcctgccggacgagcgcggtgagccgctgctgcgggtggccttcccgcggaacgacggc
agtggtggtgtgcgtttcgtcttgcccagccggctcaatgaagtggaaacggtatttgcc
atgaccgtgcacaagtcccagggctcggagttcagccacacggccctggtgctgccggat
gcgctcaacccggtgctgaccaaggagctggtatacaccggcatcacccgggccaagcac
tgcttcagcctggtcgagccacgccagggcattttcgaagaagcggtggcgcgcaaggtg
cggcgtatttccgggttgatgctggaacaggtgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (19)   
   Pfam (19)   
All databases (28)   

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