KEGG   Pieris rapae (cabbage white): 110996541
Entry
110996541         CDS       T05162                                 
Name
(RefSeq) THO complex subunit 2 isoform X1
  KO
K12879  THO complex subunit 2
Organism
prap  Pieris rapae (cabbage white)
Pathway
prap03013  Nucleocytoplasmic transport
prap03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:prap00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110996541
  09122 Translation
   03013 Nucleocytoplasmic transport
    110996541
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:prap03019]
    110996541
   03041 Spliceosome [BR:prap03041]
    110996541
Messenger RNA biogenesis [BR:prap03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     110996541
Spliceosome [BR:prap03041]
 Complex C
  Other components
   EJC/TREX
    110996541
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    110996541
SSDB
Motif
Pfam: Tho2 THOC2_N Thoc2
Other DBs
NCBI-GeneID: 110996541
NCBI-ProteinID: XP_045489001
Position
22:complement(5264713..5286913)
AA seq 1405 aa
MSTLTKFISEYCKTWEKSGRDSYIKLITQYIKDEGKSPLFTKSGKLSGLSQSIYDLLLSE
LKGYLKKDAVISVLREITMIHADMPSILLDVVCVLDAETSLDVQTEERSNFCYLVRELES
FLSDKLLKERLEIDTLQDVGTLKNKNFYTKFIKIKTKLYYKQRKFNLFREESEGYAKLIV
ELNQEISEGTEWKSILEIIQSLIGCFNLDPNRVLDIILESFEARPHLDKLFISLIKHYMC
DPRVISEVLGFKLGNMDVLDNYKEPPHLMTVIALLLQHQVISLDDIYPWLRPDDIIMAKE
ADKELKSVQDFLRKLNIVSTKGPQANGATEFIEEKADPQEYWSNQKLVLSEALLRVCAWS
EFSALFSRIQVSAMPPRPAKALCDMLHAVVEPLYRTKCRVAPKIMGAPIPPLKSKLGPKA
CKTFEDMKETVIPALILLGPALHHDPILMYKVIRILRTSRSAGGDPLEHESLTVLDAAIL
PALTLMEGNCCMAEEVYTLLKLYSYQCRYCLYARWKNESGEKIPSLMRVRGNSLQRIKHI
MKRVSKENIKPQGRLIGKLSHAAPAFLFDYMLLQIQTYDNLIGPVVESLKYLTSLSLDVL
GYCLVEALSAGRGIGASGAAHPPWLQALAAFAGAAFKKHNIELTGLLQFVANRLKAQQSQ
DLLILKEIVQKMAGIEAAEEMTPEQLDAMAGGELLKGEAGYFSQVRNTRRSSARLKDAVV
GNNLDIALCILSAQQRHCCVWKEGEEISGESSGSQLKVVGRLADQCQDALVQLGTFLASS
HAPDEYAARLPALPELLRDYHVDADVAFFLHRPVIAQIIAAKVESLRKASDSKLDSLEKS
ITRYSIASKEALEPIVTSITPLLPDKVWEDISPEFYVTFWSLSMYDLRVPVESYEREIDR
LKLAASAATKDSQGTKGKKEQERFNSLIEKLQDERRRQEDHVSRVHARLSRECSGWFPAR
AVKSAKNETVTRLMQLCLFPRCVFTATDALYCAQFVHTVHSLKTPNFSTLLCYDRLFCDI
TYSVMSCTEAEAGRYGQFLCRVLGTAMRWHADRASFHAECAHYPGFVTKYRVSNQFREAN
DHVGYENYRHVCHKWHYKITKAMVVCLDSGDYVQIRNALIVLIKILPHFPVLAKLAQIIE
RKIDKVKEEEKIQRPDLYVLATGYSGQLRHKAPNLMNESDFHQVVEQKPTQPVSVKEDTH
KSDTAASPVQTPESEKKESKSSDRRREEPDREKESKRESRSSNKERNKDELRSKDKSPRE
RSHREDRYLEAISPPHEHRHPSDDVDRDVKRRKVESSGNGKGSKEFEERSPEKEKRKSKL
RGDDRKERKMSRKRQDRIDESPIMEQKRRRDEQKAILKMASHQNGSQEDHHYEKYHKREK
SPFRDRSIEEPRDKHRRSNESKIRR
NT seq 4218 nt   +upstreamnt  +downstreamnt
atgagtactctgacaaaattcatatcagagtactgcaagacatgggaaaaatcaggcaga
gattcatatattaagctaatcacacaatatatcaaagatgaaggaaaaagtcccctattt
acaaagtcaggcaaattatctggcctttcacaaagtatctatgatttgttgctctctgag
cttaaaggataccttaagaaagatgctgtgatatctgtattgcgtgaaataactatgatt
catgcagatatgccatcaatattactagatgttgtttgtgttttggatgcagaaacttca
cttgatgtgcaaacagaggagagatcaaacttctgctatttagtccgagagttagaatct
ttcttatctgacaagttattaaaagaaagactagaaatagacactttgcaggatgttgga
acactaaaaaacaaaaacttttatactaaattcattaaaataaaaactaaactatattat
aagcagcgtaaatttaatctttttagagaagaaagtgaagggtatgccaaattaattgtt
gaattaaatcaagaaatttcagaaggcacagaatggaaatctattttagaaataatacaa
tcacttattggttgttttaatctagacccaaacagagttttagacatcatactggagtca
tttgaagcacgtccacatttagataaattgtttatttcgcttattaaacactacatgtgt
gatccacgagttatatcagaggttctcggattcaaacttggaaatatggatgtattggat
aactataaagaaccgccgcacttaatgactgttatagctttattattacaacatcaagtt
atttctttagatgacatatatccttggctacgtcctgatgacataataatggctaaagaa
gctgataaggaattgaaatctgtccaagattttctacgtaagcttaatatagtttccact
aaaggacctcaagcgaatggtgcaacggaatttatagaggaaaaagcagatccacaagaa
tactggtccaatcaaaagctagttcttagtgaagcgttgctaagagtatgcgcttggagt
gagttctcagcactgttcagtcgaatacaagtatcagccatgccacctcgacctgccaaa
gcattgtgcgatatgctacatgctgttgttgaaccattgtatagaacaaaatgccgtgtg
gctccgaaaataatgggtgctcctattccgccattaaaatcaaaattaggcccaaaagca
tgtaaaacattcgaggatatgaaggagacggtgataccagcgctaatcttacttggacca
gctcttcatcacgaccccattttgatgtataaggtaatacgtatattacgaacgtcccgt
tcggcaggaggcgatcccctggaacacgaatcgttgacagtattggatgcggcaatattg
ccagctcttacactcatggaaggcaactgttgtatggccgaggaggtttatacgttactc
aagttatattcataccaatgcagatactgcctatatgccagatggaagaatgaatctggt
gagaaaattccatcccttatgcgtgtcagagggaattcattacaacgcataaagcacatc
atgaaaagagtctccaaagaaaatataaagcctcaaggaagacttattggaaaattgtcg
cacgcggcgcccgctttcctcttcgattacatgcttttacagatacaaacttatgataac
ctaataggcccagtggtggaatccctcaaatacttgacgtcactgtcactagatgtcctg
ggttattgtcttgtcgaggcactgagtgcggggagaggtattggcgcaagtggtgcggca
cacccgccatggttgcaggcgttagccgcgtttgcaggcgcggcctttaagaaacataat
attgaattgacaggattattgcagttcgtcgctaatcgcttgaaggctcaacagagtcaa
gatttgctaatacttaaggagatagttcaaaaaatggctggaattgaggccgctgaggag
atgacacccgaacaattagatgccatggcgggcggcgaattacttaagggggaggcggga
tacttctcacaagtgcgaaacaccagacgatcgtcagcgaggctaaaagacgcagtcgtt
ggcaacaatttagatatagcactttgcattttgtccgcccaacaaagacattgttgtgtt
tggaaagaaggggaagaaataagcggggaatcgagtgggtctcagttaaaagtagttggt
cgtttggcggaccaatgccaggacgcgctcgttcaacttggcacgttccttgcgtcttcg
cacgcgcccgacgagtacgctgcgagattaccggctttaccggaactacttcgggactac
cacgtagacgcagatgtggcattctttctccatcgtcctgttatagctcaaataatcgct
gcgaaggtggagtctcttcgcaaagcctctgatagtaaattggattctctcgagaagagc
ataacgcggtacagcattgcctccaaggaagccctggaaccaattgtaacatcgattaca
ccactcctacccgataaagtatgggaagatatttcgcccgaattctacgtcacgttttgg
tcgctatctatgtacgatttacgcgtgccggtagagagctacgaaagggaaatagataga
ttaaagctggctgcctcggctgccaccaaggattcccaagggaccaaggggaagaaggaa
caggaacgctttaatagccttatagaaaaattacaggatgagcgtcgtcgtcaagaagac
cacgtgtcacgcgtgcacgcgcgtttgtcccgcgagtgtagcggctggttcccagccaga
gctgtcaaatctgccaaaaacgaaactgtcacgcggctgatgcaattgtgtctgtttccg
cgttgcgtgtttacggcgacggatgcattgtactgcgcccaatttgtgcatacagtgcat
tctctgaagacgccaaacttttctacgttgctgtgctatgatcggctattctgcgacatt
acgtactcagtgatgtcctgtactgaggcggaagctggcaggtacggtcagttcctttgc
cgggttttgggcacagctatgcgttggcacgcggaccgagcttccttccacgcggagtgt
gcccattacccaggctttgtgaccaagtatcgtgtttccaaccagttcagagaggcaaat
gaccacgtcggatatgagaattatagacacgtatgccacaaatggcactacaaaataacg
aaggcgatggtggtttgcctggattcgggtgactatgtccaaatacggaacgcgttgatt
gtcctcatcaagatattgccacactttccagttctcgctaaactggctcagattattgaa
aggaaaattgataaggttaaagaagaggagaaaattcaaaggccggacttgtacgtgttg
gccacgggttacagtggccaattgaggcacaaagcaccgaatctgatgaatgaaagcgat
tttcatcaagtggtagaacagaaaccaactcagcccgtcagcgtcaaagaggatactcat
aagagtgacacggccgcctcaccagttcaaactccagaaagtgagaaaaaggaatccaaa
agcagtgacagaagacgagaagaaccggatcgcgagaaggagtcaaaacgtgaatcgaga
tcgtcaaacaaagagagaaataaagatgaactacgaagtaaagacaaatcgccgagagaa
agatcccatagagaagaccgctatttggaggcaatatctccgcctcatgaacacaggcat
ccgtctgatgacgttgatcgtgatgtgaaacgacgtaaagttgaaagcagcggcaatggc
aagggtagtaaagagtttgaagaacgttcgccagaaaaagagaaaagaaagtctaaactt
agaggcgatgatcggaaagagcgtaagatgagcagaaaacggcaggatcgaattgatgag
tcacctataatggaacaaaagcgacgaagagacgaacaaaaagctattttgaaaatggcc
agtcatcaaaatggttctcaagaggatcaccactatgaaaagtatcataaaagggaaaag
tcaccattccgggatcgctcaatagaagagccaagagacaaacatagacgctcgaatgag
tcaaaaatcagaagatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (43)   
   KEGG ORTHOLOGY (1)   
   RefGene (39)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (56)   

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