KEGG   Pandoraea pnomenusa: X636_09165
Entry
X636_09165        CDS       T02950                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
prb  Pandoraea pnomenusa
Pathway
prb03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:prb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    X636_09165
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:prb03021]
    X636_09165
   03400 DNA repair and recombination proteins [BR:prb03400]
    X636_09165
Enzymes [BR:prb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     X636_09165
Transcription machinery [BR:prb03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     X636_09165
DNA repair and recombination proteins [BR:prb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      X636_09165
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 DNAPolymera_Pol RnfC_N
Other DBs
NCBI-ProteinID: AHB75605
UniProt: A0A378YPP4
Position
complement(5058067..5062173)
AA seq 1368 aa
MHYSFTEKKRIRKSFAKRPTVHKVPFLLATQLASYTSFLQADALATERKPEGLQAAFSSI
FPIVSHNGFARLEFVSYVLGTPAFDVKECQQRGLTFCSALRAKVRLVILDKESPNKPVVK
EVKEQEVYMGEIPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR
IIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFKLMPE
GAQMEFVPERLRGEVARFDITDRDGKVIVQKDKRVNAKHIRDLENANTKFISVPEDYLLG
RVLAKNVIDGDTGEVIANANDEITESVLLKLRESGVSDIQTLYTNDLDQGSYISATLRID
ETADQTAARIAIYRMMRPGEPPTEDAVEALFNRLFYSEEAYDLSKVGRMKFNRRVGRDEV
LGPMTLEDDDILATIKILVDLRNGRGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPYRKV
VDGKVTDQIDYLSAIEEGRYVIAQANASIGANGELTDELVSSREAGETLMVTPDRIQYMD
VAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKAVVGTGIERTVAVDSGT
TVQAFRGGVVDYVDAGRVVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIVRVG
DKVARGDVIADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISERVVAEDRYTSIHIE
ELNVVSRDTKLGPEEITRDISNLAEVQLSRLDESGIVYIGAEVEAGDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDDELK
GYRLDLNDQLRIVEGDAFQRLERFLVGKTANGGPKKLAKGTKITKEYLADLDRYHWFDIR
LADDEGAQQLEQIKESIEQKRHSFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRLQ
PGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADIVLNPLGVPSRMNVGQILESHLGWAA
KGLGWRIGEMLQAHTKVQEVRKFLTQIYNESGQQEDIDSLSDEEVMTLAHNLQNGVPFAT
PVFDGAHEEEIRRMLDLAFPDHIAKELGMTPSKNQVTLFDGRTGEAFERPVTCGFMHMLK
LHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVK
SDDVTGRTKVYENLVKGDHMIDAGMPESFNVLVKEIRSLGIDIDLERG
NT seq 4107 nt   +upstreamnt  +downstreamnt
atgcactattccttcaccgagaagaaacgcattcgcaagagttttgcgaagcgtccgacc
gtgcacaaggtgccgtttttgctggcaacccagctcgcctcgtacacatcgttcttgcaa
gccgacgcgcttgcaacggagcggaagccggagggtctgcaagcagccttctcctccatt
ttcccgatcgtttctcacaacgggttcgcacgcctggagtttgtcagctatgtgctgggc
actcccgcgttcgatgtcaaggaatgtcaacagcgcggcctgaccttttgctcggccctg
cgcgccaaggttcgtctggtgattctcgacaaggaatcgccgaacaagccggtcgtcaag
gaagtcaaggaacaggaagtgtacatgggcgaaattccgctcatgacgtcgacgggttcc
ttcgtcatcaatggcaccgaacgtgtcatcgtctcgcagttgcaccgttcgccgggcgtg
ttcttcgaacacgacaagggcaagacgcacagctcgggcaagctgctgttctccgcgcgt
atcatcccctaccgcggctcgtggctggacttcgaattcgatccgaaggacatcctgtat
ttccgcgtcgaccgtcgccgcaagatgccggtcacgatcctgctcaaggccatcggcctc
acgccggaacagatcctcgcgaacttcttcgtgttcgacaacttcaagctgatgccggaa
ggcgcgcagatggagttcgtgccggagcgtctgcgcggtgaagtggctcgcttcgacatc
acggatcgcgacggcaaggtcatcgtccagaaggacaagcgcgtcaacgccaagcacatc
cgcgatctggagaacgccaacaccaagtttatctcggtgccggaagactacctgctcggc
cgcgtgctcgcgaagaacgtgatcgatggcgacacgggcgaagtgatcgccaacgccaac
gacgaaatcaccgaaagcgtgctgctcaagctgcgcgagtcgggtgtgtcggacatccag
acgctgtacacgaacgatctggaccagggttcgtacatctcggccacgctgcgcatcgac
gagaccgccgaccagacggccgcgcgtatcgcgatctatcgcatgatgcgcccgggcgag
ccgccgaccgaagatgccgtcgaggccctgttcaaccgtctgttctacagcgaggaagcg
tacgacctgtcgaaggtgggtcgtatgaagttcaaccgccgtgtcggccgtgacgaagtg
ctcggaccgatgacgctggaagacgacgacattctcgcgaccatcaagatcctcgtggat
ctgcgtaacggccgtggcgaagtggacgatatcgaccacctcggcaaccgtcgcgtgcgt
tgcgtgggcgaactggccgagaaccagttccgcgccggtctcgtgcgtgtcgagcgcgct
gtgaaggaacgtctgggtcaggccgaatcggaaaacctgatgccgcacgacctgatcaac
agcaagccgatctcgtcggccattcgcgagttcttcggttcgtcgcagctgtcgcagttc
atggaccagaccaacccgctgtcggaaatcacgcacaagcgtcgtgtttccgcactgggc
ccgggcggtctgacacgcgagcgtgcaggcttcgaagtgcgcgacgtgcacccgacccac
tatggccgcgtgtgcccgatcgaaacgccggaaggtccgaacatcggtctgatcaactcg
ctggcgctgtacgcccgcctgaacgaatacggcttcctcgagacgccgtatcgcaaggtg
gtggacggcaaggtcaccgaccagatcgactacctgtcggccatcgaggaaggtcgctac
gtgatcgcccaggcgaacgcgtcgatcggcgcgaacggcgaactcaccgacgaactggtg
tcgtcgcgtgaagcgggtgaaacgctgatggtcacgccggaccgcatccagtacatggac
gtggcgccgtcgcagatcgtgtcggtggccgcctcgctgattccgttcctcgagcacgat
gacgcgaaccgcgcattgatgggttcgaacatgcagcgccaggccgtgccttgcctgcgc
ccggaaaaggcggtcgtgggtacgggtatcgagcgtaccgtggcagtcgactcgggtacg
acggttcaggcattccgcggtggcgtggtcgactacgtcgacgccggccgtgtggtgatc
cgcgtgaacgacgacgaagccgtggccggcgaagtcggcgtggacatctacaacctgatc
aagtacacgcgttcgaaccagaacaccaacatcaaccagcgcccgatcgtgcgcgtgggt
gacaaggtggcgcgcggcgacgtgatcgccgacggtgcatcgaccgatctgggcgaactg
gcgctgggtcagaacatgctgatcgcgttcatgccgtggaacggctacaacttcgaggat
tcgatcctgatctcggagcgtgtcgttgcggaagaccgttacacgtcgatccacatcgaa
gaactgaacgtggtctcgcgcgatacgaagctcggaccggaagaaatcacgcgcgacatc
tcgaacctggcggaagtgcaactgagccgtctggacgagtcgggcatcgtgtacatcggt
gcggaagtcgaagccggcgacgtgctggtgggcaaggtcacgccgaagggcgaaacccag
ctcacgccggaagagaagctgctgcgcgcgatcttcggcgagaaggcctcggacgtgaag
gacacctcgctgcgcgtgccgtcgggcatgagcggcacggtcatcgacgtgcaggtgttc
acgcgcgaaggcatccagcgcgacaagcgcgcccagcagatcatcgacgatgaactgaag
ggctaccgcctcgacctgaacgaccagctgcgtatcgtggaaggcgacgcattccagcgt
ctggagcgtttcctggtcggcaagacggccaacggcggtccgaagaagctcgccaagggc
accaagatcaccaaggaatacctggccgatctggatcgctaccactggttcgacatccgt
ctggccgacgacgaaggcgcccagcaactcgagcagatcaaggaatcgatcgagcagaag
cgtcactcgttcgacctggccttcgaagagaagcgcaagaagctcacgcagggcgacgaa
ctgccgccgggcgtgctgaagatggtcaaggtctacctggcggtcaagcgtcgtctgcag
cctggcgacaagatggccggccgtcacggtaacaagggcgtggtctcgaagatcgtgccg
atcgaggatatgccgtacatggccgacggccgtccggcggacatcgtgctcaacccgctc
ggcgtgccgtcgcggatgaacgtgggtcagattctcgaatcgcacctgggttgggccgcg
aagggtctgggctggcgcatcggcgaaatgctgcaggcgcacaccaaggtccaggaagtt
cgcaagttcctgacgcagatctacaacgagagcggtcagcaagaagatatcgacagcctg
tcggacgaagaagtgatgacgctggcgcacaacctgcagaacggcgtgccgttcgcaacg
ccggtgttcgatggtgcgcatgaagaggaaatccgtcgcatgctggatctggcgttcccg
gatcacatcgcgaaggaactcggcatgacgccgtcgaagaaccaggtcacgctgttcgac
ggccgtactggcgaagcctttgagcgtccggtgacctgcggcttcatgcacatgctcaag
ctgcaccacttggtcgacgacaagatgcacgcccgttcgaccggtccgtactcgctggtg
acgcagcaaccgctgggcggcaaggcccagttcggtggtcagcgcttcggtgaaatggaa
gtgtgggcgctggaagcttacggcgcgtcgtacgtgctgcaggaaatgctgacggtgaag
tcggatgacgtgacgggtcgtacgaaggtgtacgagaacctggtcaagggcgatcacatg
atcgatgccggcatgccggagtcgttcaacgtgctggtcaaggaaatccgttcgctcggt
atcgatatcgacctggagcgcggttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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