KEGG   Poecilia reticulata (guppy): 103479258
Entry
103479258         CDS       T05149                                 
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
  KO
K14326  regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
Organism
pret  Poecilia reticulata (guppy)
Pathway
pret03013  Nucleocytoplasmic transport
pret03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pret00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    103479258
   03015 mRNA surveillance pathway
    103479258
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pret03019]
    103479258
Enzymes [BR:pret01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     103479258
    5.6.2.5  RNA 5'-3' helicase
     103479258
Messenger RNA biogenesis [BR:pret03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     103479258
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     103479258
SSDB
Motif
Pfam: UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase ATPase nSTAND3 Helicase_RecD DEAD AAA_16 UvrD-helicase SRP54 UvrD_C_2 AAA_22
Other DBs
NCBI-GeneID: 103479258
NCBI-ProteinID: XP_008431824
Position
LG17:7980097..8009019
AA seq 1120 aa
MSVEAYGPNSQTLTFLDTEESELLGADTQGSEYDFTDFTLPSQTQTQTQTQTHSQSDNQV
SGSDVLLQNGDDPVAKASQLLAELNFEEDEEDAYYSKDLPLHACCCSVFYSWHFCSYCGI
HDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGC
RNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSE
QEQLRARQITAQQINKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGP
LVKLEADYDKKLKESQTQENITIRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKG
DLAPPWKGIGHVIKVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALK
TFAVDETSVSGYIYHKLLGHEVEDVLIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLS
LIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKS
REAIDSPVSFLALHNQTRNMESMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLM
NADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGTKQLILVGDHCQLGP
VVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAA
DRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPD
QIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQ
GIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRE
SLMQFNKPRKLVNAINPGGRFMSTAMYDAREALIPGSVYDRSSNGRPSNMYFQTHDQIGM
ICSGIGPMSSMNIPIPINLVMPPIPPPGYLGQLNGPSAGRGESMKNKSAGTSGSGTRGAR
QRNSGDVGIDGVQPGGHMTGSQASQDQGSQPFSQGPLTQGYISMSQPSQMSQPGLSQPEL
SQDSYLGDEFKSQFDVALSQDSTYQGERAYQHGVTGLSQY
NT seq 3363 nt   +upstreamnt  +downstreamnt
atgagcgtggaggcgtacgggccgaactcgcagaccctgacgttcctggacaccgaggag
tcggagctgctgggagcggacacccagggctccgagtacgacttcaccgattttaccttg
cccagccagacccagacccagacccagacccagacccacagccagtcagataaccaggtc
agcggttctgatgttttgctgcagaatggagatgaccctgtggcgaaagctagccagctc
cttgcagaattaaactttgaggaagatgaggaggatgcttactatagcaaggacctccca
ttgcatgcctgctgttgttctgttttttattcctggcatttctgtagttactgtggaatt
cacgatccagcctgtgtggtctactgcaacaccagcaagaaatggttctgtaatggccgt
ggaaatacatccggcagccacatcgtgaaccacctggtgagggccaagtccaaggaggtg
accctgcacaaagatgggcctctgggagagacggtgttggagtgctacaactgtggctgc
cgcaacgtcttcttgctgggtttcatcccagccaaggccgactcagtggtggtgttgctg
tgcagacagccgtgtgccagtcagagtagcctgaaggacattaactgggacagctcccag
tggcagccactcatccaggaccgctgcttcctgtcttggctggttaaaatcccctcagaa
caggagcagctccgggcccggcagatcaccgcccagcagatcaataagctggaggagctg
tggaaggaaaatcccactgctactctggaggacctggaaaagcctggagtggacgaggag
ccacagcacgtcctcctgcgatatgaggatgcctatcagtaccagaatatctttggtcct
cttgtaaagctggaggctgactatgataagaaactgaaagagtcacagactcaagaaaat
ataacgattagatgggacctgggcctgaataaaaaaaggattgcttatttcacccttccc
aagactgactctgatatgcgactaatgcagggtgatgaaatctgcctcagatataaagga
gacctggcccctccatggaaaggcattggacatgtcatcaaagttcctgacaactacggc
gatgagattgccattgagcttcggagtagtgctggagctccagtggaaatccctcataac
ttccaggtggactttgtgtggaagtccacctcctttgacaggatgcagagcgccctgaaa
acttttgctgtggatgagacttcagtttctggctacatctatcacaagttgctgggacac
gaggtggaggacgtgctcattaagtgccagctgcctaaacggttcactgctcaaggcctg
cctgacctcaaccactctcaggtctatgctgtgaagacggtgttgcagcgacccctcagt
ctgatccagggcccccctggcacagggaagacggtcacctcagctaccatagtgtaccat
ttggctaggcagggaaacggaccagtgctggtgtgtgctcctagtaacattgctgttgat
cagctgactgagaagattcaccagacggggctgaaggtagtgagactttgtgccaaaagc
agggaagctattgattctccggtgtctttcctggctctgcacaaccagacccggaacatg
gaaagcatgccggagctgcagaaactccagcagctgaaggatgagaccggagagctgtcg
tcctctgacgagaagcgctacagagctctgagacgcactgctgagcgggagctgctcatg
aatgccgatgtgatctgctgcacatgtgttggagcaggagatccacgtctggctaaaatg
cagttccgatctatcttgattgatgaaagcactcaggccacagaaccagagtgcatggtg
ccggttgtccttgggaccaaacagctgattctggtgggggatcactgccagctaggacct
gtggtgatgtgtaagaaggcagcaaaagcaggcctgtcccagtctctgtttgagcgcctt
gtggttctgggcatcaggcctatccgtctgcaggtccagtaccgcatgcacccggccctc
agcgcgttcccctccaacatcttctatgagggctccttgcagaatggagttactgctgct
gatcgggtgaaaaaaggctttgatttccagtggccacagccagacaagcccatgttcttc
tatgtcacccaaggccaagaggagatagcaagctctggaacatcctatctgaacagaact
gaggctgccaatgtggagaaaataaccacaaggttactgaaggctggggctaaacctgac
cagatcggcatcatcactccctatgaaggacagcggtcctacctggtccagtacatgcag
ttcagtggctccctccataccaagctctatcaggaagtggaaatcgccagtgtggatgcc
ttccaaggcagagagaaagatttcatcatcctttcctgtgtgagagccaatgagcaccag
ggcattggcttcctcaatgaccccagacgtctcaacgtggcgctcaccagggcccgatac
ggagtgatcattgtggggaatccgaaggccctgtccaagcagcctctgtggaaccacctg
ctcaactattacaaggagcagaaggttcttgtagaaggcccattaaacaacctgagagag
agcctcatgcagttcaacaagccacggaagctggtcaacgccatcaacccaggtggccgc
ttcatgagcacagccatgtatgatgccagggaggcgctgattcctggctctgtttatgac
cgcagcagcaacggcagaccttccaacatgtacttccagactcatgaccagatcggtatg
atctgttccggaatcggtccaatgtcgtccatgaacattcctattcccatcaaccttgtg
atgcctcctatccctccacctggttatttaggacagctgaacggcccctctgcaggtcgt
ggtgaaagcatgaagaataaatcagccggcacaagcggcagtggaactcgaggtgctcgt
caaagaaacagtggagacgtgggaatagacggagttcagcctggaggtcacatgactggc
agccaggctagccaggaccagggctcccagccgttctcccaggggcccctcacacaaggc
tacatcagcatgagtcagccctcccagatgagccagcctgggctctcccagcctgaactg
tcacaggacagttacctaggagatgaattcaagtcccagtttgatgtggctctgtcccag
gactccacataccagggggaacgggcctaccaacatggagtgactggactgtcccagtac
tag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (17)   
   Pfam (17)   
All databases (39)   

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