KEGG   Candidatus Peribacter riflensis: PeribacterA2_0075
Entry
PeribacterA2_0075 CDS       T04147                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
prf  Candidatus Peribacter riflensis
Pathway
prf03030  DNA replication
prf03410  Base excision repair
prf03420  Nucleotide excision repair
prf03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:prf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PeribacterA2_0075
   03410 Base excision repair
    PeribacterA2_0075
   03420 Nucleotide excision repair
    PeribacterA2_0075
   03430 Mismatch repair
    PeribacterA2_0075
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:prf03032]
    PeribacterA2_0075
   03400 DNA repair and recombination proteins [BR:prf03400]
    PeribacterA2_0075
Enzymes [BR:prf01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     PeribacterA2_0075
DNA replication proteins [BR:prf03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     PeribacterA2_0075
DNA repair and recombination proteins [BR:prf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     PeribacterA2_0075
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     PeribacterA2_0075
   MMR (mismatch excision repair)
    DNA ligase
     PeribacterA2_0075
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      PeribacterA2_0075
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 BRCT_2 PTCB-BRCT RNA_ligase BLACT_WH
Other DBs
NCBI-ProteinID: ALM09471
UniProt: A0A0S1SU78
Position
complement(68987..71134)
AA seq 715 aa
MEKRAAAARIEKLRKEIWRLNRAYFIENKPAASEDVRDALKQELIALEKEHPDLVTPDSP
TQRVGAPLDGRLPKVKHLSPKESLSDMFSREEIEEWMDQMRRALGKEDMHFHCIVELKID
GLNISLVYEKVQGEPRYRFLRALTRGNGIEGEDVTHTVRTIEALPLGFPAKESEKLPKYL
EISGEVYMTKAALKHLNKDLPDAEKFANPRNAAAGSVRQLDPKVTASRDLRILCYALDPH
GADALGIETQKELMEFLMEAGFPVHRGFEMCSTVEAIQKVFDGWKKERESLPFDIDGIVI
KVTERRLQRDLGSTAKAPRWARAYKFPAEQKTARILDIQLQVGRTGAITPVAHLTPTLVA
GTTVARATLHNADEIARLDVRIGDTVVIQKAGDIIPEVVEVLTKLRPHGTKPFHYPKHCP
SCGSALERPEGEAVHRCPNPQCAAMRQERIEHFASRHALDIEGLGKETVEVLLAEGLITD
PADIFSLTMEDLMGLPLFKEKKATNLLTAIEQARRAPLDRFLFALGIRHIGRETAEILAR
RLAWPVQETYLEVAEEIGPQVSLFAGGKKNVRVHGIAMAGILATLKKLTAEELAAIDQIG
PVVADSLVEWMHDEDNEELLKKFAHAGVIAVQPEGSHAPQIFAGKTFVLTGTLPSLSREQ
AKTLIKERGGKVSSSVSAKTDYLLAGAEPGSKWDDARKMDVKTIDEKEFLSLLKR
NT seq 2148 nt   +upstreamnt  +downstreamnt
atggaaaagcgcgctgccgctgcacgcatcgagaaactgaggaaggaaatctggcgtctc
aatcgcgcctacttcatcgaaaacaagcctgcagccagcgaggatgtgcgcgacgccctc
aagcaggagctcatcgctctcgagaaggagcaccccgatctcgtcacccccgattcgccc
acccagcgcgtgggcgcccccctggacggtcggttgcccaaagtgaagcacctctcgccc
aaagaatcgctctcagacatgttctcacgcgaagagattgaagagtggatggaccagatg
cggcgcgcactgggaaaagaggacatgcactttcactgcatcgtggagctcaaaatcgac
gggctgaatatctcgctcgtctatgagaaggtgcaaggcgaaccccgctaccggttcctc
cgcgccctcacgcgcggcaacggaatcgagggggaggatgtgacgcacacggtgcgcacc
atcgaggctctgcccctcggtttcccggcaaaggaatcggagaagctgccgaagtacctg
gagatttccggcgaggtgtacatgacgaaagcggcgctgaaacacctgaacaaggatctg
cccgatgcagagaaattcgccaacccccgcaatgccgcggcgggcagcgtgcggcagctg
gatcccaaagtgacggcaagccgcgacctgaggattctctgctatgccctggatccgcac
ggcgcggacgcactcggcatcgagacgcagaaggagctcatggaatttctgatggaggcg
gggtttcccgtgcaccgcggatttgagatgtgctcgacggtcgaggcgattcagaaggtc
ttcgacggatggaagaaggagcgcgagagcctccccttcgatatcgatggcatcgtcatc
aaagtgactgagcggcgcctgcagcgcgatctgggctccaccgccaaggcgccccgctgg
gcccgggcctacaagttccccgccgagcagaagacggcgcgcattctggatattcagctg
caggtgggccgcaccggcgccattacgcccgtggcgcacctgacgccgactctggtggcg
ggcaccacggtcgcgcgcgccacgctgcacaacgccgatgagatcgcgcggctggatgtg
cgcatcggcgacaccgtcgtgattcagaaggcgggcgacatcatccccgaagttgtcgaa
gtcctgaccaaactgcgcccgcacggcacgaaaccttttcactacccgaagcactgtccc
agctgcggctctgctctggagcggccggagggcgaagcggtgcaccgctgtccgaacccg
cagtgcgcggccatgcgccaggagcgcatcgaacacttcgcctcgcgccacgcgctcgac
atcgaggggctgggcaaagaaaccgtcgaggtcctgctggcggaggggctcatcaccgat
ccggcggatatcttttcgctgacgatggaggacctcatgggcctgccgctcttcaaggaa
aagaaggccacgaatctgctcacggcaatcgagcaggccaggcgcgcgcctctggaccgt
tttctgttcgcgctgggcatccgccacatcgggcgtgagacggcggagattctggccagg
cgcctcgcctggccggtgcaggagacatatctcgaagtcgccgaagagatcgggccgcaa
gtatcgctcttcgccgggggcaagaagaacgtgcgcgtgcacggcatcgcgatggcgggc
atcctcgccacgctcaagaaactcaccgccgaagaactggccgccatcgatcagatcgga
cccgtggtggcagattccctcgtggagtggatgcacgatgaagacaatgaggagcttctc
aaaaaattcgcgcacgcgggcgtgatcgctgtccagccggagggcagtcacgcccctcag
atctttgccggcaagacgtttgtgctcaccggaacgctgccttccttaagtcgtgagcag
gcgaaaactcttataaaggagcgtggcggaaaagtgagttcctcagtgagcgccaaaacc
gactacctgctcgcgggggcggaaccgggcagcaaatgggatgatgcacggaagatggat
gtgaagacgatcgatgaaaaggagtttctctcactcttgaagcgctaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (36)   
   KEGG ORTHOLOGY (1)   
   RefGene (33)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (63)   

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