KEGG   Stutzerimonas stutzeri A1501: PST_3937
Entry
PST_3937          CDS       T00511                                 
Name
(GenBank) ATP-dependent RNA helicase, DEAD box family
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
psa  Stutzerimonas stutzeri A1501
Pathway
psa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:psa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PST_3937
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:psa03019]
    PST_3937
Enzymes [BR:psa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     PST_3937
Messenger RNA biogenesis [BR:psa03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     PST_3937
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 P-loop_SecA AAA_25
Other DBs
NCBI-ProteinID: ABP81560
UniProt: A4VRF9
Position
4267193..4269022
AA seq 609 aa
MSFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL
ELLFPGGHPDREHRYGPKQPRVLVLTPTRELAAQVHDSFKVYARDLPLKSAVIFGGVGMN
PQIQAVAKGIDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAK
LPAKRQNLLFSATFSKDITDLAAKLLQNPERIEVTPPNTTVERIEQRVFRVASSHKRALL
AHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKANQV
RILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKGIERMTKQRIPDGDLQGFDASSIEAEKPEVREPRQPRPQRGERKARGERDKPAEKGAE
QKERNRRSKSKTRKPARDGVASEAQGVARPPQLPPDRAPDEFLDDEVDNFGNRVDYVSPY
QNKQNRGRRTSGQAQPGSALRAAGAGAGAARNGGGGAAGSKGKRPAAGQGQAARNGQPRN
GQPRRKNEGRRIDEPVVTRQEMAKPREKQPVIIHKESKIDRLPSLEQLEQLPSRPRGEKP
ALLTRNREA
NT seq 1830 nt   +upstreamnt  +downstreamnt
atgtcctttgcttccctcggtctctccgaggctttggccggtgccgtcgaggccgccggt
tacacccagcctactcccgtgcaacagcgggccattcccgccgtgttgcaaggccgtgac
ctgatggtcgccgcccagaccggaaccggcaagacaggcggcttcgccctgccggtactc
gaattgctgtttccgggtggtcacccggatcgtgaacaccgctacggcccgaaacagccg
cgcgtgctggtgctgacaccgacccgcgagctcgccgcccaggttcacgacagcttcaag
gtctacgcccgcgatctgccgctgaaaagcgcggtgatcttcggcggcgtcggcatgaac
ccgcagatccaggccgtggccaagggtatcgacgtgctggtcgcctgccccggtcgcctg
ctcgacctggccaaccagaaggccatcgacctgtcgcacgtggaaatcctcgtcctcgac
gaagccgaccgcatgctcgacatgggcttcatccatgacgtcaagaaggtcctggccaag
ctgccggccaagcgccagaacctgctgttctcggccaccttctccaaggacatcaccgac
ctcgccgccaagctgctgcaaaacccggagcgcatcgaggtcaccccgccgaacaccacc
gtcgagcgcatcgagcagcgcgtgttccgcgtcgcctccagccacaagcgggccctgctc
gcccacctgatcacccagggtgcctgggagcaggtgctggtcttcacccgtaccaagcac
ggcgccaaccgcctggccgagtacctggagaagcatggcctgccggctgccgcgatccat
ggcaacaagagccagaatgcccgcaccaaggccctggccgacttcaaggccaaccaggtg
cgcatcctggtggccaccgatatcgccgcccgcggcctggacatcgaccagctgccgcat
gtggtcaacttcgagctgcccaacgtcgaggaagactatgtgcaccgcatcggccgcacc
ggccgcgccggacgcagtggtgaagccatttcgctggtagcgccggacgaggagaagctg
ctcaagggcatcgagcgcatgaccaagcagcgcattcccgatggcgatctgcagggcttc
gacgccagcagcatcgaggcggagaagccggaagtccgtgagccccgccaaccgcgcccg
cagcgtggcgagcgcaaggcacgtggcgagcgcgacaagccggcggaaaagggtgccgag
cagaaggagcgcaatcgccgcagcaagagcaagacgcgcaagccggcccgcgatggcgtg
gccagcgaagctcagggcgtcgcccggccgccgcaactgccaccggatcgtgctccggac
gagttcctcgatgacgaagtggacaacttcggcaatcgcgtcgattacgtcagcccctat
cagaacaagcagaaccgcggacgccgtaccagcggtcaggcccagccgggctccgcactg
cgtgcagctggagctggagctggagctgcccgcaacggcggtggcggcgcagcgggaagc
aagggcaagcgtcccgccgctggccagggccaggctgcgcgcaacggccagccacgcaat
ggtcagccgcggcgcaagaacgagggtcgccgcatcgatgagccggtcgtcacgcgtcag
gaaatggccaagccgcgcgagaagcagccggtgatcattcacaaggaatcgaagatcgat
cgtctgcccagcctggagcagctcgagcagttgccgtcccgcccgcgtggcgagaaaccg
gccctgctgacgcgcaatcgcgaagcctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

Download RDF
DBGET integrated database retrieval system