KEGG   Piscirickettsia salmonis: PSLF89_344
Entry
PSLF89_344        CDS       T03982                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
psal  Piscirickettsia salmonis
Pathway
psal03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:psal00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    PSLF89_344
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psal03021]
    PSLF89_344
   03400 DNA repair and recombination proteins [BR:psal03400]
    PSLF89_344
Enzymes [BR:psal01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     PSLF89_344
Transcription machinery [BR:psal03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     PSLF89_344
DNA repair and recombination proteins [BR:psal03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      PSLF89_344
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid TAFII28 ApbA_C
Other DBs
NCBI-ProteinID: AKP72511
Position
complement(2852905..2857113)
AA seq 1402 aa
MKDLLGMVKRSARFEDFDAIRIGLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVAPTKVRRDRMGHVDLASPVAHIWFLRSL
PSRIGTLLDMTLRDIERVLYFEAFVVIEPGMTALEKGQMLSDEEYLNALEQYGDEFDARM
GAEAIKIILKELNLEAEITTLRDELPTTNSETRIKKITKRLKLLEAFAASGNKPEWMVMD
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNRRALKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIFSKLQFRGLATTIKAAKKLVEKEAAEVWDVLDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHIPLTVEAQLEA
RALMMSTNNILSPASGDPVIAPSQDVVLGIYYTTRDRINAKGEGMVFADIQEAERAYQAG
VAELHARVKVRITDFVRDDNKELVKRTQLTETTVGRALLFTIVPDGIPFDMVNKAMGKKQ
IAGLLDECYHNVGLKETVVFADQLMYAGFRYATRSGVSVGIDDMVVPEAKTAIIDEAEAQ
VREITEQYASGLVTAGERYNKVVDIWSRTNDSVKKAMMENLSKDQVVDAEGNTVEQVSFN
SVYMMADSGARGSQDQMRQLAGMRGLMAKPDGSIIETPIIANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVTEVDCGTEEGLLMTPLIEGGDVVVPLADRLI
GRSCAKDVISPSGEVVLEKGTYLDEHAVRRIDEAGVYEVTVRSPVICETRRGICSTCYGR
DLARGHRVNLGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSSAANNIQVKNSGFIRFH
NIKKVDRVDGKLVTISRSGQIAVVDEHGREREQYKLPYGSDLMVADGAAVDAGQIVAKWD
PHSHPIISEVKGRIRFIDLLDGVSMSRQVDEMTGLSSIVVEDAKRSGSTGKELRPMVRLV
DERGDDLCIPNTNIAASYNLPTGAVLNLENDAEIGVGDVIARIPQEGSKTRDITGGLPRV
ADLFEARIPKEAAVLAEISGVVNFGKETKDKRRLVITPPEGEAFEILVPKWRPLNVFEGE
QIEKGEVLVDGEPSSHDILRLKGVRALADYIVNEIQDVYRLQGVKINDKHIEVILRQMLR
KVMVTMAGDTKLLVGELVEDYQALEENERLADDQVPAHFTPMLLGITKASLSTESFISAA
SFQETTRVLTEAAVTGKRDDLRGLKENVIVGRLIPAGTGLAYHKERRRNRQLGSVQEIVE
VKKPTADDVQSALSEAFKASDA
NT seq 4209 nt   +upstreamnt  +downstreamnt
ttgaaagatttattgggtatggtaaagcgtagtgcacgctttgaagattttgatgcaatt
cgtattggccttgcatcccctgacatgattcgttcatggtcttatggtgaagtgaaaaaa
ccagagactattaactatcggacatttaagccagaacgtgatggcttattctgtgcaaaa
atctttggaccgatcaaagattatgagtgcttgtgtggtaagtataagcgcttaaagcat
cgtggagtgatctgtgagaagtgtggtgttgaagttgcaccaactaaagtgcgtcgtgac
cgcatggggcacgttgatctggccagtccagtggcgcatatttggttcttacgttcatta
ccatcacggattggcacgttgcttgatatgaccttgcgtgatatcgagcgtgtgctttat
tttgaagcgtttgtggtgatcgaaccaggcatgacggcgctagaaaaaggccaaatgctg
tctgatgaagaatatttaaatgctttagagcagtacggtgatgaatttgatgcacgcatg
ggtgcagaggccattaagattattctaaaagaattaaatcttgaggctgaaattactacg
ctacgtgatgagctgccaacgaccaactcagaaacacggattaagaaaatcaccaagcgg
ttaaaattattagaggcttttgctgcttctggtaataaaccggagtggatggtgatggat
gtgttgccggtgttaccgcctgatttgcgcccattggtgcccttggatggcggacgtttt
gcaacctctgacctgaatgatttatatcgtcgggtgattaaccgtaataatcgcttaaag
cgtttattagaacttgctgcaccggatatcattgttcgcaatgaaaagcgtatgttgcaa
gagtctgtggatgcccttttagataacggacgtcgtggtcgtgcgattacaggttctaat
cgtcgtgcgcttaaatcacttgcggatatgattaaaggtaaacaagggcgttttcgtcaa
aacctcttgggtaagcgtgttgattactctggccgttcggtgattgtggttggcccgact
ttgcgcttgcatcaatgtggtttgccgaaaaagatggcgttagagctgtttaagccattt
atcttcagtaagttacagttccgtggccttgcgacgacgattaaagcggcgaaaaagcta
gttgaaaaagaagctgctgaggtctgggatgttcttgatgaagtgattcgtgagcatccg
gtgttgcttaaccgtgcgccaaccttgcaccgcttaggtattcaagcgtttgaaccggtg
ttgattgaaggcaaggcaattcagttgcatccattggtctgtgcagcgtataacgctgac
tttgatggtgaccaaatggcggtgcatattccgttgacggtcgaagcgcagttagaagca
cgtgccttgatgatgtcgacgaataatatcctctcaccagcatccggtgatccggtgatt
gcaccttctcaagacgttgtcttaggtatttattatacaacgcgtgatcggatcaatgct
aaaggtgaaggtatggtctttgctgatattcaagaagcagagcgtgcttatcaggctggc
gttgcagaattgcatgcgcgtgtgaaggtccgtattactgattttgtccgtgatgacaat
aaagaattggttaaacgtacccagctgacagagactacagtgggtcgtgctttattgttt
acgatagtgcctgatggcattccgtttgatatggttaataaagcgatgggtaaaaaacaa
atcgctggcctattggatgagtgttatcacaatgtgggtttaaaagagacggttgttttt
gctgatcagctgatgtatgccggttttcgctatgcaacacgctcgggtgtttcggttggc
attgatgatatggtggtgcctgaagcgaagacggcgattattgatgaagctgaagcgcaa
gtgcgcgagattactgagcagtacgcgtcgggcttggtcactgctggtgagcgttacaat
aaagtggtcgatatttggtcacgtacgaatgacagtgttaagaaagcaatgatggaaaac
ctgtctaaagatcaagtggttgatgctgaaggtaatacagtagagcaagtctcatttaat
tctgtttacatgatggcagactcgggtgcacgtggttcgcaagatcagatgcgtcagttg
gccggtatgcggggtttgatggcaaaaccggatggttcgattattgaaacgccgattatt
gctaatttccgtgaaggtctaaacgtactgcaatactttatttccactcacggtgcgcgt
aaaggtttggccgataccgcattaaaaacagcgaactctgggtatcttacccgtcgtttg
gtggacgtagcacaagatgttgttgtcactgaagtcgattgtggtaccgaagaaggctta
cttatgaccccgctgattgaagggggtgatgttgttgtaccattggcggatcgcttaatt
ggtcgctcttgcgctaaagatgtgatctcaccgtcgggtgaggtggtgcttgagaaaggt
acttacctggatgagcacgcggttagacgtattgatgaagcgggtgtttatgaagttact
gtgcgctcgccagtaatctgcgagacgcgccgtggcatctgctcaacctgttatggtcgt
gatttagcgcgtggtcatcgcgtgaacttaggtgaggctgtgggtgtaattgcggcacaa
tcaattggtgaaccaggaacgcagctgacgatgcggaccttccatatcggtggtgctgca
tcacgttcttcggcggcgaataacattcaggttaaaaatagcggttttatccgttttcac
aatattaagaaagtcgatcgtgtcgatggtaagttggtgacgatctcacgttctgggcag
attgctgtggttgatgagcatggccgtgagcgtgagcagtataaattgccttatggttct
gacttaatggtggcagatggcgcagcagtcgatgcgggccaaattgttgccaagtgggat
cctcactcgcacccaattatctccgaggtgaaagggcgtattcgctttattgatttgctc
gatggcgtatcgatgtctcgtcaggttgatgagatgaccgggctttcaagcattgtagtt
gaagatgcaaagcgttcagggtcgacaggtaaagagcttagaccgatggtgcgcttggtt
gatgagcgtggtgatgatttatgtattccaaatacgaatattgctgccagttataacctg
ccgacaggtgcggtcttaaatcttgaaaatgatgctgaaataggtgtgggtgatgttatt
gcccgtattccgcaagaaggctcgaaaacacgtgatattacggggggtctgccgcgagtg
gctgacttgttcgaggcgcggattcctaaagaagcggctgtattggctgaaatttcaggg
gttgttaactttggtaaagagactaaagacaaacgccgtttggtgatcacaccacctgaa
ggtgaagcgtttgaaattttagtgccaaaatggcggccgctgaatgtctttgaaggtgag
cagattgaaaaaggtgaggttctcgttgatggtgagcctagctcacacgatattttacgt
ttaaaaggtgtgcgagcgcttgcagattatatcgtgaatgagattcaagatgtttatcga
cttcagggtgtaaaaattaatgataagcacattgaggtgatcttacgccaaatgttacgc
aaggtcatggtgaccatggcgggcgatactaaattgctcgttggtgagttggttgaggac
tatcaggcgcttgaagaaaatgagcgcttagcagatgaccaagtaccggcgcatttcacg
ccgatgttactgggtattactaaagcctcgctttcgaccgaatcctttatctcagcagca
tctttccaagagacgacgcgtgtcttgactgaagcggctgtaacaggaaaacgtgatgac
ctacgtggtctgaaagaaaatgtgatcgttggtcggctgattcctgcgggaaccggcttg
gcgtatcacaaagagcgacgtcgtaatcgtcaattgggatcagtgcaagagattgttgaa
gtgaagaagccaacggccgatgatgtacaaagtgcgttaagtgaagcctttaaagcctcc
gatgcttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (31)   

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