KEGG   Pseudomonas syringae pv. syringae B728a: Psyr_0458
Entry
Psyr_0458         CDS       T00246                                 
Name
(GenBank) Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
psb  Pseudomonas syringae pv. syringae B728a
Pathway
psb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:psb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Psyr_0458
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:psb03019]
    Psyr_0458
Enzymes [BR:psb01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Psyr_0458
Messenger RNA biogenesis [BR:psb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Psyr_0458
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 P-loop_SecA
Other DBs
NCBI-ProteinID: AAY35528
UniProt: Q4ZZ94
Position
complement(494944..496833)
AA seq 629 aa
MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLL
AHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDV
RIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPARGDGDKNNGGRRD
KGKDKGKEKPAAASATGERPARQPREKKPREGTPRSEQRASQPATPRPAADRAPDEFRDD
EVDNFGNRADYVSPYQGKGQNRGRRPAAAPGAAAPAAGGAARPANPGRPAGGARNGSGSG
APKRNGSGSSAPRSRDGQPRGRRPAREDQPLPREGQEPAARAPRDGQPQPKIVHKESKID
RFPSAEQLDQLPSRPRGEKPALLTRNRDS
NT seq 1890 nt   +upstreamnt  +downstreamnt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggcagccggc
tatacccagcctacccccgtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggttgcggcacagaccggtactggtaaaaccggcggtttcgccctccctattctg
gagcggctgtttcccaatggtgttccggacaaatcccagcgtcacggcccgcgtcaaccg
cgcgttctggtcctgaccccgacccgcgaactggccgcacaggtgcacgagagcttcaag
ctctatgcccgcgacctgaagttcgtcagcgcctgcatcttcggcggcgtcggcatgaac
ccgcaggttcaggccatgtcccgtggtgtggacgtcctggtggcctgccctggccgcctg
ctcgacctggccggtcaaggcagtgtcgacctctcccacgtcgaaatcctggtgctcgat
gaagcagaccggatgctcgacatgggcttcgtgcatgacgtcaagaaggtcctcgcgcgg
ctgccggccaagcgccagaacctgctgttctcggctaccttctccaatgacatcacgtcg
ttggccggcaagctgctgcacaacccagagcgcatcgaagtcacgccgccgaacaccacg
gtcgagcgcatcgagcaacgggttttccgcctggcagccaaccacaagcgttcgctgctg
gcgcacctgattaccgtcggcgcctgggaacaggtgctggtcttcacccgcaccaagcac
ggtgccaaccgtctggccgagtacctggacaagcacggccttgcggctgtcgcgatccac
ggcaacaagagccagaacgcccggaccaaggccctggccgacttcaaggcaggcgatgta
cgcatcatggtcgcgaccgatatcgccgcacgcggcctggatatcgatcagttgccgcat
gtcgtcaacttcgagctgcccaacgtcgacgaagactacgtgcaccgtatcggtcgtacc
ggccgtgccggtcgctctggtgaagccatttcgctggttgcgccggacgaagagaagctg
ctcaaaagcatcgagcgcatgaccaagcagaagatcgccgacggcgacctgatgggcttc
gacatcactgcagtcgaggctgagaagcctgaagtgcgtgagcgtccggatgttcgcaac
tcgcgtggcgcacgtcctgcacgtggcgatggcgacaagaacaacggtggtcgtcgcgac
aagggcaaggataaaggcaaggaaaaacctgctgctgcctccgccactggcgaacgccct
gcaaggcagccacgcgaaaaaaaacctcgtgagggcacgcctcgcagcgaacagcgtgca
tcgcaacccgccacaccgcgcccggcagccgatcgtgcccctgacgagttccgtgacgat
gaagtagacaactttggcaaccgcgcggactacgtcagtccttatcagggcaaaggccag
aaccgtggtcgtcgccctgctgccgcgcctggcgcagccgcaccggccgctggcggcgct
gctcgcccggccaatccgggtcgccctgccggtggcgctcgcaacggctcgggcagtggc
gcgccaaagcgcaacggctcgggttcatcggcaccacgctcgcgtgatggtcagccacgt
ggccgtcgtccggcacgtgaagaccagcccttgccacgtgaaggtcaggagccagccgca
cgcgcaccacgcgacggccagcctcagccgaagatcgtgcacaaggaatccaagatcgac
cgtttcccgtctgccgagcaactggaccagttgccaagccgcccacgcggtgaaaaaccg
gccctgctgacccgcaaccgcgacagctga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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