KEGG   Pseudonocardia sp. EC080610-09: AD006_00660
Entry
AD006_00660       CDS       T04146                                 
Name
(GenBank) ATP-dependent DNA helicase
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
pseq  Pseudonocardia sp. EC080610-09
Pathway
pseq03420  Nucleotide excision repair
pseq03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pseq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    AD006_00660
   03430 Mismatch repair
    AD006_00660
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pseq03400]
    AD006_00660
Enzymes [BR:pseq01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     AD006_00660
DNA repair and recombination proteins [BR:pseq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AD006_00660
   MMR (mismatch excision repair)
    Other MMR factors
     AD006_00660
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 HRDC UvrD_C_2 AAA_30 C1_1
Other DBs
NCBI-ProteinID: ALL78235
Position
complement(138443..140485)
AA seq 680 aa
MDPEQREAVTAPRGPVCVLAGAGTGKTRTITRRIAHLVGQGHVVAGQVLAVTFTARAAGE
LRTRLRQLDAGGVQARTFHAAALRQLRYFWPQVIGGSPWPLLDGKFRLVGQAAARARVGT
DSDALRDLSSEIEWAKSSLVAPVDYAAEAARRKRDTPGPADQVAQVYAAYEELKNAAEVL
DFDDLLLHTAVALEEHAGVAEEFRSRYRCFVVDEYQDVTPLQQRLLDAWLGERDDLTVVG
DANQTIYTFAGASPRYLLEFPRRFPGAAVVRLQRDYRSTPQIVGCANQLIGAARHRPAGS
RLQLVGQLPPGPDPDFSEHDDEPAEAAAVAGRILTLLNDGTEPSEIAVLFRINAQSEAYE
QALSDAGVPYQVRGGERFFARPEVRRAMIALRGAAPDQRPGTDLVDVTRAVLGARAGLTD
EPPKGATLRAQWESLLALVGVAEELAAIEPQADLTRLCAELDTRADSAQAPVVQGVTLAS
LHAAKGLEWDAVFLVGLADGTLPIGHAGDDEHAVEEERRLFYVGVTRARRVLSMSWSLSR
ASGRGPKRRRSRFLYGLIPDSHPASRVAGERRPGAARPKCRVCGSPLFGSAATKLLRCDD
CPSDVDLELLDRLKQWRAGEAKQQDVPAFVVLTDATLTAIAEQRPSGPSALVGIPGIGAA
KLDRYGDDVLRLLADHDEER
NT seq 2043 nt   +upstreamnt  +downstreamnt
ctggatcccgagcagcgcgaggccgtcaccgcgccacggggcccggtctgcgtgctggca
ggtgccggcaccggcaagacccgcacgatcacccgccggatcgcgcacctggtggggcag
ggccacgtcgtcgccgggcaggtcctcgccgtcaccttcaccgcgcgcgcggccggcgag
ctccggacccggctccggcagctcgacgccggtggggtgcaggcacggaccttccacgcg
gcggccctgcgccagctccgctacttctggccgcaggtgatcggcgggtcgccctggccg
ctgctcgacggcaagttccggctggtcggccaggccgccgcccgggccagggtcggcacc
gactccgacgcactgcgcgacctgagctccgagatcgagtgggcgaagtcgtcgctggtc
gccccggtcgactacgcggccgaggccgctcgccgcaagcgggacacccccggccccgcc
gaccaggtcgcccaggtctacgccgcctacgaggagctcaagaacgccgccgaggtgctc
gacttcgacgacctgctgctgcacacggccgtcgcgctcgaggagcacgccggggtcgcc
gaggagttccgctcgcggtaccgctgcttcgtcgtcgacgagtaccaggacgtcacgccg
ctgcagcagcggctgctcgacgcctggctcggcgagcgggacgacctcacggtcgtcggc
gacgcgaaccagacgatctacaccttcgccggcgcctcgccgcgctacctgctggagttc
ccgcgccggttccccggcgcggccgtcgtccggctgcagcgcgactaccggtccaccccg
cagatcgtcggttgcgccaaccagctgatcggggccgcgcggcaccggcccgccgggtcg
cggctgcagctcgtcgggcagctcccgcccgggcccgatccggacttctccgagcacgac
gacgagccggccgaggccgccgccgtcgccggccggatcctgacgctcctcaacgacggg
acggagccgtccgagatcgcggtgctgttccggatcaacgcccagtccgaggcgtacgag
caggcgctctccgacgcgggcgtgccgtaccaggtgcgcggcggtgaacggttcttcgcc
cgcccggaggtccgccgggcgatgatcgcgctgcgcggcgccgcgcccgaccagcggccg
ggtaccgatctcgtcgacgtgacgcgcgccgtgctcggcgcccgcgccgggctcaccgac
gagccgccgaagggcgccaccctgcgtgcccagtgggagtcgctgctcgcactggtcggg
gtggccgaggagctcgccgcgatcgagccgcaggccgacctgacccggctgtgtgccgag
ctcgacacccgggccgactcggcgcaggccccggtggtgcagggggtgacgctcgcgtcg
ctgcacgcggcgaagggcctggagtgggacgcggtgttcctcgtcggcctcgccgatggg
acgctcccgatcggccacgccggcgacgacgagcacgccgtcgaggaggagcggcggctg
ttctacgtcggggtcacgcgcgcccgccgggtgctgtcgatgtcctggtcgctgtcgcgg
gcgtcggggcgcggcccgaaacggcgccggtcccggttcctctacggactgatcccggac
tcgcaccccgcgtcccgggtcgccggcgagcgccggcccggcgccgcccgcccgaagtgc
cgggtctgcgggtccccgctgttcgggagcgccgcgaccaagctcctgcgctgtgacgac
tgcccgtccgacgtggacctggagctgctggaccggctcaagcagtggcgcgcgggcgag
gcgaagcagcaggacgtgccggccttcgtcgtcctcaccgacgcgacgctcaccgcgatc
gccgagcagcggccgtccggaccgtcggcgctggtcgggatccccggcatcggtgcggcc
aagctcgaccggtacggcgacgacgtcctgcggctgctcgccgaccacgacgaggagcgc
tga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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