KEGG   Phytophthora sojae: PHYSODRAFT_553621
Entry
PHYSODRAFT_553621 CDS       T03459                                 
Name
(RefSeq) hypothetical protein
  KO
K12591  exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
psoj  Phytophthora sojae
Pathway
psoj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:psoj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PHYSODRAFT_553621
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:psoj03019]
    PHYSODRAFT_553621
Messenger RNA biogenesis [BR:psoj03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     PHYSODRAFT_553621
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC WHIM1 WSD
Other DBs
NCBI-GeneID: 20662921
NCBI-ProteinID: XP_009517982
JGI: Physo3_553621
UniProt: G4YR27
Position
Unknown
AA seq 1507 aa
MAEELDAAAFVGALYRKVLLSVKASNAVPSEDDGFHFHSQFSAEFAARSKSSGAKAEALV
RLLTKRRCGDADGDDAGDSSDEDEDEQQELFDGPEPNARVTDYADMLLDEATKHLARFVR
GETEPSADASTLRPLENKPHVFETNKKARKNEKEGQAEKKMARGAQDKPQDRFDEKIDNS
DAPFVSKLREKVHALNDGAAVVADDEDDEMAPRHPYFPEIKALKYAPWQLEASDEPYEMV
ELEKASYLWVDSEEKLVQMMKSLTAVEARVIAVDLEHHSYRSYMGLTCLMQISTAREDFL
VDTLALRGKLQTLNQVFCDPAKVKVLHGSDMDILWLQRDLGLYIVNLFDTGRAARLLQYP
RFSLAYMLKRHCNIDADKQYQLADWRTRPLDKNMVKYAREDTRYLLFIYDRLKKELLQAG
AKSRESFLFQTLQNSSKLCLQVYEKPQPTEEDALALGEKLKGTVNTQELSELQKRVIVAL
YLWRDRVARQEDESVAYVMANHVLMKLTKHLPVRSDELFRACHPVPLLIRKHALQITKMI
VAEKAKLSEEESKAAQAPEPVAVKPTRKTWNEDGEEKIVTSSSLKRVGRAAYAPWKSGQR
KAGIAGDASTGSSSSSTAQPMALGIDVAETIIKEPETAAELLEKVNALVASTTFTIAESE
PVETPVTQPASLSETPAKDDSSEQESKPKIPQSISEAYHMSNRSKRRKMDTSSASQVKDR
AQAFMQKVDGDDSKVDEEDKSGFQSFDYAAASSQVAGAKFELKKNEDEDRRGGRGGRGGR
GGNNKKQAGYNPFVGMSGKGKKGKSSDEPQAGRKPVKKMHHMPRSATKNIHNPYHKRYII
PLHFSAILEKRTKQPTRSPMARSAALKRVSPASLKSEEGEGAAKKLKASVDVASEAAATV
RSGPLEAEDSESDPIDEGDDAQTSTSATSNGIKHDEEDGEEDVEMADAEASAGQETAKIK
ADSKKNGAAKSASKKPVKKRAKPAAKSAANGKTKAAAKPKAKAKPAAKPKAKAAPKRKTR
TQEDKVKENAPLAAPFFVETGAEWNNTNIDFDELSVLRSRWELPAACHILWLLQSPLTLR
FSNTLLEYEAALLKPEDSPVLEDVFTKLLLKKSERECLSAGIGLKYEWWNKQLRIYYLDM
YDKWYALLRKAGERLPETFSQDEDDDDDSSADDKTDEQVDVELTDDEWLTLDILKARLET
LGMVCPLKHQSFADLSIELRCKILLNLCEAVVDDPANTEYMRQMEDDDLRVEPLGNDRAG
NMYYFFPQFYEERRLYRLDPETQQWALWAKGDDAFRSMLKAMKEVRGRKIRGEQELLDHL
EVIVEQIEDEDEARARQLEKANRLAILEAIPRKRSLRLQVKQLEKMERHQEELEHQKELS
MEEIAEMKRAELLRKVEKEAEKEARDAEREARRLHREQVEREEAQAERERRRLRRIEKEK
EDERLEQLAQEERRKQEEARELRARQRHGVEEWQQVEQDDQGAVEDATPTSTAAEAPEQV
PAPAKTP
NT seq 4524 nt   +upstreamnt  +downstreamnt
atggcggaggagcttgacgccgcggcctttgtgggcgccctgtaccgcaaggtgctgctc
tctgtgaaggcgtccaacgcggttccgtccgaggacgatggcttccacttccacagccag
ttcagcgccgagttcgcggcgcgctccaagagctccggcgccaaggccgaggcgctcgtg
cgactgctgaccaagcgccggtgcggtgacgcggacggagacgacgccggcgacagcagc
gacgaggacgaggacgagcagcaggagctcttcgacggcccggagcccaacgcgcgcgtc
acggactacgccgacatgctgctggacgaggccaccaagcacctggcgcgcttcgtgcgc
ggcgagacggagccttccgccgacgcgtcgacgctgcgaccgctggagaacaagccgcac
gtgttcgagacgaacaagaaggccaggaagaacgagaaggaggggcaggccgaaaagaag
atggctcgaggagcgcaggacaagccccaagacagattcgacgagaagatcgacaactcg
gacgcgcccttcgtgtccaagctgcgcgagaaggtgcacgcgctcaatgacggtgctgca
gttgttgcagacgacgaggatgatgagatggctccgcgtcacccgtacttcccggagatc
aaggcgctcaagtacgcgccctggcagttggaagcgtccgacgaaccgtacgagatggtg
gagctggagaaggcatcgtacctgtgggtggactcggaagagaaactggtgcagatgatg
aagtcgctgactgccgttgaggcccgcgtgattgcggtggatctggagcaccatagctac
aggtcgtacatgggacttacgtgtctgatgcagatctccactgcgcgcgaggacttcctg
gtggatacgctggcacttcgtggcaagctgcaaacgctgaatcaggtcttctgcgacccg
gcgaaggtgaaggtgctgcacggtagtgacatggatatcttgtggctgcagcgcgatctt
gggctgtacattgtcaacctgttcgacaccggtcgcgcggcgcgtttgctgcagtatccg
cgcttctccctggcgtacatgctcaagcgccattgcaacatcgacgctgacaagcagtac
cagctggctgactggcgcactcgcccgctcgacaagaacatggtcaagtacgcgcgtgag
gatacgcgctaccttttgttcatctacgaccgtctgaagaaggaactgcttcaggctgga
gcgaagtctcgtgaaagttttctgtttcagacgcttcagaactccagcaagctctgtttg
caggtgtacgagaagccccagccgacggaggaggacgcgttggcactgggcgagaagctc
aagggcactgtgaacacccaagaactctcggagctccagaagcgtgtgatcgtagctctg
tacctgtggcgcgaccgcgtcgctcgtcaagaggacgagtcagtggcctacgtgatggcc
aaccacgtgctcatgaagcttaccaagcaccttccagtgcgctccgacgagctgttccgc
gcgtgtcaccctgtgccgctgcttatccgcaagcatgcacttcagatcaccaagatgatt
gtcgccgaaaaggcaaaactgtcagaagaagagtcgaaggcagcgcaggctcctgaaccc
gtcgctgtcaaaccaacaaggaagacgtggaatgaggatggagaggagaagatagtgact
tcatcgagtctgaagcgcgtaggccgtgctgcgtacgctccttggaagagtggtcagcgc
aaggctggcattgctggcgatgcttcaactggatcgtcgtcgtccagcactgctcagcct
atggctctcggaattgacgttgccgagactattatcaaggagccggagacagcagccgag
ctgctcgagaaagtcaacgccttggtggcgagcacaacgttcacaattgcagagagcgag
cctgtcgagacaccagtaacgcagccggcgtccttgtccgagacgcccgccaaggatgac
agcagcgagcaggagtccaagcccaagatccctcagtccatctcggaggcctatcacatg
tcgaaccggtccaagcggcggaagatggacacgtcgtcggcttcgcaggtcaaggaccgg
gcgcaggcgttcatgcagaaggtcgacggagacgacagcaaggtcgacgaagaagacaag
agtggcttccagagcttcgattacgctgctgccagctctcaggtcgctggagccaagttc
gagttgaagaagaacgaggacgaggaccgacgtggcggtcgcggcggtcgtggcggtcgt
ggcggcaacaacaagaagcaggccggctacaacccgttcgtgggcatgagtggcaagggc
aagaagggcaagagctcggacgagccgcaagctggccggaagcctgtcaaaaagatgcac
cacatgccgagaagcgccacgaaaaatatacacaatccttaccacaagcgttatattata
cctctacattttagcgccattttggaaaaacggaccaagcagccgacgcgatctccgatg
gctcgtagcgccgcgctcaagcgcgtctcgcccgcgtcgctcaagtcggaggaaggggaa
ggcgccgccaagaagctcaaggcctcggtggacgtggccagcgaggcggcggccacggtg
cgcagcgggccgctcgaggcggaggacagcgagtcggaccccatcgacgaaggggacgac
gctcagacgtccacttcagcaaccagtaacggcatcaagcatgacgaagaggacggagaa
gaagacgtcgaaatggctgatgcggaggcctcggcgggccaggagacagcaaaaattaag
gcagacagcaaaaagaacggggcagccaagtctgcgtctaagaagccagtcaagaagcgc
gcaaagcctgctgcgaagtctgctgccaatgggaagacgaaagctgccgccaagcccaag
gcaaaggctaagcctgctgcgaagccgaaggctaaggctgcaccgaagcggaagacccgg
acgcaggaggataaggtgaaggagaacgcgccgcttgctgcgccattcttcgtggagacg
ggggccgagtggaacaacacgaacatcgactttgacgagctaagtgtgctgaggtcgagg
tgggagctgcctgcagcttgccatattttgtggctgctgcagagtccgctgacactgcgc
ttctccaacacgctgcttgagtacgaggcagcgctgctgaagccggaggatagtcccgtg
ctggaagatgtgttcacgaagctgctgctgaagaagagtgagcgcgagtgcttgagcgct
ggcattggactcaagtacgagtggtggaacaaacagctgcgcatttactacctggacatg
tacgacaagtggtacgcactgctgcgcaaggcaggagaacggctacctgaaacattttcg
caagatgaggacgatgacgatgacagcagcgcggacgacaagaccgacgagcaggtggat
gtggagctgactgacgacgagtggctgacgcttgatatcctgaaggcgcgccttgaaacg
cttggcatggtttgcccgcttaagcaccagtcattcgcggacttgtcgatcgagttgcga
tgcaaaattctgttgaacttgtgcgaggccgtggtagatgatccggccaacactgaatat
atgcgccaaatggaagacgatgacctgcgcgtggagccgcttggcaacgaccgcgccggc
aacatgtattactttttcccgcagttctacgaggagcggcggctgtacagattggacccg
gagacccagcagtgggcgctctgggcaaagggggatgacgccttccgctctatgctgaag
gctatgaaggaagtccgtggtcgtaagattcgcggtgaacaggagcttctggatcatctg
gaggtcattgtagagcagattgaggatgaagacgaagcgcgcgcccggcagctggagaag
gccaaccgcctagcgattctcgaggcgatccctcgcaagcgttcgctgcgtctgcaggtg
aagcagctggagaagatggagaggcaccaggaggagctggagcatcagaaggagctgtcc
atggaggagatcgcagaaatgaagcgcgccgagttgctgcgcaaggtggagaaggaggct
gaaaaggaggctcgtgacgccgagcgggaggctcgccgcttacaccgcgagcaggtggag
cgggaagaggcccaggctgagcgcgagcgacgccgtcttcgccgtattgagaaggaaaag
gaggatgaaaggctggagcagttagcccaggaagagcgcaggaagcaggaagaggcgcgc
gagctccgcgcccgtcaacggcacggggtagaggagtggcagcaagtagagcaggatgac
cagggcgcggtggaagatgcaacaccgacaagcaccgcagcagaggctcctgagcaggtt
ccagcgcccgcaaaaacgccatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (16)   

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