KEGG   Punctularia strigosozonata: PUNSTDRAFT_146015
Entry
PUNSTDRAFT_146015 CDS       T03131                                 
Name
(RefSeq) RNB-domain-containing protein
  KO
K12585  exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
psq  Punctularia strigosozonata
Pathway
psq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:psq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PUNSTDRAFT_146015
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:psq03019]
    PUNSTDRAFT_146015
Messenger RNA biogenesis [BR:psq03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     PUNSTDRAFT_146015
SSDB
Motif
Pfam: RNB Rrp44_CSD1 Rrp44_S1 OB_Dis3 PIN_4 CSD2 OB_RNB
Other DBs
NCBI-GeneID: 18881561
NCBI-ProteinID: XP_007387494
JGI: 146015
UniProt: R7S5U8
Position
Unknown
AA seq 982 aa
MDAVITQRKFFKKTARGKVIKVIRERYLRDDVGCGIEDCRECEHAPSGSASNFLPISGDR
QHASFPHGHFVLPDTNIFLAQMDLLESTLFSPPVILLQTVLEEVRHRSLPLYNRLKALIK
ADDKRIWVFYNEYRSETAIIREEGETPNDRNDRGIRKATEWYNAHLSAIRKVSRSAKSTL
PTVVLLTDDVANRQKAEKEGISCVSLRRYVEGMKESAQLMDLLSVGGEYIEPTRAATRAA
LYPDYLPHATLLAGVKGGELHQGHFNASPFNYLEGTVPVPAFTKPVLLLGRENMNRAVQG
DVVVVEVFDESEWKAPTNEVIDQESTLKNDDADDSDEEAEELDSVVEEQKVLKAEASRAA
SEKQPTGRVVGVIKRNWRAYVCHIDSTSLSSLNATSLSQQTVFATPVSRLLPRIRMRTRQ
APTLIGQKILVTIDRWEPTSRYPEGHFVRALGRVESKEAEQESLLLEYEVPYRPFGKAIL
DCLPVEGDKWVVPTKSDTSPEWRDREDLRDMIICSIDPPGCQDIDDALHARLLPNGNIEA
GVHIADVSHFVHADTPMDNEAAARGTTVYLVDKRIDMLPSLLGTNLCSLRPYVERLAFSC
IWELTPNAQIVKVRFTKSVIASKAAFTYKEAQMRKDDPNLNDELTKSIRLLNSLALKLKA
GRMAAGALNLASPEVKIHMDSAESSDPIDVEQKEMLETNSLVEEFMLLANISVAQKIQET
FPQTAVLRRHLPPPRTNFEKLQDILQKRKGLTLDVSSSGALAKSLDQCLDPKEPAFNTLV
RIMATRCMLSAEYFNSGSVARDTFGHYGLASPIYTHFTSPIRRYADVLVHRQLSAAISYW
PLHPSLHSKSHVERVLDVVNRRHRMAQMAGRASVEFYVGLALKSRAERQGDVKEEAFVIR
TFKNGVGVFVHKLGLEGLVMFKRDVKFDADNYTVSVPSTNGTEVPISVFDKVVVHMEVEK
DRNTQRGKVKMSLVEPVDSRAL
NT seq 2949 nt   +upstreamnt  +downstreamnt
atggacgctgtgatcactcagcgcaagtttttcaagaaaaccgcgcgggggaaggtcatc
aaagttattcgagagagatatctccgtgacgatgttggctgcggtatcgaggattgcaga
gaatgtgaacatgcaccatcgggatcagcatctaacttcctcccaatttctggagatcgc
cagcatgccagcttccctcatggtcacttcgtcttgccggatactaatatctttctggcc
cagatggatctactcgaatcaaccctattctcaccgcccgttatccttcttcaaactgtt
ctggaagaagtgcggcacagatcgttacccctttacaaccggctgaaggctttgatcaaa
gccgacgacaagcgaatatgggtcttctacaacgagtacagatctgaaacagcgatcatt
cgggaagaaggtgaaacgcctaatgaccgtaatgacagagggattcgaaaagcaacagag
tggtacaacgctcacttgtcggccatacgcaaggtctctcgaagcgcgaagagcacactg
ccgactgtcgtactcttgaccgatgacgtcgcgaatcgtcagaaagctgagaaagaaggc
atcagctgcgtttcattgcgtcgttatgtggaaggtatgaaggagtcagctcaactgatg
gatctgctttccgtcgggggcgaatatatcgaacccacgcgagccgccactcgtgccgcg
ctttatccagattatctgccacacgccacacttcttgcaggcgtcaaggggggagaactt
catcagggacacttcaatgccagtccgttcaactacctcgaaggaacagtgcccgtccct
gctttcaccaagccagtgcttttactcggtagagagaacatgaaccgtgcagtgcaaggc
gatgttgtggtcgtcgaagtctttgatgagagcgaatggaaggctcctacgaacgaagta
attgatcaggaatcgaccctgaaaaacgatgacgcagacgactctgacgaggaggctgaa
gaattggactccgtggtagaggaacaaaaagtccttaaagcagaggcttcccgcgctgcc
tccgagaagcagccgacaggacgcgttgttggcgtcatcaagcgtaactggcgcgcctat
gtctgccacatcgacagtacctccctcagctcgttaaacgcaacttccttgtctcagcag
acagtatttgccactccggtctcacgccttcttccgcgcatccgtatgcgcacccgtcag
gcgccgacgcttattggccagaagatcctcgttaccatcgatcgatgggagccgacatcc
cggtatcccgagggccatttcgtgcgtgccttgggccgcgtagaaagcaaggaagcggag
caggagagcctacttctcgagtacgaagtgccgtataggccgttcggtaaagcgatactg
gattgcttgcccgtggaaggcgataagtgggtcgttccgaccaagtcggataccagtccg
gagtggagggacagagaggacctgagggacatgattatatgcagtatcgatccccctggc
tgtcaagatatcgatgacgctctccatgctagactgctgccgaatggcaacatcgaggct
ggcgttcatattgccgatgtgtcgcacttcgtccatgcggacacccctatggacaacgaa
gcggctgcacgaggcaccaccgtttacctcgtcgataaacgaatcgacatgttaccgtcg
ttgctcgggacgaacctatgctcactgcggccttacgttgagcgccttgccttctcatgc
atttgggaactcacgccgaacgcgcaaatcgtgaaagtacgcttcacgaagtcagtcatc
gcctctaaggccgctttcacgtacaaggaggcgcaaatgcgaaaagatgatccgaatctc
aacgacgagctcacgaagagtatacggcttctcaactcgctggctttgaagctgaaggct
ggtaggatggctgcgggcgcactcaatctcgcctcccccgaagtcaagattcatatggac
agcgcggaatcgtccgatcccatcgatgtcgaacaaaaggaaatgctcgaaaccaacagc
ctcgtcgaagaattcatgttactcgcgaacatcagcgtggcacagaaaatccaagaaacg
ttccctcagaccgctgttctcagacgtcatctacctcccccacgaactaacttcgagaaa
ctgcaagatattctgcaaaaacggaaaggcctcaccctggacgtctccagctcgggtgcc
ttggcgaagtctttggaccaatgcctggaccccaaagaacccgccttcaacactctggtc
cggataatggcgacaagatgtatgctttccgcggagtacttcaattccggaagcgtcgcc
cgcgatacttttggacattatggactcgccagccccatctacacgcatttcacgagtccc
atccggcgttatgcagatgtactcgttcatcgtcaattatctgcagcaatctcgtattgg
cccttgcatccaagtttacactcgaaatcgcacgttgaacgtgttctcgacgtcgtgaat
cggcggcatcgcatggcccagatggcgggccgggctagcgtcgagttttatgtcggtttg
gcgctgaagagtcgtgcggagagacagggtgatgtcaaagaggaagcgtttgttatccga
acgttcaagaacggtgtaggagtgttcgtccataagctgggtttagaagggctggttatg
ttcaagcgggatgtcaagttcgacgccgacaattatacagtatccgtaccatcaacgaac
ggcacagaggttcctatatctgtcttcgacaaggttgtagttcacatggaagtggagaag
gataggaatacgcaaagggggaaggtgaagatgagcttggtggaacctgttgattcccgg
gccctgtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (32)   

Download RDF
DBGET integrated database retrieval system