KEGG   Pseudomonas syringae pv. tomato DC3000: PSPTO_1253
Entry
PSPTO_1253        CDS       T00118                                 
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
  KO
K03732  ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
Organism
pst  Pseudomonas syringae pv. tomato DC3000
Pathway
pst03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pst00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PSPTO_1253 (rhlB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pst03019]
    PSPTO_1253 (rhlB)
Enzymes [BR:pst01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     PSPTO_1253 (rhlB)
Messenger RNA biogenesis [BR:pst03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     PSPTO_1253 (rhlB)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII UTP25
Other DBs
NCBI-ProteinID: AAO54778
UniProt: Q887N8
Position
complement(1375533..1376726)
AA seq 397 aa
MEPQEGKTRFHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKGKDAIGRAQTGTGKTA
AFLISIIEQLTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAADLTKYTNLNVMTFVGG
MDFDKQLKQLEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVR
QIIRQTPHKGERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESLNVASDNVEQHIYAVAG
ADKYKLLYNLVTDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLE
GFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGADGVSISFA
GEDDSYQLPAIEEKLGRKISCETPPTHLLRAVVRQTN
NT seq 1194 nt   +upstreamnt  +downstreamnt
gtggagccacaggaaggcaagacccgcttccatgacttcaacctggcccccgaactgatg
cacgcgattcaggaccttggttttccctattgcacgccgatccaggcgggtgtgctgggt
ttcaccctcaagggcaaggacgccatcggccgcgcccagacaggcaccggcaagaccgct
gcgttcctgatctcgatcatcgagcaactgacccagacaccgccgccggcagagcgctac
atgggcgaaccccgcgcactgatcatcgcgccgacccgcgaactggtggtgcagatcgcc
aaggacgccgccgacctgaccaaatacaccaacctcaacgtcatgacgtttgtcggtggc
atggacttcgacaaacagctcaagcagcttgaagcgcggcactgtgacattctggtcgcc
acgccgggtcgcctgctggacttcaaccagcgcggcgaagtgcacctggacatggtagag
gtgatggtgctcgatgaagccgaccgcatgctcgacatgggcttcatcccgcaggtccgg
cagatcattcgccagaccccgcacaagggcgaacgccagaccctgctgttctccgcgacc
ttcaccgaagacgtgatgaaccttgccaagcagtggacgaccgatccttccatcgtcgag
atcgaatccttgaatgtcgccagcgacaacgtcgaacagcatatctatgccgttgccggt
gccgacaaatacaagttgctctacaacctggtcaccgacaacggctgggaacgggtcatg
gtctttgccaaccgcaaggatgaagtgcgccgcatcgaagagcgtctggtacgcgatggc
gtcaacgccgcgcaactgtcaggcgatgtgccgcagcacaagcgcatcaagacccttgaa
ggtttccgcgaaggcaagatccgcgtactggtcgccaccgatgtggccggtcgcgggatt
cacatcgacggcatcagccacgtgatcaacttcaccctgccggaagttccggacgactac
gtgcaccgcatcggccgtaccggtcgcgcaggggccgatggcgtctcgatcagcttcgcc
ggggaagacgactcctaccagttgcccgccatcgaagagaagctgggccgcaagatcagc
tgtgaaacaccgccgactcatctgctcagagcagtcgtgcgacaaaccaactga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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