KEGG   Plautia stali symbiont: E05_36580
Entry
E05_36580         CDS       T03051                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
psts  Plautia stali symbiont
Pathway
psts03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:psts00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    E05_36580
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:psts03400]
    E05_36580
Enzymes [BR:psts01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     E05_36580
DNA repair and recombination proteins [BR:psts03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      E05_36580
SSDB
Motif
Pfam: MFD_D3 TRCF DEAD UvrB_inter Helicase_C CarD_TRCF_RID ResIII UB2H SNF2-rel_dom ERCC3_RAD25_C RecG_dom3_C
Other DBs
NCBI-ProteinID: BAN98424
UniProt: U3U0U6
Position
2909236..2912691
AA seq 1151 aa
MSDLMSEQSRYTLPAKAGDHRQLGQLVGAAQAVECASITERHSGPVLMITPDMQSALRLQ
EEIRQFTDLPVTNLADWETLPYDSFSPHQDIISARLSTLYQLPTLTRGMLILPVNTLMQR
VCPHSFLHGHALVMQQGQKLSRDALRDQLEQAGYRHVDQVMEHGEYATRGALLDLFPMGS
DQPYRIDFFDDEIDSLRLFDVDSQRTLEAVSAINLLPAHEFPTDKAAIELFRSRWRETFD
VRREPEHVYQQVSKDTLPAGIKYWQPLFFEQELPTLFSYLPASTLVLNSGDLHASAERFW
QDANARYENRRIDPMRPLLEPATLWLRPDALLSELKSWPRMQLSAETLPEKAANSNLGYQ
PLPELTVQAQAKAPLDLLRQFLEQFTGQVIFSVESEGRRESLQELLSRIKLRPQPIDRFD
QADEQPYSLMIGASERGFIDTQRQRALICESDLLGEHVSRRRQDNRRTINPDILIRNLAE
LHPGQPVVHLEHGVGRYIGLTTLEAGGIVAEYLMLSYADDAKLYVPVSSLHLISRYAGGA
DENAPLHKLGSDAWSRARQKAAEKVRDVAAELLGIYAQRAAKAGFAFKHDREQYQLFCEG
FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRVAFLAVENGKQVAVLV
PTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQAQVLEQASEGRIDILIGTHKLLMS
DLKWRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSII
ATPPARRLAVKTFVREYDSLVVREAILREVLRGGQVYYLYNDVENIEKAAQRLAELVPEA
RIAIGHGQMRERDLERMMNDFHHQRFNVLVCTTIIETGIDVPSANTIIIERADHFGLAQL
HQLRGRVGRSHHQAYAWLLTPPPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAG
ELLGEDQSGQMETIGFTLYMELLENAVDALKAGREPSLEDLTSNQTEIELRMPALLPDDF
IPDVNTRLSLYKRIASATDEQELAELKIGMIDRFGKLPDAARNLLDIAALRLVARQLGLR
KIEASEKGGFFEFAPQNQVDPGWLIDLLQKDAKQWKLDGPTRLKFTRDLSERKTRMEWVQ
NFVAELAKNRV
NT seq 3456 nt   +upstreamnt  +downstreamnt
atgtcggaccttatgtcggaacagagtcgttataccctgcctgctaaagcaggcgaccat
cgtcagctcggtcagctggtcggcgccgcgcaggcggttgagtgtgccagcatcaccgaa
cgccacagcggtccggtgttaatgatcaccccggatatgcaatcggccctgcggctgcag
gaggagatcaggcagtttaccgatctgccggtcaccaatcttgctgactgggaaacactg
ccctacgacagcttctcgccccatcaggacattatttccgcccgtctttctacgctgtac
cagctgcccaccctgacgcgcggcatgctgattctgccggtcaatacgctgatgcagcgc
gtttgcccgcacagcttcctgcacggccatgcgctggtgatgcagcagggccagaaactg
tcgcgcgatgccctgcgcgaccagctggagcaggccggttatcgccatgtcgatcaggtg
atggagcatggcgagtacgcgacgcgcggcgcgctgctcgatctgttcccgatgggcagc
gatcagccttatcgcatcgatttctttgatgatgagatcgacagcctgcgcctgtttgac
gtcgactcacagcgcacgctggaggcggtgagcgccatcaacctgctgccggcgcatgaa
tttcccaccgacaaagcggccattgagctgttccgcagccgctggcgtgaaaccttcgac
gtgcggcgcgaacctgagcacgtctatcagcaggtgagcaaagacacgctgccagccggg
attaagtactggcagccgctatttttcgagcaggaactgcctaccctgtttagctatctg
cccgccagcacgctggtgctgaacagcggcgatctgcacgccagcgctgaacgtttctgg
caggatgctaacgcgcgctatgaaaatcgacgcatcgatcctatgcgcccgctgctggaa
ccggccacgctgtggctgcgcccggatgcgctgctcagcgagctgaaaagctggccgcgc
atgcagctcagcgctgagacgctgccggagaaagccgcgaacagtaatctgggctatcag
ccattgccagagctgacggtgcaggcgcaggctaaagcgccgctcgatctgctgcgccag
ttcctcgaacagtttaccggtcaggtgattttctcagtagaaagcgaaggtcgccgcgag
agcctgcaggagctgctctcccgcatcaaactgcgcccgcagccgatcgatcgcttcgat
caggccgatgagcagccgtacagcctgatgattggtgccagcgagcgcggctttattgat
acccagcgccagcgcgcgctgatttgcgaaagcgatctgctcggcgagcacgtcagccgg
cggcgtcaggacaatcgccgcactatcaatccggacatactgattcgtaacctcgccgag
ctgcacccgggccagccggtggtgcatcttgaacacggtgtggggcgctacattggcctg
accacactggaagccggcggtatcgtggctgagtatctgatgctatcctatgccgacgat
gccaaactttacgtcccggtgtcatcgctgcatctgatcagccgttacgccggcggcgcc
gatgaaaatgcgccgctgcacaagctgggcagtgatgcctggtcacgcgcgcgacagaaa
gcggcggagaaagtacgcgacgtggccgctgagctgctgggtatctatgcccagcgcgcg
gccaaggctggctttgcctttaagcacgaccgcgagcagtatcagctgttctgtgaaggt
tttccgtttgaaaccacgccggatcaggcgcaggcaattaacgccgtgctcagcgatatg
tgccagccgctggcaatggaccgcttggtgtgcggcgacgttggctttggtaaaaccgaa
gtggcgatgcgcgtcgccttccttgcggtggagaacggcaaacaggtggcggtgctggtg
ccaaccaccctgctggcgcagcagcactacgacaacttccgcgaccgcttcgccaactgg
ccggtgcgcattgagatgctgtcgcgcttccgtagcgccaaagagcaggcgcaggtgctt
gagcaggccagcgagggcagaattgatattctgatcggcacccacaagctgctgatgagc
gatctgaagtggcgcgatctcggtttgctgatcgtcgatgaagagcaccgtttcggcgtg
cgtcacaaagagcgcatcaaagcgatgcgcgctgacgtcgatattctgacgctcaccgca
acgccgattccgcgcaccctgaacatggcgatgagcggcatgcgcgatctgtcgattatc
gccacgccaccggcgcgccgtctggcggtgaaaaccttcgtgcgtgaatatgacagcttg
gtggtccgcgaagcgatcctgcgtgaagtgctgcgcggcggtcaggtttactatctctac
aacgacgtcgagaacatcgagaaagcggcgcagcggctggccgagctggtgcctgaagcg
cgcatcgccatcggccacggtcagatgcgtgagcgcgatctggaacggatgatgaacgat
ttccaccaccagcgcttcaacgtgctggtgtgcaccaccatcatcgaaaccgggatcgat
gtgcccagcgctaataccatcatcattgagcgcgccgaccatttcggtctggcgcagctg
catcagctccgtggccgcgtcggccgttcgcaccatcaggcctatgcctggctgctgacg
ccgcccccgaaagcgatgacgaccgatgcccagaagcgactggaagcgattgcctcgctg
gaggatctgggcgctggctttgcgctggcgacgcacgacctggaaattcgcggtgccggt
gagctgctgggtgaagatcagagcggtcagatggagaccattggcttcacgctctacatg
gagctgctggaaaacgcggtggatgcgctcaaggccggacgtgagccgtcgctggaagat
ctcaccagcaatcagacggagattgagctgcgcatgcctgccctgctgccggatgatttt
attccggacgtcaatacgcgcctgtcgctgtataaacgcatcgccagtgcgaccgatgaa
caggagctggccgagctgaaaattgggatgattgatcgcttcggcaagctgcccgacgcc
gcgcgtaacctgctggacatcgccgcgctgcgcctggtggcgcgccagctggggctgcgc
aaaatcgaagccagcgaaaaaggcggcttctttgagttcgcgccgcagaatcaggtcgat
cccggctggctgatcgacctgctgcagaaagatgcgaagcagtggaagctggatggcccg
acacgactgaaattcacccgcgatctcagtgaacggaaaacgcgcatggaatgggtgcag
aatttcgtcgccgagctggcgaagaaccgggtctaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (29)   

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