KEGG   Stutzerimonas decontaminans: UIB01_07755
Entry
UIB01_07755       CDS       T03366                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
pstu  Stutzerimonas decontaminans
Pathway
pstu03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pstu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    UIB01_07755
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pstu03400]
    UIB01_07755
Enzymes [BR:pstu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     UIB01_07755
DNA repair and recombination proteins [BR:pstu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      UIB01_07755
SSDB
Motif
Pfam: TRCF DEAD UvrB_inter MFD_D3 Helicase_C CarD_TRCF_RID ResIII UB2H SNF2-rel_dom ERCC3_RAD25_C AroM AAA_22
Other DBs
NCBI-ProteinID: AHY42382
UniProt: A0A023WQ89
Position
complement(1629929..1633375)
AA seq 1148 aa
MSVLRLPPLPAASGKQHWGNLPGAALSLAIAEAASNAKRFTLLLTADSQSAERLQEELAF
FAPGLPVLHFPDWETLPYDIFSPHQDIVSQRISALYQLPELSHGVLVVPITTALHRLAPK
RFLLGSSLVLDVGQKLDVEQMRLRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSPLPY
RIDLFDDEIETLRTFDPENQRSIDKVESIRLLPAREFPLKKEAVTGFRARFRERFDVDFR
RCPIYQDLSTGITPAGIEYYLPLFYEETATLFDYLPEDSQVFSLPGIEQAAEQFWSDVRN
RYEERRVDPERPLLPPAELFMPVEDCFARLKLWPRVVASQQDVEPGIGRERFNAHALPEL
AIESKANEPLGKLRQFLESYPGRVLFTAESAGRREVLLELLARLKLRPQEVDGWPGFLAS
DERLAITIAPLDEGLQLDDVALVAESPLFGQRVMQRRRREKGRDAGENVIKNLTELREGS
PVVHIDHGVGRYQGLVTLEIEGQAQEFLLLQYAEDAKLYVPVASLHLIARYTGSDDALAP
LHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFKDPQVDYETFAAGFPFEE
TPDQQAAIDAVREDLLSAKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVGVLVPTTLL
AQQHYNSFRDRFADWPVRVEVMSRFKSAKEVQNAIAELAEGKIDILIGTHKLLQDDVKFS
NLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMSIAGMRDLSIIATPPA
RRLSVRTFVMEQQNTVIKEALLRELLRGGQVYYLHNDVKTIEKCAADLQALVPEARVAIG
HGQMRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIERADKFGLAQLHQLRG
RVGRSHHQAYAYLLTPTRKAMTDDAQKRLEAIANAQDLGAGFVLATHDLEIRGAGELLGE
GQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGGGPEINLRLPALIPEDYLPDVH
ARLILYKRIANAADEDGLKELQVEMIDRFGLLPEPTKNLVRLTLLKLQSEKLGIIKIDAG
PQGGRIEFSADTSVDPMVLIKLIQSQPKRYKFEGATLFKFQVPMERPEERFNTLEALLER
LAPSELGS
NT seq 3447 nt   +upstreamnt  +downstreamnt
gtgtccgtcttgcgccttccacccctgcctgccgccagcggcaagcaacactggggcaat
cttccaggagccgcgctgagcctggcgattgccgaagcagccagcaacgccaaacgcttc
acgttgctcctcactgccgacagccagagtgccgagcgcctgcaggaagagctcgctttc
ttcgcaccgggactgccggtgctgcatttccccgattgggaaacgctgccctacgacata
ttttcgccacatcaggacatcgtctcccagcgcatttccgcgctctaccaactgccggaa
ctgagccacggcgtgctggtagtgccgatcaccaccgccctacacaggctggcgccgaag
cgcttcctgctgggttcgagtctggtgctggacgtcgggcagaagctcgacgtcgagcag
atgcgtctgcgtctggaagcggccggctatcgctgcgtggacacggtctacgagcatggc
gaattcgccgtacgcggtgcgttgatcgatttattccccatgggcagccccctgccctac
cgcatcgacctgttcgatgacgagatcgaaacactgcgcaccttcgatccggaaaaccag
cgttcgatcgacaaggtggagtcgatccgcctgttgccggcacgcgagttccccctgaag
aaagaagcggtcactggcttccgcgcgcggttccgcgagcgtttcgacgtcgatttccgc
cgctgcccgatctatcaggatctctccaccggcatcaccccagcaggtatcgagtactac
ctgccactgttctatgaagaaaccgcgacgctgttcgattacctgcccgaagacagccag
gtgttctcgctgcccggcatcgaacaggccgccgagcagttctggagtgatgtacgcaat
cgctacgaggaacgtcgcgtcgaccccgagcgcccgctgttgccgcctgccgagctgttc
atgccggtggaggactgcttcgctcgcctgaaactctggccacgggtggtcgccagccag
caggacgtcgagccaggtatcggccgtgaacgcttcaatgcccacgcgctgccagaattg
gccatcgagtccaaggccaatgagccgctgggcaagctgcggcaattcctcgaaagctat
ccgggacgcgtgctgttcactgccgaatccgctggtcgccgcgaggtgttgctggagctg
ctggcacggctgaagttgcgtcctcaggaagtcgacggctggccgggctttctcgccagc
gacgaacgtctggccatcaccatcgccccgctcgacgaaggcctgcaactggacgacgtg
gcactggtcgcggaaagccccctgttcggccagcgcgtcatgcaacgccgacgcagggag
aagggtcgcgacgctggcgaaaacgttatcaagaacctcaccgagctgcgcgaaggctcg
ccggtggtgcacatcgatcacggtgtcggtcgctaccagggattggtcaccctcgaaatc
gaaggccaggcgcaggaattcctgctgctgcagtacgccgaggacgccaagctctacgtg
ccggtcgccagcctgcacctgatcgcccgctatacaggcagcgacgacgcgctcgcgcca
ctgcaccggctcggttcggaaacctggcagaaggccaagcgcaaggccgccgagcaggtc
cgcgacgttgccgccgagctgctcgacatctacgcccgccgcgcggcacgcgagggttat
gcattcaaagacccgcaggtcgactacgaaacgttcgccgcaggctttccgttcgaggaa
acgcccgatcagcaggccgccatcgacgcggtgcgcgaggacctgttgtcggccaagccg
atggaccgcctggtctgcggcgatgtcggcttcggcaagaccgaagtcgccatgcgcgcc
gcgttcatcgccgtccatggcggccggcaggttggcgtactggtgccgaccaccctgctc
gcccagcagcattacaacagcttccgcgaccgcttcgccgactggccggtgcgggtcgag
gtgatgagccgcttcaaatccgccaaggaggtgcagaacgctatcgccgagctcgccgag
ggcaagatcgacatcctcatcggcacccacaagctgctgcaggacgacgtcaagttcagc
aacctgggcctggtcatcatcgacgaggaacaccgcttcggcgtacgccagaaggaacaa
ctcaaggcgctgcgcagcgaggtggacatcctcaccctgaccgccacgccgattccgcgc
acgctgaacatgtccatcgccggcatgcgcgacctgtcgatcatcgccacgccgccggcg
cgccgcctgtcggtgcgcaccttcgtcatggaacagcagaacaccgtgatcaaggaggcg
ctgctgcgcgagctgttgcgcggcggccaggtctattacctgcacaacgatgtgaagacc
atcgagaaatgcgccgccgatctgcaggcactggtgccggaggcacgcgtcgcgatcggc
cacgggcagatgcgcgagcgtgacctcgaacaggtcatgagcgacttctaccacaagcgc
ttcaacgtgctggtggcctcgaccattatcgaaaccggcatcgacgtgccgagcgccaac
accatcatcatcgagcgcgccgacaagttcggcctggcgcagctgcaccagctgcgtggc
cgggtcgggcgcagtcaccaccaggcctatgcctatctgctcacccctactcgcaaggcc
atgaccgacgacgcgcagaagcgcctggaggccatcgccaatgcccaggacctcggtgca
ggcttcgtcctggccacccacgacctggaaatccgcggcgccggcgagctgctcggcgag
ggccagagcggacagatccaggccgtcggcttcactctttatatggaaatgctcgagcgc
gcggtcaaagccatccgcaagggcgagcagccgaacctggagcagccgctcggcggcggc
ccggagatcaacctgcgcctgccggcactgattccggaggactatctgccggacgtgcac
gcccgtctgatcctctacaagcgtatcgccaatgccgccgacgaggatggcttgaaggaa
ctgcaggtggagatgatcgaccgcttcggcctgctgcccgagccaaccaagaatctggtg
cgcctgacgctgctcaagctgcagtcggaaaagctcggcatcatcaagatcgacgccggc
ccgcagggtgggcgcatcgagttctcggcagatacctcggtcgatccgatggtgctgatc
aagctgatccagagtcagcccaagcgctacaagttcgagggcgccacgctgttcaaattc
caggtgccgatggaacgcccggaagagcgtttcaataccctggaagcgctcctcgaacga
ctcgcgcccagcgaactgggatcctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (22)   

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