KEGG   Stutzerimonas decontaminans: UIB01_20220
Entry
UIB01_20220       CDS       T03366                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
pstu  Stutzerimonas decontaminans
Pathway
pstu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pstu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    UIB01_20220
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pstu03019]
    UIB01_20220
   03400 DNA repair and recombination proteins [BR:pstu03400]
    UIB01_20220
Enzymes [BR:pstu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     UIB01_20220
Messenger RNA biogenesis [BR:pstu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     UIB01_20220
DNA repair and recombination proteins [BR:pstu03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      UIB01_20220
SSDB
Motif
Pfam: Helicase_C DEAD RecQ_Zn_bind ResIII EccE
Other DBs
NCBI-ProteinID: AHY44675
UniProt: A0A023WY54
Position
complement(4261186..4263111)
AA seq 641 aa
MIEQTLVQTFGYDRFRTGQEQAIRAVVAGRSVAAIFPTGSGKSLCYQLPALLLPHLTLVV
SPLLALMQDQLAFLHRNGIAAGSIDSAQSREQASETMARAKSGELKILMISVERLKNERF
RNFISQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFNIPQVLLLTATATPPVIAD
MQAKFSIAADDVVTTGFYRPNLNLLVEPVSGLNKQRRLVEWLADKGGQPTIVYVTQQKTA
EQVAEHLAQRGFPASAYHAGMAHELREAIQRRFMAGELNCIVATIAFGMGIDKADIRNVV
HYDLPKSVENYSQEIGRAGRDGKPSDCLVLANRDSLSVLQNFVYGDTPERKGIRCVLDEL
LQAGSGGQWELMLNQLSDQSNIRQLPLKTLLVQLELRGIIAPRFAYFAEYRFKYLLEPEV
LVAKFEGERRQFVEAIVHSSARARTWCTLDFDALYQQHGADRARVVKALEYFQEKGWIEL
ESKQMTEVYALLDTGFDAEALSDELHAYFKQHEASEITRIDNMLALFESAECLSQRLAAY
FGDRQAPQHCGHCSVCRGQVAQLPEPPTLAPLDQTDLAGHCVEFSQRYTQLQGDAPSTEC
LTRFLCGISVPVFTKLKARQIPGFASLEAYPYAEVRARLTR
NT seq 1926 nt   +upstreamnt  +downstreamnt
atgatcgagcagaccctcgtccagacattcggctacgaccgcttccgtaccggccaggag
caggccattcgcgctgtggtggccggccgttcggtggccgcgatctttcctaccggctcc
ggaaaatccctgtgctaccagctgccggcgctgctgttgccgcatctgaccctggtggtc
tcacccttgttggcactgatgcaggaccagctggcctttctgcaccggaacggcattgcc
gccggcagcatcgactcggcgcagagccgcgagcaggccagcgagaccatggcccgggcc
aagtccggtgaactgaagatcctgatgatttcggtggagcgactgaagaacgaacgcttc
cgtaacttcatcagccaggtgccgatctcgctgctggtagtggacgaggcgcactgcatc
tccgagtgggggcacaacttccgcccggattacctcaagcttcccgactaccagcgtcag
ttcaacattccccaagtgctgctgctgaccgccacggcgacgccgccggtgatcgccgat
atgcaggccaaattctcgattgcggcggacgacgtcgtgactactggcttctaccggccc
aacctcaatctgctggtggagccggtcagcggcttaaacaagcagcgccggctggtggaa
tggctggccgacaagggtggtcagccgaccatcgtctacgtcacccagcagaagaccgcc
gagcaggttgccgagcatctggcgcagcgcggcttcccggccagcgcctaccacgccggc
atggcccatgagttgcgtgaggcgatccagcgccgcttcatggccggcgagctgaactgc
atcgtcgccaccatcgccttcggcatgggcatcgacaaggcggacatccgcaacgtggtg
cactacgacctgcccaagtcggtggagaattacagtcaggagatcggtcgagccgggcgc
gatggcaagccatcggactgcctggtgctggccaaccgcgacagcctcagcgtgctgcag
aacttcgtctacggcgatacgccggagcgcaagggcatccgctgcgtactcgacgagctg
ctgcaggcgggctcaggcggacagtgggagctgatgctcaaccagctatcggaccagagc
aacatccgccagctgccgctgaaaaccctgctggtgcagctggagctgcgcggcatcatc
gcgccacgcttcgcctatttcgccgagtaccgcttcaagtacctgctcgaacccgaggtg
ctggtggcgaaattcgaaggcgagcggcggcagttcgtcgaggccatcgtgcacagctca
gcgcgggcacggacctggtgcactctggatttcgacgcgctctatcagcagcacggcgcc
gaccgcgcgcgggtggtcaaggcactggagtacttccaggaaaagggctggatcgagctg
gagagcaagcagatgaccgaggtctatgcgctgctcgacacgggcttcgatgccgaagct
ctgagcgacgagctgcacgcctatttcaagcagcacgaagccagtgaaatcacccgcatc
gacaacatgctggcgctgttcgaatccgccgaatgcctgagccagcggctggccgcctat
ttcggtgatcgccaggcaccacagcactgcgggcattgctcggtctgtcgtggacaggtc
gcgcaactgccggaaccgccgacgctggcgccactggatcaaacggacctggccggccac
tgcgtcgaattcagtcagcgctacacgcagctacaaggcgatgcgcccagcaccgaatgc
ttgacgcgctttctctgcggcatcagcgtgccggtgttcaccaagctcaaggcgcgacag
atccccggtttcgcctcgctggaggcttatccctacgcagaggttcgcgcgcgcctgacg
cgctaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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