KEGG   Pseudoalteromonas tetraodonis: PTET_a1268
Entry
PTET_a1268        CDS       T05282                                 
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
ptd  Pseudoalteromonas tetraodonis
Pathway
ptd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ptd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PTET_a1268 (rhlE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptd03019]
    PTET_a1268 (rhlE)
Enzymes [BR:ptd01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     PTET_a1268 (rhlE)
Messenger RNA biogenesis [BR:ptd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     PTET_a1268 (rhlE)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 CMS1
Other DBs
NCBI-ProteinID: ATD02736
Position
I:1209396..1210793
AA seq 465 aa
MSFDGLGLSQSLVNAVLEKGYETPTPIQAQAIPAIIARRDVMAAAQTGTGKTAGFTLPLI
ERLSSGTKAKSNHVRALILTPTRELALQVSENVEEYAKHSDVSSFVVYGGVKINPQMQRL
RKGVDILVATPGRLIDLHNQNAVKFDSIEVLVLDEADRMLDMGFIHDIKRLIAKMPEKRQ
NLMFSATFSDDIRALAKGLINDPVEISVAAKNTTAKSVTQCVYAVDKARKTALLSHLIRS
NNWQQVLVFSRTKHGANRLVKQLERDDIVGAAIHGNKSQGARVKALEGFKSGEVRVLVAT
DIVARGLDIVELPHVVNYDLPNVYEDYVHRIGRTGRAGASGHAISFVTVDDAVDLYGIER
FIGELIPRAEEEGFEPANPVAERALDARPLPAKKPKKKQPFNKPKSDSSKPNSKKPNNGG
NGTGPRRGGSKKPAAKTDENAQNPWAKRQSVGGTGQRRRRPANND
NT seq 1398 nt   +upstreamnt  +downstreamnt
atgagttttgatggtttaggtttatcacagtctttagttaatgcggttttagaaaagggc
tatgaaacgccaacgcctattcaggctcaagctatcccagcaattattgcgcgtcgcgat
gtaatggccgcagcacaaacaggtaccggtaaaaccgctggttttactttgccactaatt
gagcgtttatcgtcgggcactaaagcaaaaagtaatcatgtacgtgcgcttattttaacg
ccaacccgagagcttgcgttgcaagtaagcgaaaacgttgaagaatacgctaagcattct
gatgtgagttcgtttgtggtttacggtggtgtaaaaattaacccacaaatgcagcgcctg
cgtaaaggggttgatattttagtggccacacctgggcgtttaattgatttacacaatcaa
aacgcggttaaatttgatagcattgaagtactggttttagatgaagccgaccgtatgtta
gacatgggctttatccacgacattaaacgcttaattgcaaaaatgcctgaaaaacgtcaa
aacttaatgttctcagcaaccttttctgacgacattcgtgcattggccaaagggttaatt
aacgatccggttgaaatttcagtcgctgccaaaaacacgactgctaaaagcgtgactcaa
tgcgtgtacgcagtagataaagcgcgtaaaacggccttattaagccatttaattcgtagc
aacaattggcaacaagtactggtatttagccgtactaaacacggtgctaaccgtttagtt
aagcaactggaacgtgatgatattgttggcgcagcaatccatggtaataaatctcagggc
gcacgtgttaaagcattggaaggctttaaaagtggtgaagtgcgcgtattagtggcaacc
gatattgttgcccgtggtttagatattgttgagcttccacacgtagttaactacgactta
cctaatgtatatgaagattatgttcaccgtattggccgaactggtcgtgcgggtgcatca
gggcatgccatttcgtttgtaacggtcgacgatgcagtggatttatacggtattgaacgc
tttattggcgagttaattcctcgtgctgaagaagaaggctttgaaccggctaaccctgtt
gctgagcgcgccctcgatgctcgcccactgcctgctaaaaagccaaagaaaaaacaacca
tttaataagcctaaatctgatagcagcaaacctaatagcaaaaagcctaacaatggtggc
aatggtacaggcccacgtcgtggtggttctaaaaagccagcagcaaaaacagacgagaat
gcacaaaacccttgggcaaaacgccaatcggtagggggcactggtcagcgccgtcgtcgt
ccagcaaataacgactaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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