KEGG T05282: PTET

Pseudoalteromonas tetraodonis: PTET_a1589

Entry

PTET_a1589        CDS       T05282

Symbol

topA

Name

(GenBank) DNA topoisomerase I

K03168

DNA topoisomerase I [EC:5.6.2.1]

Organism

ptd Pseudoalteromonas tetraodonis

Brite

KEGG Orthology (KO) [BR:ptd00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ptd03032]
    PTET_a1589 (topA)
   03400 DNA repair and recombination proteins [BR:ptd03400]
    PTET_a1589 (topA)
Enzymes [BR:ptd01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     PTET_a1589 (topA)
DNA replication proteins [BR:ptd03032]
Prokaryotic type
  DNA Topoisomerases
   PTET_a1589 (topA)
DNA repair and recombination proteins [BR:ptd03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      PTET_a1589 (topA)

SSDB

Motif

Pfam:

Topoisom_bac Topo_Zn_Ribbon TOP1_ZnF Toprim zf-C4_Topoisom LysW-like_globular Toprim_2 Toprim_4 Zn_ribbon_recom

Other DBs

NCBI-ProteinID:

ATD03021

Position

I:1547142..1549850

AA seq 902 aa
MGKSLVIVESPAKAKTINKYLGNDFIVKSSIGHVRDLPTSGSGKNKAPASKTPAEVRKMP
PDEKAAYKQQRDYTNLVARMGIDPEKGWEPHYEILPGKEKVVQELQKLAQNADQIYLATD
LDREGEAIAWHLQEIIGGEPEKYKRVVFNEITKNAIQQAFETPGELNTDMVYAQQTRRFL
DRVVGFMVSPLLWAKVARGLSAGRVQSVAVRLLVEREREIKAFIPEEFWDIHADVKNSES
DLRLEVTKQADKPFKPVNEAQASAAVKSLENAEYKVVSVEEKPSKSRPSAPFITSTMQQA
ASTRLGYGVKKTMMLAQRLYEGGYITYMRTDSTNLSKDAVEMCREYVTNEFGAKYLPADP
INYSSKGNAQEAHEAIRPSSVSVLSGHVEGVDADAKKLYELIWRQFVACQMVPAEYDLTT
LTVAANDFTLKAKGRVLRFDGWTKVQPAVRKKNEEDQSLPAVKQGEVLTLVELDPKQHFT
KPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFFAEKMGEIVTDRLV
ENFTDLMNFDFTAKMEGRLDDIAEGERVWTQVLDKFYADFSTQLNIAKGEPDEGGMRLNQ
MVETDIDCPTCGRKMGIRTASTGVFLGCTGYNLPPKERCTTTMNLVSGDEAVAADVEDVE
TETLMQMKRCPICETAMDSYLIDETRKLHVCGNNPACHGHVVEEGTFKIKGYDGPIIECD
KCGADMELKSGRFGKYFGCNNDECKNTRKLLKNGEAAPPKEDPVHIPELECEKSEAYFVL
RDGAAGIFLAANTFPKSRETRAPKVEELQRFRDRISPKFYYLADAPAKDPDGNLAIVRYS
RKNKSQYVMTEVDGKATGWTAHYEGGKWVEEAKKKAAPKKKAAAKKAPAKSKAKAKVKKD
DE

NT seq 2709 nt +upstreamnt +downstreamnt
atgggcaaatcgctagtaattgtagagtcacctgctaaggctaaaacaattaataaatac
ttaggtaatgattttatcgttaagtccagtattggacacgtacgagatttacctacttca
ggttctggcaaaaacaaagcaccagcaagcaaaacgcctgctgaggtgcgtaaaatgcca
cctgatgagaaagcagcgtataaacagcaacgtgactatactaacttagtcgcgcgaatg
ggcatcgatcctgaaaaaggatgggagccacattacgaaatattgccgggtaaagaaaag
gttgttcaagaattacaaaagcttgcccaaaatgctgatcaaatctatctcgcaacggat
ttggatagagaaggggaagctattgcttggcaccttcaagaaattattggtggcgagcca
gaaaaatataagcgtgttgtttttaacgaaatcactaaaaatgcaatacaacaagcattc
gaaaccccaggtgagttaaacaccgacatggtttatgcacagcagacccgtcgcttctta
gaccgtgttgttggctttatggtatcgcccctattgtgggctaaagtagcgcgtggttta
tcagcgggtcgagttcaatctgttgcagtgcgtttattagttgaacgcgaacgtgaaatt
aaagcatttattcctgaagaattttgggatattcatgccgatgttaaaaatagcgagtct
gacctacgtttagaagtcactaaacaagcagacaagccatttaagccagtaaatgaagct
caggctagtgcagcagttaaaagccttgagaatgccgaatataaagttgtcagcgttgaa
gagaaaccaagtaagagccgtccaagtgcgccatttattacttcaacaatgcaacaagca
gcaagtacccgattaggttatggcgttaaaaagaccatgatgcttgcccagcgtttatac
gaggggggttatattacttatatgcgtaccgattcaactaacttatcgaaagatgcggtt
gaaatgtgtcgcgaatacgtaaccaatgagtttggtgccaagtatttacctgctgatccg
attaactatagctctaaaggtaatgcacaagaggcgcacgaagcgattcgtccttctagc
gtatcagtgctttctgggcatgttgaaggtgtggatgccgatgcgaaaaagctttatgag
cttatttggcgtcagtttgtggcctgtcaaatggtgccagctgagtacgatttaaccacc
ttaacggtcgctgccaacgattttacattgaaagcaaaaggacgtgttttacgttttgat
ggttggactaaagtgcaaccggcagtacgtaaaaagaatgaagaagatcaatcgctgcct
gctgttaagcaaggcgaggtgctcacgttagttgagcttgatcctaagcagcactttact
aagccaccggctcgttttagtgaagcaagcttagttaaagagctcgagaaacgtgggatt
ggtcgtccatctacgtatgcctctattatatcaacgatacaagaccgtggttatgtacga
gtagaaaatcgtcgctttttcgctgaaaaaatgggggagattgtcaccgatcgccttgtt
gaaaactttaccgatttaatgaacttcgattttaccgctaaaatggaaggccgtttagat
gatatcgccgaaggtgagcgtgtttggacgcaagttctcgataagttttacgctgatttt
tcaacgcaattgaatattgccaaaggtgaacccgatgaaggcggtatgcgtcttaatcaa
atggtagaaaccgacattgactgtccaacgtgtggcagaaaaatgggtattcgtactgct
tctacgggcgtattcttaggatgtactggttataacttgccacctaaagagcgctgtact
accactatgaacttagtgtcgggtgatgaagcggttgcagctgatgttgaagacgttgaa
acagaaacattaatgcaaatgaagcgctgtccaatttgtgaaacagcgatggattcatac
cttatcgatgaaacccgtaaactacacgtgtgtggtaataacccagcgtgtcatgggcat
gtggttgaagagggtacgtttaaaattaaaggttacgacggccctattattgaatgtgat
aaatgtggcgctgatatggaattaaaatcaggtcgatttggtaagtattttggctgtaac
aatgacgagtgtaaaaatacccgtaagttattaaaaaatggcgaagccgcgccaccaaaa
gaagatcccgttcatattcctgaattagaatgtgaaaagtctgaagcctattttgtatta
cgtgatggtgctgcaggtattttcttagcagcaaatacgtttcctaaatcacgagaaaca
cgcgcccccaaagtagaagagttacagcgttttagagatcgtatttcgcctaagttttac
tacttagctgatgcaccagctaaagatcctgatggtaatcttgctattgtgcgttacagt
cgtaagaataaatcacagtatgtaatgactgaggttgatggcaaagcaactggttggacg
gcacactacgaaggtggtaaatgggtagaagaggcaaagaaaaaagccgcgcctaaaaag
aaagccgccgctaaaaaagcgcctgctaaaagtaaagcgaaagcaaaagtaaaaaaagac
gatgaataa

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

Download RDF

DBGET integrated database retrieval system