KEGG   Phaeodactylum tricornutum: PHATRDRAFT_25506
Entry
PHATRDRAFT_25506  CDS       T01075                                 
Symbol
SMC1
Name
(RefSeq) hypothetical protein
  KO
K06636  structural maintenance of chromosome 1
Organism
pti  Phaeodactylum tricornutum
Brite
KEGG Orthology (KO) [BR:pti00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pti03036]
    PHATRDRAFT_25506 (SMC1)
Chromosome and associated proteins [BR:pti03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   Cohesin complex
    PHATRDRAFT_25506 (SMC1)
  Meiosis-specific proteins
   Cohesin complex and associated proteins
    PHATRDRAFT_25506 (SMC1)
SSDB
Motif
Pfam: SMC_N SMC_hinge AAA_21 AAA_29 ABC_tran
Other DBs
NCBI-GeneID: 7197261
NCBI-ProteinID: XP_002177808
JGI: 25506
UniProt: B7FTA5
Position
2:1337790..1341963
AA seq 1237 aa
MPVTSLELENFKSYAGLQTIGPFRDFTSVIGPNGAGKSNLMDAVSFVLGVQSRDLRSTVL
ADLVFRPPTTIGTTVSTTSTTPALRASATLVYADAVTGAETRFGRTIGVRGVGEYHLDGK
VVSWTDYEAALADIGVLVKARNFLVFQGDVEALARKSPAELTALVEQIAGSAGLADDYRQ
RHADKEQAQQNTVFLLQQQKTLRAERKLLKEQKTEADRFHQLLTEKADVETELYLWILYH
LDRDRHERDAVLGELRDERDAHRATEQTHAETLQQAKKQASAARRETGQRQQRRVELAAL
ADRLEPAVIQTTEEIKSLANKLAQDEKQVAKKQTEADTHRERIDAIAKEIADYRTQLTAL
ERDYDEIKANAAPVQLTPEQETRYEALRYQAAAASAAPRHALHAAQRRLEQARAHVATLQ
HTLQEAQAAQAETARDVQALDTRREKLTKSLANTTQDLQATEHELVQVQGQAQRVQVRRQ
ELDVDIEKLDASLREAKYDSTRSKDEECLVRAIASLQQHFTGVHGRLVDLCRPVSRKFNL
AVTVAAGKDMDAIVVDTKQTAFECIKYLREQRVGTATFLPLDSLQTPSPDSTERLRAHVA
KDGRYSLVADVIACDDAVHRAVQYAVGNTVVAEDLDAARELCFGSSSSRRGGRSEGNSPQ
SRVKAVTLGGAVISKAGTMTGGVTRDEDSKSGRWDAQNLHKIQEQKAQLEAEREALDTGG
ASNRRSGVGAGGSLGHASKIEELRNKVGNLRNKDQYSKSDLEFTKKQLEEKTVLLKSTEK
QLAKLEKQVAAGEKEFSKANTAVQKGIAAVKAAEDELLGDFRDETGLRDLNAYEEAIGKS
RDEFNERKRTFMEHIAQLEQQTKYESGRDLQQPIVRIEKRIKERKAALAKAKKKESELRK
KVDEAKANLAEAEIKVEEAIDNEKKFEEQVQDAQSALTEAQNERIRIDKAIGSEETALER
LRAKLHDTLQKAHVEEVLLPRVGDDNASQASSVDFSRMPSPLKQRMSDRDEKRMRKEFED
KLAKIAANIESITPNMKASEAFSTITDRLKGSSSDYEKSKEKSAKAAQAFQRVKAKRAKL
FNEAFNHIDEALKTIYTDMTKSSKHPLGGNAYLSLDDAEEPYKGGIKFNAMPPMKRFRDM
EQLSGGEKTVAALSLLFAIHSFHPAPFFIMDEIDAALDNVNLRKVCNYIKQRSQTDFQCI
VISLKDMFYEHSQGLVGIYRDVGTNSSHTLTLDLTKF
NT seq 3711 nt   +upstreamnt  +downstreamnt
atgcccgtcacgtcgctggaactcgagaacttcaagtcctacgcgggcttacaaaccatc
ggaccctttcgcgactttacgtccgtcattggccccaatggtgccggcaagtccaatctc
atggacgccgtcagtttcgtcctcggcgtacagtcccgcgatttgcgcagtaccgtcctg
gcggatctcgtctttcgtcctcccacgacgattggtactactgtgagtactactagtacg
acgcccgcactccgcgcgtcggccacgctcgtgtacgccgacgccgtcaccggcgccgag
acacgcttcggacggaccattggcgtccgcggagtcggggagtaccacctggacgggaag
gttgtttcctggacggactacgaagccgccctcgccgacattggggtcctcgtcaaggcg
cggaactttctcgtctttcagggagacgtggaagccttggcgcgcaagtcgccggcggaa
ctcaccgccctcgtcgagcaaattgccggatccgccggactcgcggacgactaccgccaa
cgacacgccgacaaggaacaagcgcagcagaataccgtctttctgttgcaacagcaaaag
acgctccgggccgagcggaaactactcaaggaacaaaagactgaggccgaccggttccac
caactactcacggaaaaagccgacgtcgagaccgagctctatttgtggatactctaccac
ttggaccgggaccgacacgagcgggacgccgtcctcggggaactccgcgacgaacgggac
gcccaccgcgccaccgaacaaacacacgccgagacactccaacaagccaaaaagcaagcc
agtgcggcccggagggagaccggacaacgccaacaacgccgggtggaactcgccgcactc
gcggatcgactagaacccgccgtcatacaaaccacggaagaaatcaaatccctcgctaac
aaactcgcgcaggacgagaaacaagtcgccaagaaacagacggaggccgatacgcaccgg
gaacgaatcgacgcgattgccaaggaaattgccgactaccgcacacagctgaccgcgttg
gaacgcgactacgacgaaatcaaggccaacgccgctcccgtccaactcacgcccgagcaa
gaaacacgttacgaagcgctccgctaccaggctgctgccgccagtgccgcaccaagacac
gcgctccatgccgcccaacgacgcctggagcaggcacgtgctcacgttgctacactccaa
cacacgctccaagaagcccaagcggcccaggcggaaaccgcacgcgacgtacaggcactc
gacacccgacgcgagaaacttaccaagagtctcgcaaatactactcaggatctgcaggca
acggaacatgaactggtgcaagtccaaggacaggcgcagcgggtccaagttcgtcgccag
gaattggatgttgacatagaaaagctcgatgcgtccttacgggaggccaagtacgacagt
acccgtagtaaggacgaggaatgtttggtgcgggccatcgcctcactccaacagcacttt
accggggttcacggtcgactcgtcgatttgtgtcgccccgtctcccgcaaattcaatctc
gctgttaccgtcgcggccgggaaagacatggacgccattgttgtggataccaagcagacg
gcctttgagtgcatcaagtacttgcgcgaacagcgcgtcggtacggccacctttctgccc
ttggatagtctacaaacgccgtcacccgatagtacggaacgattgcgggcgcacgtggcc
aaggacggccgatacagcctggtagccgacgtaattgcttgtgacgacgcggtccaccga
gccgtgcaatacgccgtggggaatacggtcgtggccgaagatctggatgcggcccgggaa
ctgtgctttggatcgtcctcgtcgcggcgaggcggtcggtccgagggaaactcaccccaa
tctcgcgtcaaggcggtcaccttgggaggggccgtcattagcaaagcgggtaccatgacg
ggtggagtcacacgagacgaggactccaaatcgggacgctgggatgcgcagaatctccat
aaaattcaggagcagaaagctcagttggaagcggaacgggaggccttggataccggcggt
gcctccaacagacgcagcggagttggggctggtgggtctttgggacacgcgagcaagatc
gaagagctccggaacaaggttggtaatctccgcaacaaagaccagtattcaaaaagcgat
ctggagtttaccaaaaagcaactggaggaaaagacggtgttgctaaagtcgaccgaaaag
cagctcgccaagttggaaaaacaagtggcggcgggcgaaaaggaattttccaaggccaat
actgcggtccagaagggaattgccgcagtcaaggcggcggaggatgagcttcttggagat
ttccgtgacgagactggtctgcgagatttgaacgcttacgaagaggcgatcggaaaaagc
cgggatgaattcaacgagaggaaacgcacgtttatggagcacattgcgcagctggagcaa
caaacaaaatacgagtcggggcgtgatctccaacagcccattgtacgtatcgaaaagcgg
atcaaggaacgtaaggctgctcttgccaaagcgaagaagaaggaatctgaactgcgcaag
aaggtcgatgaggccaaagcgaatctggccgaagcggaaatcaaggtggaggaagcgatc
gacaacgagaagaaattcgaggagcaagtgcaggatgctcaaagtgccttgacggaggcc
cagaatgagcggattcgtattgacaaagccattggatcggaagagacagcgctcgaacgc
cttcgtgcaaagttgcatgataccttgcaaaaagcgcatgtagaggaagtcttgctgccg
cgagttggagatgacaacgcatctcaggcttcgagcgtagatttctcccgaatgcccagt
cctctgaagcagcgcatgagtgaccgcgatgaaaagcgaatgcgcaaggagttcgaggac
aagctggccaaaatagctgccaacattgagagtatcactccaaatatgaaggccagcgaa
gcgttctctaccataaccgatcgcctcaaaggaagtagctcggactacgaaaagtccaaa
gagaagtctgcgaaagcggctcaggcctttcaacgagtcaaggcaaagcgcgctaaacta
tttaacgaggctttcaaccatattgatgaggctttgaagacaatctacaccgacatgacc
aagagtagcaagcatcctttaggtgggaatgcctatcttagcctcgacgatgccgaagag
ccgtataaaggtggaatcaagttcaatgcgatgccaccgatgaagcgatttcgtgacatg
gaacagctaagtggcggcgagaagacggtagccgctctgtcactattgtttgccattcat
tcgttccacccggcgccgttttttatcatggacgaaattgatgcagcgttggacaacgtc
aaccttcgcaaggtttgcaactatatcaagcaacgcagccagacagattttcagtgcatc
gtaatcagtctcaaagacatgttctacgagcacagccaaggattagtaggtatctaccgc
gatgtcggtacgaactcgagccatactcttactttagacttgacgaaattt

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (123)   
   KEGG ORTHOLOGY (1)   
   RefGene (118)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (134)   

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