KEGG   Parageobacillus thermoglucosidasius DSM 2542: AOT13_03655
Entry
AOT13_03655       CDS       T04476                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
ptl  Parageobacillus thermoglucosidasius DSM 2542
Pathway
ptl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ptl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AOT13_03655
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ptl03021]
    AOT13_03655
   03019 Messenger RNA biogenesis [BR:ptl03019]
    AOT13_03655
Transcription machinery [BR:ptl03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     AOT13_03655
Messenger RNA biogenesis [BR:ptl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     AOT13_03655
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB ATPase_2 AAA_22 AAA AAA_25 Spore_III_AA NACHT DUF6417
Other DBs
NCBI-ProteinID: ALF09193
Position
736637..737911
AA seq 424 aa
MELTLSTLENMKLKELYELARQYKISYYSKLTKKELIFAILKARAEQDGLLFMEGVLEII
QSEGFGFLRPINYSPSSEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYFGLLHVEAV
NGEDPEIAKERVHFPALTPLYPNRQMKLETTPDKLSTRIIDLIAPVGFGQRGLIVAPPKA
GKTMLLKEIANSITTNHPEVELIVLLIDERPEEVTDIERSVKGDVVSSTFDEVPENHIKV
AELVLERAMRLVEHKRDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFG
AARNIEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLDRSLAERRIFPAIDIRR
SGTRKEELLIPKEHLEKLWAIRKTMSDSPDFIERFLSKLRQTTSNEEFFAMLDEEWKNNG
IVRI
NT seq 1275 nt   +upstreamnt  +downstreamnt
atggagttaacactgtctacattagaaaatatgaaactgaaagagctatatgagctcgct
cgccaatataaaatttcctattacagtaaactcacaaagaaagagcttatttttgccatt
ttgaaagcgcgtgcggagcaagacggactgctgtttatggagggtgtgctcgaaatcatt
caatctgaaggattcggttttttacgaccgatcaactactctccaagttcggaagatatt
tatatttccgcatcgcaaattcgccgtttcgatttgcggaacggggacaaagtgtctgga
aaagtgcgccctccaaaagaaaacgagcgctatttcggattgcttcatgtcgaagcagtc
aatggtgaagatccggaaatcgcgaaggaacgggtgcactttccagcgttaacgccatta
tacccaaatcggcaaatgaaactggaaaccactccggacaagctgtcaacgagaatcatc
gacttgattgccccggttggcttcgggcagcgcggactgattgtcgcccctccaaaagct
gggaaaacgatgctattaaaagaaatcgccaacagcatcaccacaaaccatcctgaagtg
gaactcattgttctcctcattgacgaacgtccagaggaagtcacggatatcgagcggtca
gtaaagggggatgtcgtcagttcgacgtttgacgaagtgccggaaaatcatattaaagtt
gcggaactagtgcttgaaagagcgatgcgtcttgtcgaacataagcgggatgttgtcatt
ctgatggacagcatcactcgtttagcccgcgcttataacttggtcatcccgccgagcggc
cgtacgctttcaggggggattgatccggctgcgttccatcgtccgaaacggtttttcggg
gcggcgcgcaacattgaagaaggcggcagccttacgattttagctacggcccttgttgat
accggttcgcgtatggatgacgtgatatatgaagagtttaaaggcaccggaaatatggag
ctccaccttgaccgttcgctggcagagcggcgcattttcccggcgatcgatatccgccgt
tcaggcacgcgcaaagaggaactgctcattccgaaagagcatcttgaaaaattatgggcg
attcggaaaacgatgtctgattcccctgattttattgaacgatttttaagcaagcttcgc
cagacaacatcaaacgaagaatttttcgccatgttggatgaggaatggaaaaataacgga
atcgtgcggatttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (19)   

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