KEGG   Planktomarina temperata: RCA23_c23980
Entry
RCA23_c23980      CDS       T03229                                 
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase alpha subunit RpoA
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
ptp  Planktomarina temperata
Pathway
ptp03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ptp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    RCA23_c23980 (rpoA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ptp03021]
    RCA23_c23980 (rpoA)
   03400 DNA repair and recombination proteins [BR:ptp03400]
    RCA23_c23980 (rpoA)
Enzymes [BR:ptp01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     RCA23_c23980 (rpoA)
Transcription machinery [BR:ptp03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     RCA23_c23980 (rpoA)
DNA repair and recombination proteins [BR:ptp03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      RCA23_c23980 (rpoA)
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_L RNA_pol_A_CTD RNA_pol_L_2
Other DBs
NCBI-ProteinID: AII87920
Position
complement(2542336..2543490)
AA seq 384 aa
MPPTKAPPRISILTEGRADFRVPFGRFFPRASLVLGHGAKTRMEDRMIHKNWAELIKPMQ
LEVKPGNDPSRQATLIAEPLERGFGLTLGNALRRVLMSSLQGAAIASVQIDNVLHEFSSV
AGVREDVTDIVLNLKGVAIRMEVEGTKRLTVQAKGPGVVTAGNIVESAGIEVLNKEHILC
HLDEGADLFMELTVNTGKGYVAADKNRPEDAPIGLIPIDAIYSPVKKVSYDVQPTREGQV
LDYDKLTLKVETDGSLTPDDALAYAARILQDQLSIFVNFDEPESANAASEDDGLEFNPLL
LKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSLNEIKEVLSGMGLH
LGMDVEDWPPDNIEDLAKKLEDNF
NT seq 1155 nt   +upstreamnt  +downstreamnt
ttgccgcccaccaaagcgccgccgcgtataagtattttgaccgaagggcgcgcggatttt
cgcgtgccctttggacgttttttccctcgagcgtctttggttttgggacatggagcaaag
acaagaatggaggaccgcatgatccacaagaattgggccgaattgattaagccaatgcag
cttgaagtgaagccgggcaatgatccgagccgtcaagcgacattgatcgccgaacccctt
gagcggggctttggtcttacattgggcaacgccttgcgccgcgttctgatgtcgtctttg
cagggcgctgcaattgccagcgtgcaaattgacaacgtattgcatgaattttccagcgtt
gccggtgttcgtgaagatgtcacggacattgtcttgaacctcaaaggtgttgcgatccgc
atggaagtggaaggcactaagcgtttgactgttcaagccaaaggccctggtgtcgtaacg
gctggcaacatcgttgagtctgctggcattgaagttttgaacaaagagcatatcctgtgt
cacctcgacgaaggtgcggatctgttcatggaactgactgtgaacacgggcaaaggttac
gtggccgcggataaaaaccgtcccgaagatgcgccgatcggtttgattccaatcgatgcg
atctattcacctgtgaaaaaagtgagctatgatgttcaaccgacccgtgaaggtcaggtt
ttggattacgacaagctgactttgaaagtggaaactgacggctctttgacgccagatgac
gctttggcctatgctgcacggattttgcaagatcagctgtcgatctttgtgaatttcgac
gaaccagaaagcgccaatgcggcatcggaagatgacggtttggaattcaacccgctgctt
ttgaagaaagtggacgagttggagctttctgtacgctctgcaaactgcctgaaaaacgac
aatatcgtttatattggcgatttgatccaaaaaaccgaagcagaaatgctgcgcacgcca
aactttggccggaaatctttgaacgagatcaaagaggttctgtctggtatggggctgcat
ctcggcatggatgtcgaggattggccacccgataatatcgaagatctggccaagaagctc
gaagataacttctaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (45)   
   KEGG ORTHOLOGY (1)   
   RefGene (42)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (56)   

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