KEGG   Pan troglodytes (chimpanzee): 493952
Entry
493952            CDS       T01005                                 
Symbol
VIM
Name
(RefSeq) vimentin
  KO
K07606  vimentin
Organism
ptr  Pan troglodytes (chimpanzee)
Pathway
ptr04820  Cytoskeleton in muscle cells
ptr05169  Epstein-Barr virus infection
ptr05206  MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:ptr00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    493952 (VIM)
 09160 Human Diseases
  09161 Cancer: overview
   05206 MicroRNAs in cancer
    493952 (VIM)
  09172 Infectious disease: viral
   05169 Epstein-Barr virus infection
    493952 (VIM)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptr03019]
    493952 (VIM)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:ptr04812]
    493952 (VIM)
   04147 Exosome [BR:ptr04147]
    493952 (VIM)
Messenger RNA biogenesis [BR:ptr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Factors involved in mRNA localization
    Factors that have mRNA localization signals
     493952 (VIM)
Cytoskeleton proteins [BR:ptr04812]
 Eukaryotic cytoskeleton proteins
  Intermediate filaments
   Intermediate filaments
    Type III
     493952 (VIM)
Exosome [BR:ptr04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   493952 (VIM)
  Exosomal proteins of other cancer cells
   493952 (VIM)
SSDB
Motif
Pfam: Filament Filament_head DUF1664 DUF573 TolA_bind_tri RBD-FIP CENP-F_leu_zip Laminin_II
Other DBs
NCBI-GeneID: 493952
NCBI-ProteinID: NP_001009148
Ensembl: ENSPTRG00000002328
VGNC: 5877
UniProt: Q5R1W8
Position
10:17702162..17710488
AA seq 466 aa
MSIRSVSSSSYRRMFGGPGTASRPSSSRSYVTTSTRTYSLGSALRPSTSRSLYASSPGGV
YATRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDK
VRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAE
DIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEE
EIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSE
AANRNNDALRQAKQESTEYRRQVQSPTCEVDALKGTNESLERQMREMEENFAVEAANYQD
TIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSS
LNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE
NT seq 1401 nt   +upstreamnt  +downstreamnt
atgtccatcaggtccgtgtcctcgtcctcctaccgcaggatgttcggcggcccgggcacc
gcgagccggccgagctccagccggagctacgtgactacgtccacccgcacctacagcctg
ggcagcgcgctgcgccccagcaccagccgcagcctctatgcctcgtccccgggcggcgtg
tatgccacgcgctcctctgccgtgcgcctgcggagcagcgtgcccggggtgcggctcctg
caggactcggtggacttctcgctggccgacgccatcaacaccgagttcaagaacacccgc
accaacgagaaggtggagctgcaggagctgaatgaccgcttcgccaactacatcgacaag
gtgcgcttcctggagcagcagaataagatcctgctggccgagctcgagcagctcaagggc
cagggcaagtcgcgcctgggggacctctacgaggaggagatgcgggagctgcgccggcag
gtggaccagctaaccaacgacaaagcccgcgtcgaggtggagcgcgacaacctggccgag
gacatcatgcgcctccgggagaaattgcaggaggagatgcttcagagagaggaagccgaa
aacaccctgcagtctttcagacaggatgttgacaatgcgtctctggcacgtcttgacctt
gaacgcaaagtggaatctttgcaagaagagattgcctttttgaagaaactccacgaagag
gaaatccaggagctgcaggctcagattcaggaacagcatgtccaaatcgatgtggatgtt
tccaagcctgacctcacggctgccctgcgtgatgtacgtcagcaatatgaaagtgtggct
gccaagaacctgcaggaggcagaagaatggtacaaatccaagtttgctgacctctctgag
gctgccaaccggaacaatgacgccctgcgccaggcaaagcaggagtccactgagtaccgg
agacaggtgcagtcccccacctgtgaagtggatgcccttaaaggaactaatgagtccctg
gaacgccagatgcgtgaaatggaagagaactttgccgttgaagctgctaactaccaagac
actattggccgcctgcaggatgagattcagaatatgaaggaggaaatggctcgtcacctt
cgtgaatatcaagacctgctcaatgttaagatggcccttgacattgagattgccacctac
aggaagctgctggaaggcgaggagagcaggatttctctgcctcttccaaacttttcctcc
ctgaacctgagggaaactaatctggattcactccctctggttgatacccactcaaaaagg
acacttctgattaagacggttgaaactagagatggacaggttatcaacgaaacttctcag
catcacgatgaccttgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   VGNC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (9)   
   RefSeq(nuc) (1)   
   GenBank (4)   
   EMBL (4)   
Protein domain (8)   
   Pfam (8)   
All databases (34)   

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