KEGG   Pseudoalteromonas tunicata: PTUN_a0125
Entry
PTUN_a0125        CDS       T05187                                 
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
  KO
K03732  ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
Organism
ptu  Pseudoalteromonas tunicata
Pathway
ptu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ptu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PTUN_a0125 (rhlB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptu03019]
    PTUN_a0125 (rhlB)
Enzymes [BR:ptu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     PTUN_a0125 (rhlB)
Messenger RNA biogenesis [BR:ptu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     PTUN_a0125 (rhlB)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII ERCC3_RAD25_C CMS1 AAA_22 AAA_19
Other DBs
NCBI-ProteinID: ATC92963
Position
I:128622..129890
AA seq 422 aa
MNNTHLSEKKFADFNIAPEVIAGLNAHGFEFCTPIQAQCLPYAIEKRDIAGQAQTGTGKT
LAFLTATCHHLLQSSKGQGKHPRALIMAPTRELAVQIHKDAKILAPHCNLNLGLVYGGEE
YEKQLAQLEKGVDILIGTTGRLIDLYKQGAYSLNEIEVVVLDEADRMFDLGFIKDIRYLF
RRMPDATQRLNLLFSATLSYRVQELAFEHMTNPIHVQVEPSQKTGKRIVEELFHPAQVDK
IPLLLTIIEEEWPEKAIVFSNTKHMCETVYAWLKAADHRVGLLTGDVNQKKRISILEQFT
AGNLDFLVATDVAARGLHIPEVSHVFNFDLPDDCEDYVHRIGRTGRAGASGKAISFACEQ
YAYNLQPIEEYVEHVIPLSHYDKTALLDDIPAPRIQKRRSPQGSQNSRSGGNRSNNARPR
AR
NT seq 1269 nt   +upstreamnt  +downstreamnt
atgaataatacacatctatcagaaaaaaagtttgcggactttaatattgcaccagaagtt
atcgctggtctgaatgctcatggctttgaattttgtactccaattcaagctcaatgctta
ccctatgcaattgaaaaacgtgatattgcgggtcaagcgcaaacaggcaccggtaagaca
ctcgcatttttaactgcgacttgtcaccacctattgcaaagtagtaaaggccaaggcaaa
cacccaagagccctgatcatggctcccactcgggagttagctgttcagatccacaaagat
gctaaaatattagcgccgcactgtaatcttaacttaggtttagtatatggtggcgaagaa
tatgaaaaacaactagcgcaacttgaaaaaggtgtagatattttaattggcacgactggt
cggctaattgacttgtataaacaaggtgcttacagcttaaacgaaattgaagttgtggtc
ttagatgaagcagatcgcatgttcgatttaggctttattaaagatatccgttatttattt
agacgtatgcctgatgcgacacaaaggttaaatttattattttcagctacgttatcttac
cgagttcaagaattggcttttgagcacatgactaatcctattcatgtccaagttgagcca
agtcaaaaaactggtaaacgaattgtcgaagagttattccatccagctcaagtagataaa
attccgcttttattgaccattattgaagaagaatggccagaaaaagcaatcgtattttca
aacactaaacatatgtgtgaaaccgtttatgcttggttaaaagcggccgatcatcgtgta
ggattgttaactggtgatgtaaatcagaaaaaacgtatttcaattttagaacaattcaca
gctggaaatttagactttttagttgcaaccgatgttgctgcacgaggccttcatatccca
gaagtgagccatgtatttaattttgatttaccagatgattgtgaagattatgtgcatcgc
attggtcgtacaggtcgtgctggcgcatcaggtaaagcaattagctttgcgtgtgagcag
tatgcttataatttacaaccaatagaagaatatgtagaacatgtcattcctttatctcat
tatgataaaactgcattgttagatgatattccggcaccacggatccaaaaaagacgtagt
ccacaaggctcgcaaaattcacgttcaggtggaaatcgctccaataacgctcgtccaaga
gcgcgatag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

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