KEGG   Pandoraea thiooxydans: ABW99_08380
Entry
ABW99_08380       CDS       T03947                                 
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ptx  Pandoraea thiooxydans
Pathway
ptx03030  DNA replication
ptx03410  Base excision repair
ptx03420  Nucleotide excision repair
ptx03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ptx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    ABW99_08380 (ligA)
   03410 Base excision repair
    ABW99_08380 (ligA)
   03420 Nucleotide excision repair
    ABW99_08380 (ligA)
   03430 Mismatch repair
    ABW99_08380 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ptx03032]
    ABW99_08380 (ligA)
   03400 DNA repair and recombination proteins [BR:ptx03400]
    ABW99_08380 (ligA)
Enzymes [BR:ptx01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     ABW99_08380 (ligA)
DNA replication proteins [BR:ptx03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     ABW99_08380 (ligA)
DNA repair and recombination proteins [BR:ptx03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     ABW99_08380 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     ABW99_08380 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     ABW99_08380 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      ABW99_08380 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH BRCT_2
Other DBs
NCBI-ProteinID: AKJ70469
UniProt: A0A0G3EWU1
Position
complement(2619383..2621473)
AA seq 696 aa
MSDSLTKSGTAVARAGITSPAEQAARLRAELEQHNYAYYVLDAPTVPDAEYDRLYAALVQ
IETEHPELVTPDSPTQRVGGQPATGFATVTHKVPMLSLNNGFADEDVVAFDRRVSEALYE
RDGDANDLFGQAVEYACELKFDGLAVALRYEDGLLVKAATRGDGTTGEDVTANIKTVRSI
PLRLRTRTPPAVLEARGEVLMFRRDFEKMNERQREAGEKEFANPRNAAAGSLRQLDSRVT
ARRPLSFFSYGIGELLGADMPPTHDALLRWYLELGLPVCDRRAVVHGAGGLLAFYREVGQ
ARASLPYDIDGVVYKVNRLDEQQRLGFVSRAPRFALAHKFPAQEALTTLLDIEVQVGRTG
AITPVARLAPVFVGGVTVTNATLHNEDEVRRKDLLIGDTVIVRRAGDVIPEVVGAVLERR
PADARAFVMPSACPVCGSAIERLPDEAIARCTGGLICAAQRKQALWHFAQRRALDIDGLG
EKLIDQLVDQHLIRTPADLFKLGLAKLAALDRMADKSASNLLAALEQAKHTTLARFIYAL
GIRHVGEATAKDLARHFGMLDRLMAASEAELLEVNDVGPVVAQSIANFFAEPHNVEVIEQ
LRAAGVSWAESEPQRAAAVSPLAGKTFVLTGTLPTLSREQAKERLEAAGAKVAGSVSKKT
DYVVAGAEAGSKLAKAEELGVPVLDEDGMLALLDAN
NT seq 2091 nt   +upstreamnt  +downstreamnt
atgtccgactctcttactaaatccggcacggcagtcgcacgtgccggcatcacttctccg
gccgaacaggctgcgcggctgcgcgccgagctggaacagcataactacgcctattacgtg
ctcgacgctccgacggtgcccgatgccgagtacgaccgcctttacgcggccctggtgcag
atcgaaaccgagcatcccgagctggtcactcccgattctccgacgcagcgcgttggagga
cagcccgccacgggttttgcgaccgtcacgcataaagtcccgatgctgtcgctcaacaac
gggtttgccgacgaggatgtcgtcgcattcgaccggcgagtcagcgaggcgctgtatgag
cgcgacggcgatgcaaatgacctctttggacaagccgtcgaatatgcctgcgagttgaaa
ttcgacggcctggcagtcgcgctgcgctatgaggacggactgctggtgaaggccgccacg
cgaggcgacggcacgaccggcgaggatgtgacggccaacatcaagaccgtgcgctcgatc
ccgctgcgcctgaggacgcggaccccgccggcggtgttggaagcgcgtggcgaagtgttg
atgttccgccgtgacttcgaaaagatgaacgagcgccagcgcgaggcgggcgaaaaggag
tttgccaatccgcgcaatgccgcggctggcagcttgcgtcagctcgattcgcgtgtgacg
gcacgacgtcccctgtcgtttttttcttacggtattggcgaattgctgggcgcggatatg
ccgccgacccacgacgcgttgttgcgctggtatctcgagctcggcctgccggtatgcgac
aggcgtgccgtggtgcacggcgcgggtggcctgctcgcgttctatcgggaggtcggccag
gcccgggcgtctttgccgtatgacatcgacggcgtcgtttataaggtcaaccggctcgat
gagcagcagcgcctgggcttcgtgtcgcgcgcgccgcgctttgcgctggcgcataaattc
cccgcgcaggaagcgctgacgaccttgctcgatatcgaggttcaggtcggccggaccggc
gccatcacgccggtggcgcgcctggcgccggtgttcgtcgggggcgtgacggtaaccaac
gcgacgctgcacaacgaggacgaagtccgccgcaaggatctcctgattggcgacaccgtc
atcgtgcggcgcgctggcgacgtgatcccggaggtggtgggcgcggtgctggagcggcgc
ccggccgatgcgcgcgcgtttgtcatgccgagcgcctgcccggtgtgcggatcggccatc
gagcggctgccggacgaggcgatcgcgcgctgcaccggtggactgatttgtgccgcgcag
cgcaagcaggcgctatggcactttgcccagcgccgggcgctggacatcgacggactgggc
gagaaattgatcgaccaattggtcgatcagcacctgattcgcacgccggccgatctcttc
aagctgggcttggcgaagctggcggccctggatcggatggccgataaatcggccagcaat
ttgctggcggcgctcgagcaggccaagcatacgacgctggcgcgcttcatctatgcgctg
ggcattcgccatgtgggcgaggcaaccgccaaagacctggcccgtcacttcggcatgctg
gatcggctgatggcggcaagcgaagccgagttgctggaggtcaatgatgtcggcccggtg
gtagcgcagtccatcgccaattttttcgccgagccgcataatgtcgaggtgatcgaacaa
ctgcgcgcggccggcgtcagttgggcggagagcgaaccacagcgcgccgcggcggtcagt
ccattggccggcaagacatttgtcctgacggggacgttaccgacgctgtcccgcgagcaa
gccaaggagcggctcgaggccgccggcgccaaggtcgccgggtcggtgtcgaaaaagacc
gactacgtcgtggcgggtgccgaagccggcagcaagctggccaaggccgaggaattgggc
gtgccggtgctcgacgaagacggcatgcttgcgttgctggatgcgaactga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (29)   

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