KEGG   Phaseolus vulgaris (common bean): PHAVU_002G324500g
Entry
PHAVU_002G324500g CDS       T03093                                 
Name
(RefSeq) hypothetical protein
  KO
K12879  THO complex subunit 2
Organism
pvu  Phaseolus vulgaris (common bean)
Pathway
pvu03013  Nucleocytoplasmic transport
pvu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PHAVU_002G324500g
  09122 Translation
   03013 Nucleocytoplasmic transport
    PHAVU_002G324500g
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvu03019]
    PHAVU_002G324500g
   03041 Spliceosome [BR:pvu03041]
    PHAVU_002G324500g
Messenger RNA biogenesis [BR:pvu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     PHAVU_002G324500g
Spliceosome [BR:pvu03041]
 Complex C
  Other components
   EJC/TREX
    PHAVU_002G324500g
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    PHAVU_002G324500g
SSDB
Motif
Pfam: Tho2 THOC2_N Thoc2 LIM_bind
Other DBs
NCBI-GeneID: 18639811
NCBI-ProteinID: XP_007160466
UniProt: V7CT64
Position
2:complement(48297997..48322293)
AA seq 1864 aa
MSLPPIECLYVTEDCVREWRTANPALKVSQAVPMLRFLYELCWTMVRGELPFPKCKVALD
SVIFSEQASNDQIASNFADIVTQMAQDHTMPGDSRSRLIKLARWLVESEMVPVRLLQERC
EEEFLGEAELIKIKAQELKGKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCRDSEAP
TQKSSTATIGIIKSLIGHFDLDPNRVFDIVLECFELQPDDDVFIELIPIFPKSHASQILG
FKFQYYQRMEVGSSVPFGLYRLTALLVKQDFIDLDSIYAHLLPRDDEAFEHYNTFSSKRL
DEANKIGRINLAATGKDLMDDEKQGDVSIDLFAALDLETEATEERTTELQSSQTLGLLTG
FLSVDDWYHAHLLFERLSALNAVEHIQICDSLFRLIQKSISSAYDVVRLSHLQNPGSSSG
GADVMDVDNSSGCNSFIDLPKELFQMLSCTGPYLYRDTVLLQKVCRVLRGYYLSALELVS
RGNGALNPQLHVPGNPNLHLKEAKLRVEDALGACVLPSLQLIPANPAVGQEIWELMSLLP
YEVRYRLYGEWEKDEERIPMLLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHASPM
TVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLALGGRDKLKDDGLNLSD
WLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELIQQMANVQYTENLT
EEQLDAMAGSDTLRYQATSFGVTRNNKALIKSTSRLRDALLPKDEPKLAIPLLLLLAQHR
SLAVVNADAPYIKMVSEQFDRCHGTLLQYVEFLGSAITPSSNYGILIPSLNDLVHLYHLD
PEVAFLIYRPVMRLFKSQRNPDVCWPLDDKHAASDGSSNFESDPLGDSGSMVLNFGSAQN
PISWSYLLDTVKTMLPPKAWNSLSPDLYATFWGLTLYDLYVPKNRYESEIAKLHANLKSL
EELSDNSSSAITKRKKEKERIQESLDRLISELHKHEENVASVHSRLSREKDRWLSSCPDT
LKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMIC
CCTEYEAGRLGRFLYETLKIAYYWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQFIK
VHWKWSQRITRLLIQCLESSEYMEIRNALIMLTKISSVFPVTRKSGINLEKRVAKIKSDE
REDLKVLATGVAAALAARKPSWVTDEEFGMGYLELKPAPSGTKSSAGNPSTVHSGMNLNV
SQTESASGKHVDSGNTVKDQVIRTKTTDGKSERTESMTATKSDSGHTKVKTGAMVNGFDG
QTSSISSSIQSGMSKSMENSKQVEELINRASDDHGTRTAESRASAKRSVPTGSLSKPSKQ
DPLKEDSRSGKPVARTSGSLSSDKDLHSGTTNVTSSVSANGNTITGSTKGSNAPVRISLD
GPGNESKAEVGVSKSSDIRASVVKDDGNDTADLTRGSSSRVVHSPRHENTGVASKSNEKV
QKRASSAEEPDRLGKRRKGDVELRDFESEVRFSDRDKLMDPRFADDKLGPEEHGLYRAGD
KSLERPKDKGNERYERDHRERLDRVDKSRGDDSVAEKPRDRSIERYGRERSVERMQERGS
ERSFNRPPEKAKDERSKDDRNKLRYSDASVEKSHADDRFHGQSLPPPPPLPPNMVPQSVG
AGRRDEDADRRYGATRHSQRLSPRHEEKERRRSEETVVSQDDAKRRKEDDFRERKREEIK
VEEREREREKANVLKEDLDLNAASKRRKLKREHLSTGEPGEYSPVAPPPPPTGIGMPLGY
DGRDRGDRKGPVIQHPNYIDEPNIRIHGKEVASKLNRRDSDPLYDREWDDEKRQRADQKR
RHRK
NT seq 5595 nt   +upstreamnt  +downstreamnt
atgtctcttccacccatagagtgtctgtacgtaacagaggactgtgttcgcgaatggagg
actgccaaccctgccctcaaggtctcccaagctgtccccatgcttcgcttcctctacgag
ctctgttggactatggttaggggtgaactgccgtttcccaagtgtaaagttgcgttggat
tctgtcatattttcagaacaagcttccaatgaccaaatagcttcgaattttgctgatata
gtgacccagatggctcaagatcatacaatgcctggagattcccgttctcgtctcatcaag
ctggcaagatggcttgtggaatctgaaatggttccagttaggctacttcaagaacgttgt
gaggaagaattcttgggggaggctgaattgatcaaaattaaggctcaggagttgaagggt
aaagaggtcagagttaatacccgacttctctatcagcaaaccaaattcaaccttctcaga
gaagagagtgagggctatgcaaagctggtgactcttctttgccgggactccgaagcacct
acacaaaaatcatccacagcaaccattggcattattaagtcattaattggccattttgat
ttggatccaaatcgtgtttttgatattgtcctagagtgttttgaactgcagcctgatgat
gatgtgtttatagagttgattcctatatttccaaagtctcacgcgtcacagattcttggg
tttaaatttcaatattatcaacgcatggaagttggcagttctgttccatttgggctatat
agactcacagccttgctggtgaagcaagattttattgatcttgatagcatttacgctcat
ctacttcccagagatgatgaggcatttgagcattacaatactttctcttccaagcgactt
gatgaggctaataagattggaagaataaaccttgctgcaactggaaaagatctaatggat
gatgagaaacagggggatgtcagtatagatctctttgctgccttagaccttgaaacagaa
gcaactgaagagcgaacaactgagcttcaaagcagtcagactctgggcttgcttactggc
tttctttcggtggatgactggtatcatgcacacctattatttgaacgtctttcagcactc
aatgctgtggaacatattcaaatatgtgacagtttgtttaggcttattcagaagtccatt
tcttcagcatatgatgttgtccgtctgtcacatcttcaaaatcctggatcatcatcagga
ggcgctgatgttatggatgtcgataactcttcaggatgcaattctttcatagatcttcct
aaggaactttttcagatgctttcttgtactggaccttatctctaccgtgatactgtattg
ttgcagaaggtttgtagggtcttgagaggttattatctttctgctctagagcttgtaagt
cgtggcaatggtgccttgaatcctcaattacatgttcctggaaaccctaacctacatctt
aaggaggcaaagctaagggtagaggatgctttaggggcatgtgtattaccttctctgcag
ttaattcctgccaatccagctgttgggcaggaaatatgggaactaatgagtcttcttcct
tacgaggtgcgatatcgattgtatggtgaatgggaaaaagatgaagagcgcattcctatg
cttttagctgcaagacaaactgccaagttggacactagacgtattttgaaacggctggca
aaggaaaatttgaagcagctgggtcggatggttgcaaaattagctcatgccagccctatg
actgtcctccgaacaattgttcatcagattgaggcttacagagacatgattactcctgta
gtggatgcatttaagtacttgactcagctcgagtatgatatattggaatatgttgtgatt
gaacgattagcacttggtggacgtgataagttaaaggatgatggccttaatttgtcagat
tggcttcaatctctagcctcgttttggggccatctgtgtaagaagtacccatcaatggaa
ttacggggccttttccagtatcttgtgaatcagttaaaaaaggggcaaggaattgagctt
gttctactgcaggagcttattcaacaaatggcaaatgtccagtacacagagaacttgact
gaggaacagcttgatgcaatggcagggagtgacactctcagatatcaagcaacttctttt
ggtgtaactcggaataataaggcattgataaagtcaactagcagacttagggacgcatta
cttccaaaagatgaaccaaagttggcaatccccctcttacttcttcttgctcagcatcgt
tctctagctgttgtaaatgcagatgcaccctacattaagatggttagtgagcagttcgat
agatgtcatggaactctccttcaatacgtggaatttcttggcagtgcaatcacaccatca
tcaaattatggcatccttattccctcgctcaatgacctggtccacctttaccacctggac
cctgaggttgctttcttgatatatcgtcccgtaatgaggcttttcaagtctcagagaaat
cctgatgtttgctggcccttggatgataaacatgctgcaagtgatggatcttctaacttt
gaatctgatcctctgggtgattctggtagtatggttctaaattttggctctgctcaaaat
cctataagttggtcgtatcttcttgatactgttaaaaccatgttgcctccaaaagcatgg
aatagcttatctcccgatctttatgcaacattttggggtcttacattatatgatctgtat
gtcccaaaaaatcgatatgagtcagaaatagccaagctgcatgcaaatctaaaatctttg
gaggagctttctgataattcaagctcagcaattacaaagaggaagaaagaaaaggaaaga
attcaagaatctcttgatcgtctgattagtgaactgcataaacacgaggagaatgttgca
tctgttcatagtcgtctttctcgtgaaaaagacagatggttaagttcctgtcctgacacc
ttgaagatcaacatggagtttcttcagcgctgtatttttccacgctgtactttcagtatg
ccagatgctgtttattgtgctatgtttgtccacacacttcattcccttggaacccccttt
ttcaacacagtcaatcacatagatgttttgatttgtaaaaccctacaacctatgatatgc
tgctgcactgaatatgaggcaggcaggcttggtaggtttctgtatgagactttgaagatt
gcttactattggaagagtgatgaatctatttatgaacgtgagtgtggaaacatgccaggc
tttgccgtttactatagatatccaaatagccaacgagttacatacggccagttcattaag
gtacactggaagtggagtcagagaatcacacgtttactaattcagtgtctggaatctagc
gagtacatggaaattaggaatgctctcataatgttgacaaaaatttctagtgttttccct
gttacccggaagagtgggataaaccttgagaagcgagtagctaagattaaaagtgatgaa
agagaggatcttaaggtgttggcaactggtgttgcagcagcattggctgctaggaagcct
tcttgggttactgatgaagaatttggtatgggttatcttgagttgaaacctgcaccatct
gggactaaatcttcagctggaaatccctcaactgtacatagtgggatgaatctcaatgtt
tcacaaactgaatctgccagtggaaaacatgtggactctggaaacacagtcaaagatcag
gtaataagaacaaaaactaccgatggcaagtctgaaagaacggaaagcatgactgcgaca
aaatctgattctggccatacaaaagtcaagaccggtgcaatggtaaatggatttgatggc
caaacatcctcgatctcatcttctatacaatctgggatgtcaaaatctatggaaaactca
aagcaagtggaagaattgataaatagagcatcagatgatcatggaacaagaactgctgag
tcaagagcctcagcaaagcgttcagtgcctactggttcactttcaaaaccatcaaaacaa
gaccctttaaaagaagatagtaggtctggaaaacctgttgctagaacttcaggttccttg
agtagtgacaaggatctacacagtggaactaccaatgtaacttcttcagtcagtgctaat
ggtaacaccattactggttctactaaaggttcaaatgcaccagtaaggatttcattggat
ggtcctggtaatgagtcaaaggccgaggttggagtttccaagtcttctgatattagggca
tctgtggtgaaggatgatggaaatgatactgctgatttaactagaggatcctcttcacgc
gtagttcattcccccaggcatgaaaacacaggagttgcttcaaaatctaatgaaaaagtt
cagaagagagccagttctgctgaagaaccagacagactaggtaaacgacggaaaggagat
gttgagctaagagattttgaaagtgaagttcgattctctgatagagataagttgatggat
cctcgctttgctgatgacaaattgggaccagaggaacatggtctgtacagagcaggtgat
aagtcactggaacgtccaaaagacaagggcaatgaaagatatgagagggaccacagggaa
agattagaccgcgtagacaagtctcggggtgatgactctgtagctgaaaaacctagggat
aggtcaattgaaagatatggaagagaacgatccgttgagagaatgcaagagaggggtagt
gagaggagttttaatagaccacctgagaaagcaaaggatgaaagaagcaaggatgatagg
aacaaattacgttacagtgatgcatcagtagaaaaatctcatgctgatgatcgcttccat
ggtcaaagcttgcctccaccgccccctttacctcctaatatggttcctcaatccgtagga
gctggtaggcgtgatgaagatgctgataggaggtatggagcaacgaggcactctcaaaga
ctttctccaaggcatgaagaaaaggaacggagacgatcggaagagactgtggtttctcag
gatgatgccaaacgccgaaaagaagatgattttcgagaacgaaaacgtgaagagattaag
gttgaagagagggagagagaaagagagaaagcaaatgttctgaaggaagatttggattta
aatgccgcatccaagaggcggaaacttaagagggagcatctatcaactggtgaacctggg
gagtactcacctgtagctcctccacctcctcccactggtattggtatgccattggggtat
gatggaagggacaggggagacagaaagggacccgtcatccagcatccaaactacatagat
gaaccaaatatcaggattcacggtaaagaggtggccagcaagttgaatcgccgtgattca
gatcccttgtatgatcgtgaatgggatgatgagaagagacaaagagctgatcaaaagcga
aggcaccggaagtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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