KEGG   Phaseolus vulgaris (common bean): PHAVU_008G288600g
Entry
PHAVU_008G288600g CDS       T03093                                 
Name
(RefSeq) hypothetical protein
  KO
K12589  exosome complex component RRP42
Organism
pvu  Phaseolus vulgaris (common bean)
Pathway
pvu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pvu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PHAVU_008G288600g
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvu03019]
    PHAVU_008G288600g
Messenger RNA biogenesis [BR:pvu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     PHAVU_008G288600g
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     PHAVU_008G288600g
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 18624359
NCBI-ProteinID: XP_007142531
UniProt: V7BAA8
Position
8:59250800..59254295
AA seq 286 aa
MVGLSLGEKHFIQGGIAHDLRCDGRKRLAYRPILVETGVIPQANGSARVRIGATDVIASI
KAELGKPSLLQPDKGKASIYIDCSSTAEPAFEGRGGDELAAELSIALQDCLLGGKSGAGA
GIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALAAAIKAALCNTGIPRVQVAAGASND
EQPEVDVSDEEFLQFDTSGVPVIVTLTKIGRHYIVDATSEEESQMSSAVSISVNRQGHIC
GIAKRGGVGLDPSIILDMISVSKHVSEELINKLDSEIASAEAEEES
NT seq 861 nt   +upstreamnt  +downstreamnt
atggtgggtttatctcttggagaaaaacatttcatacaaggtggcattgctcatgatctt
cgatgtgatggtagaaagagattggcatatcgaccaatcctggttgaaactggagtgatt
ccccaggcaaatggttctgctcgagtcagaattggcgccacagatgtcattgccagtatt
aaggctgaacttggaaaaccaagcttgttgcaacctgacaaaggaaaggcctctatatat
attgattgcagttcgactgcagagccagcctttgagggtagagggggtgatgagttggca
gcagaactgtcaattgctcttcaagactgtctcttgggtggtaaaagtggagcaggtgct
ggcattgacctttcatcacttattgtcgttgaaggaaaaatttgttgggatctctacatt
gatgggcttgttgttagttcagatggaaatttgttggatgccctagctgctgccattaag
gctgctttgtgcaatacaggtattccaagagtccaagttgctgctggagcatcaaatgat
gagcaaccagaagttgatgtaagcgacgaagagtttctgcagtttgacacatctggagtc
cctgtcatagttacactaactaagattgggaggcactatattgtggatgcaacatcagaa
gaggaatcacaaatgagctctgctgtttccatctctgttaataggcaagggcacatctgt
ggcatagccaaacgaggaggtgtagggctggatccaagcatcattcttgatatgatatct
gtttctaagcatgtaagcgaggaattaataaacaaattggattcagaaattgcttctgct
gaagctgaagaggagtcatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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