KEGG   Pyrus x bretschneideri (Chinese white pear): 103962558
Entry
103962558         CDS       T03446                                 
Name
(RefSeq) DNA repair protein RAD50
  KO
K10866  DNA repair protein RAD50 [EC:3.6.-.-]
Organism
pxb  Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03440  Homologous recombination
pxb03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pxb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    103962558
   03450 Non-homologous end-joining
    103962558
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pxb03032]
    103962558
   03400 DNA repair and recombination proteins [BR:pxb03400]
    103962558
DNA replication proteins [BR:pxb03032]
 Eukaryotic type
  DNA Replication Termination Factors
   MRN complex
    103962558
DNA repair and recombination proteins [BR:pxb03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    MRN(MRX) complex
     103962558
    BRCA1-C complex
     103962558
   NHEJ (non-homologous end-joining)
    MRX complex
     103962558
SSDB
Motif
Pfam: AAA_23 AAA_21 SbcC_Walker_B SMC_N AAA_15 AAA_29 Rad50_zn_hook ABC_tran AAA_13 AAA_16 AAA_22
Other DBs
NCBI-GeneID: 103962558
NCBI-ProteinID: XP_009373549
Position
Unknown
AA seq 1315 aa
MSTVDKMLIKGIRSFDPENKHVITFFKPLTLIVGPNGAGKTTIIECLKLSCSGELPPNAR
SGHSFVHDPKVAGETETKAQIKLRFRTAAGKDVVCIRSFQLTQKASKMEFKAIDSVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQAQEIKTYKLQLENLQTKKDIAYKLREQISQAQEKANFLKS
EMQGLEGMIQDVNTKIQYTDTKLKDLKKLEDQISQKTAVRSTLVNEREEKHKALEEENED
TDEELKEWKTKFEEKIALLETKIRKLEREENDAESKITFLEKTLKESIREISKLENEAEV
HLCSKNERDSIIQKLFSRHNLGALPNPPFSNEVALNLTNRIKSRLLDLEKDLQNKKMSNE
KELETTWDCYNDVKDRWKSIEAQQEAKEEIKNGLLKRIEEKKNERDSLELEVSNVDLSHI
DEKEKNMHIELERKTNQYAKREFESTIRQKYNEMFSIEQMITVAKKEKVAMAVDTEDRTK
LSMKKNDLENRKRQHGKIINENRERVRGVLKGRFPPEKDLRGEISKVLSAVTMEFDDLST
KSREAENEVNMLQTRIQEINNNIYKHRKDMDSKRRYIESKLQALDQQSFTVDYYPTVLDS
AKEKRDVEKRKYNFADGMRQMFDPFERVARANHICPCCERPFSLQEEDEFVKKQRMNAAS
SAEKLKVLAAESSTADSFFQQLDRLRMVYEEYVNIGKERIPNAERELHDLTQEMEQKSHA
LDDVLAVSAQVKAEKDSIQALMEPIENADRLFQDIQREQKLVDELAHKLEQGHGARSMQD
IETELDNLLETKDNLHREVMQLRTEQTELQDDLSAVRNRWHNIREEKVKAANLLSDVKRA
EEELERLTEEKNRVDLDEKLLAESLRPLSKEKDKLLGYHNDLKVKLNREYDEQAERKREY
EQEVEALNMINLKIKEYNDSKKGEKLQEIQEKQHLLESQLQSCKTRKKEILAELNKSKDL
RGKQDQVRRNIEDNLSYRKTKAEVEELTHELESLEDKMLKIGRKPKVQAELEKLSHEREE
FLKRLNQNEGIISAHQSEISKHKIDLKNPDYKDIDKRYFDQLIQLKTTEMANKDLDRYYN
ALDKALMRFHSMKMEEINKIIRELWQQTYRGQDIDYICIHSDSDGAGTRSYSYKVLMQTG
DTELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNADSLAAALHR
IMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEAQEIFD
NT seq 3948 nt   +upstreamnt  +downstreamnt
atgagtacggtggacaagatgctaataaagggaatccggagcttcgacccggagaacaag
cacgtcatcaccttcttcaagcccttaaccctaatcgtcggccccaacggcgccggcaaa
accaccattatcgagtgcttgaagctctcctgctccggcgagttgcctcccaacgctcgc
tccggccacagcttcgtccatgaccctaaggtcgccggcgaaaccgagaccaaagcccag
attaagctccgcttcaggaccgctgccggcaaagatgtggtatgcattaggtcgtttcag
ctcacgcagaaggcctcgaaaatggagttcaaggccattgacagcgtccttcagaccatt
aatccccacactggagagaaagtttgccttagttatcgatgtgccgatatggatagggaa
atccctgctttaatgggtgtgtcaaaggctatcttagaaaatgttatatttgtgcaccaa
gatgaagccaattggcctttgcaggatccttcaacattgaagaagaagtttgatgatatc
ttctctgctacccgatatactaaggcattggaggtaattaaaaaacttcacaaggatcaa
gctcaagagataaagacctacaagctacagttggagaatcttcaaaccaaaaaagatatt
gcatataagcttcgcgagcaaatttctcaagctcaagaaaaagcaaattttttgaaaagt
gagatgcaggggttggagggaatgatccaagatgtgaatactaaaattcagtatactgac
acaaaactaaaggatttgaagaagctggaggaccagatatcacagaaaactgccgtgaga
agcaccctggttaacgagcgggaggagaagcacaaggctcttgaagaggagaatgaagac
actgatgaagaattgaaggaatggaaaaccaagtttgaagaaaagattgcgcttttggaa
actaaaatcaggaagttggaaagggaagagaatgacgcagagagcaaaattactttcctt
gaaaaaacgcttaaggaatctataagggagattagcaagctcgaaaacgaagctgaagtt
catttgtgctcaaagaatgagagagattctatcattcaaaagctcttttcaaggcacaat
ttgggtgctcttcctaatcctcccttcagcaatgaagttgctctgaacctcaccaatcga
ataaaatcaaggttgttggatctagaaaaggatttgcaaaataagaagatgtcaaatgaa
aaagaacttgagacaacatgggactgctacaatgatgtaaaagaccgttggaagtctatt
gaggctcagcaagaagccaaagaagaaataaagaatggccttctgaagcgcatagaggaa
aaaaagaatgagcgtgattctttagaacttgaagtttcaaatgttgatctttctcacatt
gatgaaaaagaaaaaaatatgcatattgagcttgagagaaagacaaaccagtatgctaaa
agggaatttgaatcaacaatacgccaaaagtataatgagatgtttagcatcgagcaaatg
attacagttgctaagaaagagaaagttgccatggctgttgatacagaggacagaacaaaa
ctgtctatgaagaagaatgatttggagaaccgcaaaaggcaacatggaaagattattaat
gaaaacagggagagagttagaggagtgctaaaagggaggtttcctccagagaaggatttg
agaggcgaaatcagtaaagtattgagtgctgttaccatggagtttgatgacttgagcacc
aaatctcgtgaagcggagaatgaggtgaatatgttgcagacaagaatacaagaaattaac
aataacatctacaagcatcggaaagatatggactcaaagaggagatatattgagtctaaa
cttcaggccttagatcagcaatcttttactgttgattactatcctacagtcttggattca
gccaaggagaaaagagatgtcgagaaaaggaaatacaattttgcggatggtatgcgacaa
atgtttgatccatttgaaagagttgcccgtgccaatcatatttgcccttgctgtgaacga
cctttttctctacaagaggaagacgaatttgttaaaaagcaaagaatgaatgctgcaagt
tctgctgagaaattaaaagtgctggctgcagagtcctcgactgctgactctttttttcag
caattggacaggcttcgcatggtttatgaagaatatgttaacattgggaaggaaagaatc
cccaatgcagagagagaactgcatgaccttactcaagagatggaacaaaagtctcatgcc
cttgatgatgtgttagcagtttcggctcaagtaaaggctgaaaaggactcgattcaggcc
ctgatggaacccattgaaaatgctgacagactatttcaagatatacaaagagaacagaag
ctagttgatgagctggcacataaacttgaacaaggccatggtgcgagatctatgcaagat
attgagacagagctggataatctgctagagacaaaggataatttgcatagagaagtaatg
cagttgagaaccgaacaaacggaattacaagatgatttgagcgcggtccgaaatcggtgg
cacaacataagggaagagaaagtcaaagcagctaatttattgtccgatgtcaaaagggca
gaagaagagttggagcgtttgacggaagaaaagaatcgagtcgatcttgatgaaaagctt
ttggcagagtctcttcgccctttatcgaaggagaaagataaattacttggctaccataat
gacttaaaagttaaacttaatcgcgaatatgatgagcaagctgaacgaaaaagagaatac
gagcaggaagttgaggcattaaatatgattaatttgaaaattaaagagtataatgattca
aagaaaggtgagaagttgcaggaaatccaagaaaagcaacatctgcttgaatctcaactt
caaagttgtaaaactagaaagaaggaaatcttagctgagttgaacaaaagcaaagattta
agagggaaacaagatcaggtaagacgaaatattgaggataatttgagttacaggaaaacg
aaagctgaagtagaggaacttacccatgagcttgagtcactggaagacaaaatgctgaag
attggtcggaagcccaaagttcaagctgaacttgaaaagctctctcatgagagggaggag
tttctgaaaaggttaaaccagaatgaggggatcatttctgctcaccagagcgaaatttca
aagcataaaattgatctcaaaaacccagattacaaggacattgacaagcggtactttgat
cagctaatccaactaaagacaactgagatggcaaacaaggacctcgacagatactacaat
gcgcttgataaagcattaatgcgcttccacagcatgaagatggaggaaataaataaaatt
ataagagagttgtggcagcaaacataccgaggacaagatatagactacatctgtatacac
tcagattctgatggtgctgggactcgttcttacagttacaaggttctcatgcagactggt
gatacagagcttgaaatgagaggaaggtgtagtgctggtcagaaggtccttgcctccctc
atcataagattggctttggctgaaactttctgcctcaactgcggaatactagcactagat
gaaccaactacaaacctggatggcccgaatgctgatagtctggccgctgctctccacaga
attatggaggaccggaagggccaggagaacttccagctgatagtaattactcacgatgag
cgtttcgctcaactaattggccagcgccagcatgcagaaaaatattatcgggtggcaaag
gatgatcaccagcatagcataatcgaagcccaggagatctttgattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (11)   
   Pfam (11)   
All databases (27)   

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