KEGG   Paenibacillus yonginensis: AWM70_18860
Entry
AWM70_18860       CDS       T04810                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
pyg  Paenibacillus yonginensis
Pathway
pyg03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pyg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    AWM70_18860
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pyg03400]
    AWM70_18860
Enzymes [BR:pyg01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     AWM70_18860
DNA repair and recombination proteins [BR:pyg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      AWM70_18860
SSDB
Motif
Pfam: DEAD TRCF Helicase_C UvrB_inter CarD_TRCF_RID ResIII RecG_dom3_C AAA_22 TniB DUF99
Other DBs
NCBI-ProteinID: ANS76379
UniProt: A0A1B1N4N6
Position
complement(4133357..4136887)
AA seq 1176 aa
MLQALIKAFSKDTDFGSLTAGIEAGMKEQLVSGLSGSSRQIMLSALHEQTQRPLLVVTHN
MFSAQKIADDLQEALSSDQVLLYPANELVAAESAISGPETLSQRIDVLLKASQGFRGIIV
VPYSGVRKLLPAPEALAEAGIRVELGGTLQLEAFLTKMIELGYERVERVETRGEMSVRGG
IIDFFPLMSPSGLAYRVELFDEDVDSIRVFDPADQRSVEQVKEIYITPCKELIAAGERLD
RAAEQVSQKLAAQLEKMTDRQAKGILQGEISREMEMLREHVYFTDIYKYVSLIYPEQNTL
FDYMPKDTLLILDEPARLLETAKQLERDEAEWNLHLFQNGKSLPELPLSVHSDKVLYHRP
FQTLFLSIFLRQVPHTQPQNILNFVTRGMQDFHGQMNVLKSEMERWKKSGAEIIMLASSA
ERKERMIRVLEDYSIPEPTILQGHLQTGFELPAAHLVVITEGEMFSQKQRKVRKGGRSMD
NAERIKSYTELKVGDYVVHQNHGIGKYMGIGTLEIGGIHKDYMHILYAGGDKLSVPIDQI
DLIQKYVGSEDKEPKVYKLGGNEWTRVKNKVRSSVEDIADDLIKLYAERQATEGYGFDKD
TPEQREFENMFPYEETRDQLRAIEEIKKDMEKKRPMDRLLCGDVGYGKTEVAIRAAFKAA
IEGKQVAVLVPTTILAQQHYETFRERFADYPFNIQVLSRFRTRKEQNETIKGVRAGTVDV
VIGTHRLLSQDLVFKDLGLLIVDEEQRFGVTHKEKLKKLKVNVDVLTLTATPIPRTLHMS
MLGVRDLSVIETPPENRFPVQTYVVEHSQALVRESIERELARGGQVYYLYNRVQGIQEMA
AQISALVPEARVGIGHGQMSEQELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVH
DADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKSLTEVAEKRLQSIKEFTELGSGFKIA
MRDLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEIQKRKVTLLGEEEPEDKKWNTTLD
LAIDAYLPPEYIYDSVQKIEIYKKTAAVATFDEVSELADELLDRFGEPPAAVSNLLAAAR
LKIYGRTYGIESMNRRGDDVTVKFYPQKVKEMNLSKLAEVGNQYGRRVQFTQGPDLEIHF
KAKGMDDKEMLELLEEFLGSLQPVFKSKGELQDVAK
NT seq 3531 nt   +upstreamnt  +downstreamnt
ttgttacaagcactcataaaagctttttctaaagataccgactttggatcgctgacggcc
ggcattgaagccggaatgaaggagcagctggtctcgggattgtctggctcgtccagacag
atcatgctgtctgcccttcatgaacaaacgcagcggccgctgctcgttgtgacccataat
atgttctctgcgcagaaaatcgcagatgatttacaggaagcgctatcatcggatcaggtg
ctgctttatccggccaacgagctggtcgcggctgaatcggctatttccgggcctgaaacg
ttgtcccagcgtatagacgtgctgctgaaagcctcccagggattccgcggcattattgtt
gtgccttattccggggtgcggaagctgcttcctgctccggaagcgctggcggaagccgga
atccgggtggagctaggaggtaccctgcagcttgaagcctttctgactaaaatgatcgaa
ctcggctacgaacgggtggaacgggtcgagacacgcggcgaaatgagcgtacggggcggg
atcatcgacttcttcccgctgatgtcgccatctggtcttgcttaccgggttgagctgttt
gatgaagatgtggattcaatccgggtatttgaccctgccgaccagcggtccgtggagcag
gtgaaggaaatatacattacgccgtgtaaggagctgattgcagccggggagcggcttgac
cgcgccgcagagcaggtcagccagaaactggcggcgcagctggagaaaatgaccgatcgc
caggcgaagggcatcctgcagggagaaatctcgcgggagatggagatgctgcgcgagcat
gtttattttacggatatttataaatatgtatccttgatctaccccgaacaaaatacttta
tttgattacatgccgaaggataccctgcttatcctggatgagccggccagactgctggag
acagccaaacagctggagcgcgatgaggcggagtggaatctgcatttgttccagaacgga
aaaagcctgccggagctgccgctatcggtccatagcgacaaggtgctgtaccaccgtccg
ttccagacgttattcctgtcgatcttcctgcgtcaggttccgcatacacagccgcagaat
attcttaatttcgtaacccgcggcatgcaggacttccacggtcagatgaacgtcctgaag
tccgaaatggaacgctggaagaagagcggcgctgaaattattatgctcgccagcagtgcc
gagcggaaggaacggatgatccgggtgctggaggattacagcattcccgagcctaccatt
ctgcagggccatttgcagaccggctttgagctgccggcggctcatctggtggtgattaca
gaaggggagatgttctcccagaagcagcgtaaagtccgcaagggcggccgcagcatggat
aatgccgagcgcatcaagagctataccgagcttaaggtcggcgattacgtggttcaccag
aaccatggcatcggtaaatatatgggtatcggcacgctggagatcggcggcatccacaag
gattacatgcatattctgtatgccggcggggataagctgtccgtgccgatcgaccaaatt
gacctgatccagaaatatgtcggttcagaggataaggagccgaaggtttataaactgggc
ggcaacgagtggacccgagttaaaaataaagtccgttcttctgtggaggacattgccgac
gatctgatcaagctgtatgccgagagacaggcgacggaaggttatggcttcgataaggat
acgccggaacagcgcgagtttgagaatatgttcccttatgaagagacacgagatcagctc
cgggccattgaggaaatcaagaaggacatggagaagaaacgtccgatggaccgcctgctg
tgcggcgatgtgggttacggcaaaaccgaagtggccatccgcgctgctttcaaagcggcg
attgaagggaaacaggttgccgttctggtgccgaccaccattctggcccaacagcattac
gagacgttccgcgagcgttttgccgactatccgttcaacattcaggtgctcagccggttc
cgcacacgcaaggagcagaacgagaccatcaaaggggttcgggctggaacggtcgatgtc
gtcatcggcacgcaccgcctcctgtcccaggatctggtctttaaggatcttggattgctg
atcgtcgatgaagagcagcgttttggcgtaacgcataaggagaagctgaagaagctcaaa
gtgaacgtggacgtgctgacccttacggccacgccgattccgcggactttgcacatgtcc
atgctgggcgtacgcgatttgtcggtcatcgaaacgccgccggagaaccggtttccggtt
cagacctatgtggtggagcacagtcaggcccttgtccgggaatcgattgaacgcgagctg
gcgaggggcggacaggtttattacctgtataatcgcgtacagggcattcaggagatggct
gcgcagatttcagctttggtgccggaggcgagagtcggcatcggccacgggcaaatgtcc
gagcaggagctggagaagaccatcctggacttcctggatggagaatatgatgtgctggtc
agcaccagcattattgaaaccggtgtagacattccgaatgtaaatacgctgatcgtacat
gacgcggataaaatgggcttgtcccagctgtaccagctgagaggtcgggtagggcgttcc
aaccggattgcctatgcttatttcacttatcagcgggacaaatcgctgactgaagtcgcg
gagaagcgcctgcagtccatcaaggaattcaccgagctgggttccggcttcaagatcgct
atgcgcgacttgtcgatccgcggtgcaggcaacctgctaggtgccgagcagcacgggttt
attgcgtccgtcggtttcgatctgtattcgcaaatgctggctgaagagattcagaaacgc
aaggtcacactgcttggcgaagaagagcccgaggacaagaagtggaacaccacgctggac
ctggcgatcgacgcttacctgccgcctgaatatatttatgacagtgtgcagaagatcgaa
atctacaagaagacagcggctgttgctacgtttgacgaagtgtccgagctggccgatgaa
ctgctggaccgctttggcgaaccgccggcagcggtcagcaatctcttggctgcagccaga
ctgaagatttatggccgaacctacggcattgagtcgatgaaccggcgcggcgatgacgta
acggtgaaattttatccgcaaaaggtcaaagagatgaatctttccaagctggccgaggtt
ggcaatcagtatggaagacgtgtacaatttactcaagggcctgatctggaaattcatttc
aaagccaaaggaatggacgacaaggagatgcttgagctgcttgaggagttcctgggctct
ttacaaccggtattcaaatcgaaaggggaactacaagatgttgcaaaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (20)   

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