KEGG   Riemerella anatipestifer RA-CH-1: B739_1256
Entry
B739_1256         CDS       T02331                                 
Name
(GenBank) hypothetical protein
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
rag  Riemerella anatipestifer RA-CH-1
Pathway
rag03030  DNA replication
rag03430  Mismatch repair
rag03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rag00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    B739_1256
   03430 Mismatch repair
    B739_1256
   03440 Homologous recombination
    B739_1256
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rag03032]
    B739_1256
   03400 DNA repair and recombination proteins [BR:rag03400]
    B739_1256
Enzymes [BR:rag01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     B739_1256
DNA replication proteins [BR:rag03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     B739_1256
DNA repair and recombination proteins [BR:rag03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     B739_1256
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 RNase_T tRNA_anti-codon DNApol_Exo
Other DBs
NCBI-ProteinID: AFR35854
UniProt: J9R234
Position
1348333..1352985
AA seq 1550 aa
MYLIFDTETTGLPKNFNAPLSDSDNWPRMVQIAWQLHDEEGNLVENQDYIIKPEGYDIPF
NATRIHGISTKMAHEQGRDLVEVLEEFREVLKKTKIVAGHNIEFDYNIVGAEFYRKSIEN
VLEKIPSADTMALGTDYCQLGGGRNGKYKPPKLEELYEKLYGEKFDEAHNAAADVNATAQ
VFFEMMRVGIIPAETLKISEEQLKVYQENHPSPIRPFAIVIRRQVEDFNKKKKRTDFGDI
SEIELGDYFNFHNHSIFSSLQSTTSIGDLIDKAKNNQFPAVGMVDLGNMMGAFKFVSDVE
KYNSGVKKAHQEYLVNKQKAEEEGADFNENAPESKELMAVLGCEFYISDRPEQKQFTKDD
PDRRTNVVLLAKNFNGYKNLAKLSSLGYVNGFYFGVPRVSREMVAQYKEDVIAVTSGIYG
DIPDAILNFGEQKGEERFKWWKETFGGDFYVQLQNHGLQEEEHLNEVLLDFADKYDVKIL
AQNETFYTDKSDANIQDIVSCIKDGEKLSTPVGKGFGKRKGLRSQEFYIKDAEELKQCFR
QYPDAFEAYTELLSKFEPYTLKRDVLLPKFDIPKEFQSEEDLKDGGKRGENAYLRYLTYE
GAKKRYDEITDDIRERLDFELEIIANTGYPGYFLIVQDFCNEARKMGVWVGPGRGSAAGS
AVAYCIGITNVDPIKYDLLFERFLNPERISMPDIDIDFDDEGRDRIIKWVIDKYGKSNVA
QIITYSVLGGKSAIKDAGRVLDVPIPETNNIAKLVPSVPGMNIAKALSKYDKLKDEDKVL
VDEMKAVLDNPNDQRFPVLDSAKKMEGCIRNTGIHACGVIITPEDISNLVPISIAAKDAD
ILVSQFDNSVAESAGLLKMDFLGLRTLTIIKDALKLVKERHGIDINPDEISLDDAKTYQL
FKEGRTIGIFQYESPGMQKYMRELKPTVFADLIAMNALYRPGPIKYIPNFINRKHGIEEI
IYDLPETEEYLKETYGITVYQEQVMLLSQKLANFTKGEADTLRKAMGKKQIDVLNKMYPK
FIEGGKKNNLDEEKLNKIWNDWKAFAEYAFNKSHSTCYALIAYQTAFLKANYPAEYMASV
MSNNINNTAQITMFMEDCRAMGVDVLGPDVNESQYKFSVNDKGQIRFGLGAIKGIGEGPS
EAISQERVKGKFKNIYDFFERVTPSQVNKRVVESLVMAGAFDEVDTYHRAQYFDIDNSGK
TNIEKLIRYGQSFQESKNEVENSLFADFAEEIQIEQPKIAPAMEWQNMHKLNKEKEIIGF
YLSAHPLDEYKYQFRFIQGELSKKEVLSQKDEILEELQSIPKESVLIEDTEDEPDLAVDL
DLVEGEDGEIMEEEVKNVEPKGSFNFLNLDEVEAFKDSIAGSINPNLFSEKEAWKELRKI
NDAAKEYTVAGLITEYTIRDGKNSGEKIAFLTLEDYSGSYGFRLGDRDYMRLREKLALQR
FVIVKIKMVISKDGRVFVNINEVIDLKDAFEKYAKSLSIVADITDIRRADIDFFQNDLLS
HQGEHKLSFYLKNPNDETELELPSIQKKINISAELLYKIQQYNKYQIFLN
NT seq 4653 nt   +upstreamnt  +downstreamnt
atgtatcttatttttgacacggaaactacgggattaccaaagaattttaatgctccatta
tcagattcggataactggccgagaatggtgcagattgcttggcagttgcacgatgaagag
ggtaatttagtagaaaatcaagactatatcatcaagccagagggttatgatattccgttc
aatgctactaggatacacgggatttctactaaaatggctcacgagcaggggcgagatttg
gtggaagttttagaagagtttagagaagtcctaaaaaaaacaaagatagtcgctggacac
aatattgagtttgattataatattgtgggggcggaattttatagaaagtccatagaaaat
gtgttagaaaaaattccgtcagccgatactatggcacttgggacagactactgtcagctt
ggaggaggtagaaacggaaagtataaaccgcccaaattggaggagctttacgaaaaactc
tatggtgaaaaatttgatgaagctcacaatgctgctgccgatgtaaatgccacggcacaa
gtcttttttgaaatgatgcgtgttgggattattcctgcggaaacgcttaaaatttcggaa
gagcagcttaaggtttatcaagaaaaccacccgagtcctattcgtccgtttgcgattgtt
atcaggaggcaagtagaggactttaataaaaagaaaaaaagaaccgattttggcgatatt
agtgagattgaactcggtgattatttcaattttcataatcatagtatcttttcatcttta
caatctaccacttccataggagatttaattgataaggctaaaaataatcagtttcctgct
gttggtatggtagatttaggcaatatgatgggggctttcaaattcgtttctgatgtagaa
aaatacaattctggcgttaaaaaagctcatcaagaatatttagtaaataaacaaaaagcg
gaagaagaaggtgcggatttcaatgaaaatgcaccagaatctaaagaacttatggcggta
ttgggttgcgaattctatatttctgaccgcccagagcaaaaacaatttaccaaagacgac
cctgacagaagaactaatgttgtacttctcgctaaaaactttaatggttataaaaattta
gcgaagttgtccagtttagggtatgttaatggtttttattttggtgtacctagggtgtct
agggagatggtggcacagtacaaagaagacgttattgcggtaacatcgggtatttatgga
gatattccagatgctattttgaattttggtgagcaaaaaggagaagaacgatttaagtgg
tggaaggaaactttcggtggggatttttatgttcagcttcaaaatcacggtttgcaagaa
gaggagcatttgaatgaggttttgttagattttgcagataaatacgatgtgaaaatttta
gcccaaaatgaaactttttatactgataaatctgatgctaatattcaagatattgtaagt
tgtatcaaagatggcgaaaagctatccacaccagtagggaaaggctttggcaagagaaaa
ggcttaaggtcgcaagagttttatatcaaagatgcagaggaacttaagcagtgctttaga
cagtatccagacgcttttgaggcttatacagaattgttgtcaaaatttgaaccttatact
ctaaagagagatgttttgttgcctaagtttgatattccaaaagagtttcaatctgaggaa
gatttgaaagacggtggcaaaaggggagagaatgcctatctgcgataccttacctatgaa
ggagctaagaagcgttatgatgaaattacagatgatataagagaaaggctagattttgag
ctggaaattattgctaatacaggctatccagggtatttcttgattgttcaagatttttgt
aacgaagctagaaagatgggggtatgggtaggtcctggtaggggttcggcggcaggttcg
gcggtggcttattgtattgggattaccaatgtagaccctataaaatacgacctccttttt
gagcgttttctaaatcctgaaagaatttcaatgcctgatattgatattgattttgatgat
gagggaagagatagaattattaaatgggttattgataaatacggtaaatctaatgtagca
cagattattacctactctgttttgggtggaaagtcggcgattaaagatgcgggtagggtg
ctagatgttcctattccagaaaccaataatattgcgaaacttgtaccttctgtaccagga
atgaacattgctaaggctttatctaaatacgacaaacttaaagatgaagataaagttttg
gttgatgaaatgaaggcggttttagacaatcctaacgaccagcgctttcctgtgttggat
tcggcgaaaaaaatggaaggttgcattagaaatacaggaatccacgcttgtggggtgatt
attacacctgaagatatttctaatttggtgcctatctcgatagcggctaaagatgccgat
attttggtctctcagtttgataactcggtggcagaaagtgcggggcttttaaaaatggac
tttttagggctgaggactttaactatcattaaagatgctcttaaactcgtgaaagaaagg
cacggtatagatattaacccagatgaaatttctttagatgatgctaagacttatcaactt
tttaaagagggaagaaccatagggattttccaatacgaaagccctggtatgcaaaaatat
atgagggaattaaagcctaccgtttttgcggatttaattgcgatgaatgctttgtatcgt
ccaggaccaattaagtatattcctaactttatcaatcgtaaacacggcattgaagaaatt
atttacgacctcccagagaccgaagaatatcttaaagaaacttatgggattaccgtttat
caggagcaggtaatgcttttgtctcaaaaattggcaaactttaccaaaggtgaagcggat
actttgaggaaggctatggggaaaaagcagatagatgttcttaataagatgtatcctaaa
tttatagaaggtggtaaaaagaataatctggacgaagaaaaactcaataaaatttggaac
gattggaaggcatttgcagaatatgcatttaacaaatctcactctacttgttatgcactt
attgcttatcaaacggcgtttttaaaggcaaattatccagctgagtatatggctagcgta
atgagtaataacattaacaacacggcgcaaatcacaatgtttatggaagattgtagagct
atgggcgtagatgttttaggaccagatgttaatgaaagtcagtataaattttcggtgaat
gataaagggcagataaggtttggtttaggagcgataaaggggattggcgaaggtcctagt
gaagcgattagccaagaaagagtgaaaggaaaatttaaaaatatctatgacttctttgaa
agagtaacaccatcacaagtgaataaaagagtggtggagagtttggtaatggcgggagcg
tttgatgaggtagatacctatcatagagcacaatattttgatattgataactcaggcaag
actaatatagagaagctcattagatacggacaaagtttccaagaaagtaaaaatgaggtg
gaaaactctctttttgcggattttgcagaagagatacaaatagaacagcctaaaatagca
cccgctatggagtggcagaatatgcataaacttaataaagagaaagaaattattgggttc
tacttatcagctcaccctttagatgagtataaatatcagtttcgctttatacaaggtgag
ttgagtaaaaaagaggttttatctcaaaaagatgaaatcttagaagaattgcaatctatc
ccaaaagaatcggttttaatagaagatacggaagatgaaccagatttggcggtagacttg
gatttggtagaaggtgaagatggtgaaataatggaggaggaagttaaaaatgtagagcct
aagggtagttttaattttttaaatttagatgaagtagaagcctttaaagatagtatagcg
ggtagtatcaatcctaatttattctccgagaaagaggcgtggaaagaactaagaaaaatt
aatgatgcggctaaagaatataccgtggcagggctaattacagaatataccataagagat
ggtaaaaatagtggagaaaaaattgcatttttaactctagaagattatagtgggtcgtat
ggttttcgtttgggagatagagattatatgcgtcttagagaaaagttagctttacaaaga
tttgtgattgttaagataaaaatggtaatttctaaggacggtagagtttttgtgaatata
aatgaagtgatagaccttaaagatgcctttgaaaaatatgcaaaatcactatctattgta
gcagatattactgatattagaagggcggatattgatttctttcaaaacgatttactctct
catcaaggagagcataagttaagtttctatcttaaaaatcctaacgatgaaacggagcta
gaattaccatcaatacagaagaaaatcaacataagtgcagaacttttgtataaaattcag
cagtataataagtatcagatatttcttaactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (20)   

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