KEGG   Rhodococcus aetherivorans: AAT18_07375
Entry
AAT18_07375       CDS       T03876                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
rav  Rhodococcus aetherivorans
Pathway
rav03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rav00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    AAT18_07375
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rav03400]
    AAT18_07375
Enzymes [BR:rav01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     AAT18_07375
DNA repair and recombination proteins [BR:rav03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      AAT18_07375
SSDB
Motif
Pfam: DEAD UvrB_inter TRCF Helicase_C CarD_TRCF_RID ResIII LSDAT_prok DUF3638 AAA_22 IstB_IS21 UB2H RecG_dom3_C
Other DBs
NCBI-ProteinID: AKE89086
UniProt: A0AA46SCH7
Position
1575010..1578642
AA seq 1210 aa
MSDVSVTPLSGLARIALADAQLERVAALAGTAEQALVAPPSARPFVAAALAAKTPLLVVT
ATGREADDLTAELHEMLGDVVAQFPSWETLPHERLSPSADTVGRRLQVLRRLAHPEDRDY
GPELRVIVATVRSLVQPMAPRLGDIEPVTLRVGAEHDFDELIERLVELAYTRADMVGKRG
EFAVRGGILDVFPPTADHPVRVEFWGDEVTELRPFSVADQRSIPELEVGTLIAPPCRELL
LTEQVKERAARLAQDNPADAALVEMLDKMASGIPVEGMEALLPVLQTGELQLLTDVVPAG
THVLLCDPEKVRTRAADLMRTGQEFLEASWTAASLGGAAPLDTANMKGVDLAASAYRPLT
QVRETAEAAGRPWWTLSPLASGADTEVVLDVQPAPEVRGSDELLTMLFANLRAHVTTGGR
AAIVVAGAGTGQRVLERLQENDVPAARLDPGAEPVRGTVGVLCGALHDGVVLPGDGADVP
GLVLVTESDLTGNRVTAAEGRRTPVKRRNQVDPLALTAGDMVVHDQHGIGRFVEMVERTV
GGARREYLVIEYAPSKRGQPGDRLFVPMESLDQLSRYVGGEMPALSKLGGSDWANTKRKA
RKAVREIAGELVQLYAARQAAPGHAFAPDTPWQKEMEDAFAFTETQDQLTVISEVKADME
KAVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQTFTERMASFP
VTVKGLSRFTDPAESKETIAALADGAVDIVVGTHRLLQTGVRWKDLGLVIVDEEQRFGVE
HKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPVLTYVGAYADKQ
VAAAIRRELLRDGQVFYVHNRVSSIDKAAKRIRDLVPEARVAVAHGQMNEDTLEKTVQGF
WERQYDVLVCTTIVETGLDISNANTLIVERADSLGLSQLHQLRGRVGRSRERGYAYFLYP
PEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVR
LVGEAVEAFRAAADGRPVATEEAAKEVRVDLPVDAHIPPDYVTSDRLRLEAYRKLAAAHD
DDAIAAVVEELVDRYGPLPEEVGRLVSVAKLRLLCREYALEEVAVSGTQLKISPMHLPDS
KQMRLKRLYPAAQYRATSGLVQLPLPRTGGVGSDRVRDVELLQYIADFLLALDGKAQGSV
DVRVPAVASV
NT seq 3633 nt   +upstreamnt  +downstreamnt
gtgtccgacgtgtccgtcacccccctgtccggattggcgcggatcgcgctggccgacgct
cagctcgaacgtgtggccgccctcgccgggaccgccgaacaggccctggtggccccgccg
tcggcccggccgttcgtcgccgccgcgctcgcggcgaagacgccgctgctcgtggtgacc
gcgaccggccgcgaggcggacgacctgacggccgaactgcacgagatgctcggcgacgtc
gtcgcgcagttcccgtcgtgggagacgctgccgcacgagcggctctcgcccagcgccgac
accgtcggccgccggttgcaggtgctgcgccggctcgcccaccccgaggaccgcgactac
ggccccgagctgcgggtgatcgtcgcgaccgtgcggtcgctggtgcagccgatggccccg
cgtctgggcgacatcgagcccgtcaccctgcgggtcggcgcggagcacgacttcgacgag
ctgatcgagcggctcgtcgagctggcctacacccgcgccgacatggtcggcaagcgcggc
gagttcgcggtgcgcggcggcatcctcgacgtcttcccgccgaccgcggaccatccggtg
cgggtcgagttctggggcgacgaggtcaccgagctgcgcccgttctccgtcgccgaccag
cggtccatcccagaactcgaggtgggcaccctcatcgccccgccctgccgggagctgctg
ctcaccgagcaggtcaaggagcgcgcggcccggctggcgcaggacaacccggccgatgcg
gcgctggtggagatgctcgacaagatggcctccggcattccggtcgagggcatggaggcg
ctgctgccggtgctgcagacgggcgagctgcagctgttgaccgacgtcgtgccggccggc
acgcacgtgctgctgtgcgatccggagaaggtgcgcacccgcgcggcggatctgatgcgc
accggtcaggagtttctcgaggcgtcgtggaccgcggcctcgctcggtggtgccgcgccg
ctggacaccgccaacatgaagggcgtggacctggccgcgtcggcgtaccggccgctgacc
caggtgcgggagacggcggaggcggcgggccggccgtggtggacgctgagcccgctggcg
tcgggcgccgacaccgaggtcgtgctcgacgtgcagccggcgccggaggtgcgcggctcg
gacgagctgctgacgatgctcttcgcgaacctgcgcgcgcacgtcaccaccggcgggcgg
gccgcgatcgtcgtcgcgggcgccggcaccgggcagcgggtgctcgagcgcctgcaggag
aacgacgtgcccgccgcgcgtctcgatccgggcgccgagccggtgcgcggcacggtcggg
gtgctgtgcggcgcgctgcacgacggcgtggtcctgccgggcgacggcgcggacgtgccc
ggcctggtgctcgtcaccgagtccgacctcacgggcaaccgggtgaccgccgccgagggg
cgccgcacgccggtcaagcgtcgcaaccaggtcgacccgctggcgctcaccgccggggac
atggtggtccacgaccagcacggcatcggccgtttcgtcgagatggtggaacggaccgtg
ggcggtgcccgccgcgagtacctggtcatcgagtacgccccgagcaaacgcgggcagccg
ggtgaccggctgttcgtgccgatggagtccctcgatcagctctcccgctacgtcggcggc
gagatgcccgccctgagcaagctcggcggctccgactgggccaacacgaaacgcaaggcg
cgcaaggctgttcgtgagatcgccggggagctggtgcagctgtacgcggcgcgccaggct
gcgcccgggcacgcgttcgccccggacaccccgtggcagaaggagatggaggacgcgttc
gcgttcaccgagacccaggatcagctcaccgtcatctccgaggtcaaggccgacatggag
aaggcggtcccgatggaccgcgtcgtcatcggcgacgtcggctacggcaagaccgagatc
gcggtgcgcgccgcgttcaaggccgtgcaggacggcaagcaggtcgcggtgctggtgccc
accacgctgctggcgcaacagcacctgcagaccttcacggagcggatggcgtcgttcccc
gtcaccgtcaagggcctgagccgcttcaccgatcccgccgagtcgaaggagacgatcgct
gccctcgccgacggcgccgtcgacatcgtcgtcggcacccaccggctgctgcagaccggc
gtgcgctggaaggacctcggcctcgtgatcgtggacgaggagcagcgattcggcgtcgag
cacaaggagcacatcaaggcgctgcgcacgcacgtcgacgtgctgaccatgtccgcgacg
ccgattccgcgcaccctggagatgagcatggccggcatccgcgagatgtcgacgatcctc
accccgcccgaggagcggcacccggtgctcacctacgtgggcgcctacgcggacaagcag
gtcgccgccgccatccgtcgcgagctgctgcgcgacgggcaggtgttctacgtgcacaac
cgggtcagctcgatcgacaaggccgccaagcggattcgtgacctcgtccccgaggcacgg
gtggcggtcgcgcacgggcagatgaacgaggacaccctcgagaagaccgtgcagggcttc
tgggaacgtcagtacgacgtcctggtgtgcaccaccatcgtcgaaacgggcctggacatc
tccaacgccaacaccctcatcgtcgaacgcgccgattcgctcggcctgtcgcagctgcat
cagctgcgcgggcgcgtcggccggtcccgcgagcggggttacgcgtacttcctgtatccg
ccggagaagccgctgaccgagacggcgtacgaccggctcgccacgatctcccagaactcc
gacctcggtgcgggcatggccgtggccatgaaggacctcgagatccgcggcgcgggaaac
gtgctgggcgcggagcagtccggtcacgtcgccggcgtcgggttcgatctgtacgtgcgg
ctcgtcggcgaggcggtggaggccttccgggccgccgcggacggccggcccgtcgccacg
gaggaggccgccaaggaggtgcgcgtggacctgccggtcgacgcccacatcccgccggac
tacgtgacctccgaccggctgcggctcgaggcctaccgcaagctcgccgcggcgcacgac
gacgacgcgatcgccgcggtggtcgaggaactcgtcgaccgctacggcccgctgcccgag
gaggtcggccggctggtgtcggtggccaagctgcgcctgctgtgccgcgagtacgccctc
gaggaggtcgcggtctccggcacccagctgaagatctcgccgatgcatctgccggattcg
aagcagatgcggctcaagcggctctacccggcggcgcagtaccgggccacgagcggcctg
gtgcagctgccgttgccgcggaccggtggggtgggctccgatcgggtgcgcgacgtcgag
ttgctgcagtacatcgcggacttcctgctcgccctcgacggtaaggcgcagggttcggtg
gacgtgcgcgtgccggccgtcgcgagcgtgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (22)   

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