KEGG   Robiginitalea biformata: RB2501_02075
Entry
RB2501_02075      CDS       T00992                                 
Name
(GenBank) DNA-directed RNA polymerase beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
rbi  Robiginitalea biformata
Pathway
rbi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rbi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    RB2501_02075
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rbi03021]
    RB2501_02075
   03400 DNA repair and recombination proteins [BR:rbi03400]
    RB2501_02075
Enzymes [BR:rbi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     RB2501_02075
Transcription machinery [BR:rbi03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     RB2501_02075
DNA repair and recombination proteins [BR:rbi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      RB2501_02075
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 Biotin_lipoyl efThoc1 AGA2 RnfC_N Tudor_1_RapA
Other DBs
NCBI-ProteinID: EAR14175
UniProt: A4CQ90
Position
complement(3276940..3280749)
AA seq 1269 aa
MFTKQTERISFASAKNIPEYPDFLDIQIQSFQDFFQLETKSDQRANEGLYNTFMENFPIT
DTRNQFVLEFLDYFIDPPRYSIQECIERGLTYSVPLKARLKLYCTDPEHEDFETIVQDVY
LGTIPYMTPSGTFVINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIEF
ATDINSVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLSEEVKVSKTGLKKVLGRKL
AARVLNTWHEDFVDEDTGEVVSIERNEIVLDRDTVLEKEHIDQIIETDVKTILLHKENNA
QSDYAIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEV
GRYRMNKKLGLDIGMDKQVLTKEDIITIIKYLIELINSKAEIDDIDHLSNRRVRTVGEQL
SAQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLSVFAK
VNSMGFLETPYRKVEEGKVDTANYTFLSAEEEEGKKIAQANIPLKKDGAIDAEKVIARLE
ADYPVVDPKEINYTDVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLKPESPI
VGTGLERQVATDSRVLINAEGDGVVESVDSKRITIKYGRTDEERLVSFDEDSKTYELVKF
RKTNQGTSINLKPIVRKGEKVKKGQVLCEGYATESGELALGQNLKVAFMPWKGYNFEDAI
VISEKVVREDIFTSIHIDEYALEVRDTKLGAEELTNDIPNVSEEATKDLDEYGMIRIGAE
VKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKAPPSLNGVVIDKKLFSR
SIKDKRKRSEDKEAIAKLELEYETKFEQLKDVLVEKLFQLVNGKTSQGVMNDLGEEVLPK
GKKYTLKMLNAVDDFAHLVGGSWTTDSKTNDLVADLLHNYKIKLNDLQGNLRRDKFTISV
GDELPAGIMKLAKVYIAKKRKLKVGDKMAGRHGNKGIVARIVRQEDMPFLEDGTPVDIVL
NPLGVPSRMNIGQIYETVLGWAGQKLGKKFATPIFDGATLDEINELTDKGEIPRFGHTYL
YDGGTGERFHQPATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGE
MEVWALEAYGASATLREILTVKSDDVIGRAKTYESIVKGESMPEPGLPESFNVLMHELKG
LGLDIRLEE
NT seq 3810 nt   +upstreamnt  +downstreamnt
atgttcacaaaacagactgaaagaataagctttgcctcggctaagaacataccggaatac
ccggatttcttggacattcagattcaatcgtttcaggattttttccagcttgagacgaaa
tctgaccagcgggccaatgaaggtttgtacaacaccttcatggaaaatttccccatcaca
gacacccggaaccagtttgtcctggaattcctggattacttcatcgacccgccccgttac
tccatccaggagtgtatcgaacgcgggcttacctacagcgtgccgctcaaggcgcggttg
aaattgtattgcacggatccggagcacgaggatttcgaaaccatcgtccaggacgtatac
ctgggcaccatcccgtacatgaccccaagcgggacgtttgtcatcaacggggcggaacgc
gtggtggtttcccagctgcaccgttcgcccggcgtctttttcgggcagtcgttccacgca
aacggcaccaagctttactcggcccgggtcatccccttcaagggatcctggatcgaattc
gccaccgatatcaacagcgtcatgtacgcgtatatcgaccggaagaaaaaattacccgta
accaccctgttccgggccatcggctttgaacgcgataaggacatcctggagatctttgac
ctttcggaagaagtgaaggtgtccaagaccggcctcaaaaaggtcctgggtcgcaagctc
gccgcccgggtgttgaacacctggcacgaggatttcgtggacgaggataccggggaggtg
gtttccatcgaacggaacgagattgtactggaccgggataccgtcctggagaaagagcat
atcgaccagatcatcgaaacggacgtaaaaaccatcctgctgcacaaggagaacaacgcc
cagagcgactacgcgatcatccacaacacgctgcagaaggacccgacgaactcagaaaag
gaagcggtggagcacatctaccgccagctacggaatgccgagccgccggatgaggaaacc
gcccgcggcatcatcgacaagctcttcttctccgaccagcgctacaacctgggagaggta
gggcgttaccggatgaacaaaaagctcgggctggatatcggcatggacaaacaggtgctg
accaaggaggatatcatcaccatcattaagtacctgatcgaactgatcaactccaaggcc
gagatcgacgatatcgaccacctttccaaccggagggtgcgtacggtaggggagcagctt
tccgcccagttcggcgtggggctggcccgtatggcccgtaccatccgcgagcggatgaac
gtgcgcgacaacgaggtgtttacccccattgacctgatcaatgccaagacgctgtcttcg
gtgatcaactcgtttttcggtacgaaccagctgtcccagtttatggaccagaccaacccg
ctggcggaaatcacgcacaaacggcggctgtcggccctcgggccgggaggtctctcgcgg
gagcgcgcaggttttgaggttcgtgacgtacactacacgcactacggaaggctctgcccg
atcgaaacccctgaagggccgaacatcggactgatctcctccctgtctgtattcgccaag
gtgaacagcatgggcttcctggagaccccttaccgcaaggtggaggaaggcaaggtcgat
acggccaactataccttcctgagcgccgaagaggaagagggcaagaaaattgcacaggcc
aacatcccgctcaaaaaggatggggccatcgatgcggaaaaagtaattgcgcgcctggag
gccgactacccggtggtggatcccaaggagatcaactacacggacgtagcgcccaaccag
attgcctccatctccgcttccctgatcccgttcctggagcacgacgatgcgaaccgggcg
ctgatggggtcgaacatgatgcggcaggccgtacccctgctcaagccggaatccccgatt
gtcgggaccgggctggagcgccaggtggccacggactcccgcgttctgatcaacgccgaa
ggcgacggggtggtggaaagcgtggattccaagcggatcaccatcaaatacgggcgtacc
gacgaggaacgcctggtgagcttcgatgaggactccaagacctacgaactcgtcaagttc
cgcaagaccaaccagggtactagtatcaacctgaagccgattgtccggaagggcgagaag
gtgaagaagggacaggtgctctgtgaagggtacgccaccgaaagcggcgagctggccctg
ggccagaacctgaaagtggcctttatgccctggaagggttacaattttgaggatgcgatc
gtcatatcggaaaaagtggtgcgcgaggatattttcacctccatccacatcgacgaatac
gccctggaagtacgggacaccaaactgggggccgaggagctcaccaacgacatcccgaac
gtctccgaagaggctaccaaggacctggatgagtacgggatgatccgtatcggggccgag
gtgaagcccggggatatcctgatcgggaagatcaccccgaaaggggagtccgacccgacg
ccggaggagaaactgctgcgcgccatattcggcgacaaggccggggatgttaaagacgct
tccctgaaggcgccgccctccctgaacggggtggtcatcgacaagaagctcttctcccgc
tccatcaaggacaagcgcaagcggtccgaggacaaggaggcgattgccaagctggagctc
gagtacgagaccaagtttgagcagctcaaggacgtgctggtggagaaactcttccagctg
gtgaacgggaaaacctcccagggcgtgatgaacgacctgggcgaagaggtcctgccgaag
ggcaagaagtacacgctgaagatgctgaacgcggtggacgattttgcccacctggttggc
ggcagctggacaacggactccaagaccaacgacctggttgcagacctgttgcacaactac
aagatcaagctgaacgacctgcaggggaacctgcgtcgggataagtttaccatctcggtt
ggggatgaactgccagccggcatcatgaaactggccaaggtgtacatcgccaagaagcgg
aagctgaaggtgggtgacaagatggccggacgccacggaaacaagggaatcgttgcccgg
atcgtgcgccaggaggatatgccgttcctcgaggacgggactccggtggacatcgtgctg
aacccgctgggggtaccctcgcggatgaacatcgggcagatctatgaaacggtactcgga
tgggccggacagaaactcggcaagaaattcgccacgccgatctttgacggggccaccctg
gacgagatcaacgagctcaccgacaagggcgagatcccgcgcttcggacatacctacctg
tacgacgggggtaccggggagcgcttccaccaaccggcaacggtgggtgtgatctacatg
ctgaaactcggccacatggtggacgacaagatgcacgcccgttccattgggccgtactcc
ctcatcacccagcagccgttgggcggtaaggcgcagttcggtggccagcgtttcggggaa
atggaggtctgggccctggaggcctacggcgcctctgccaccctgcgcgagatactgacg
gtgaagtccgacgacgtaatcggccgggcgaagacttacgaatccatcgtgaaaggggaa
agcatgccggaacccggcctgccggaatcctttaacgtactgatgcacgaactcaaggga
ttgggtctggacatccgcctggaggagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (207)   
   KEGG ORTHOLOGY (1)   
   RefGene (204)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (226)   

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