KEGG   Robiginitalea biformata: RB2501_08995
Entry
RB2501_08995      CDS       T00992                                 
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
rbi  Robiginitalea biformata
Brite
KEGG Orthology (KO) [BR:rbi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rbi03032]
    RB2501_08995
   03400 DNA repair and recombination proteins [BR:rbi03400]
    RB2501_08995
Enzymes [BR:rbi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     RB2501_08995
DNA replication proteins [BR:rbi03032]
 Prokaryotic type
  DNA Topoisomerases
   RB2501_08995
DNA repair and recombination proteins [BR:rbi03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      RB2501_08995
SSDB
Motif
Pfam: Topoisom_bac Toprim_C_rpt Toprim
Other DBs
NCBI-ProteinID: EAR17027
UniProt: A4CJB9
Position
1258621..1261083
AA seq 820 aa
MAKNLVIVESPAKAKTIEKFLGKDFKVTSSFGHIADLPSRELGVDVDKDFSPKYVVDKEK
KALVKKLKELASKAETIWLASDEDREGEAISWHLAETLKLDADKTRRIVFNSITKSAIQK
AIENPRKINYDLVNAQQARRILDRLVGYELSPVLWKKIKPGLSAGRVQSVAVRLIVERER
AIEEFEPQSSFKVAAEFRTENGATLPAKLNESFDTETEAQEFLAGLANASFAVDSLDTKP
AKKSPAAPFTTSTLQQEASRKLYFSVSRTMQVAQRLYEAGLITYMRTDSVSLSGEAIAAA
KEEIVGNYGEKYSKVRKFQSKSKGAQEAHEAIRPTDMGLQRPNVERDQARLYELIRMRTL
ASQMSDAQLERTQVKIRNDRDDRLFSANGEVIKFDGFLKVYLEGKDEEDAEEQDGMLPAM
QVDEALTNNYITATQRFTRPPYRYTEASLVKKLEELGIGRPSTYAPTISTIQNRGYVEKG
TVDGTEREYLQLTLEGGGVKRKELSETVGSDKGKLVPTDIGMIVNDFLVSHFANILDYNF
TAKVEKDFDDIATGEEDWQDVLRDFYKDFHPNVLDVEENADRASGERVLGTDPETGRQVA
VRLGRFGPMVQIGTADEEEKPQFASLLPDQSLATITYDEAMELFKLPRKLGTFEGDEVEA
NVGRYGPYVRYGKKFVSLDEGESVFDVDMERAAELIRAKKKQDAPIASYEDKPVTKGKGR
FGPFIKWDGMFINVPKKYDFDNLSQADIEELIEAKKKKEAEKLVREWPEEDIRIEKGRWG
RHTVIKGRKKVDLSKDVDPQAVTLEEAQELLSKKKTRKKS
NT seq 2463 nt   +upstreamnt  +downstreamnt
atggcaaaaaacctggtaatcgtggagtcgcctgcaaaggcaaaaaccattgaaaaattc
ctggggaaggacttcaaggtaacctccagtttcgggcatattgccgacctgccctcgcgg
gaactcggggtggatgtagacaaggacttcagtccgaaatacgtggtcgataaggagaag
aaggcactggtcaagaagttgaaggaactcgcctcgaaggcggaaaccatctggctggcc
agcgatgaggaccgggaaggggaggccatttcctggcacctggccgagaccctgaaactg
gacgccgacaagacccggaggattgtctttaattccattaccaaatcggctatccagaag
gccattgagaacccgaggaaaatcaactacgacctggtcaacgcccagcaggcgcgccgg
atcctggaccgtctggtagggtatgaattgtcgcccgtcctctggaagaaaatcaagccg
ggcctctccgctggccgggtgcagtcggtggccgtacgcctgattgtggaacgggagcgg
gccatcgaggaattcgaaccgcagagcagcttcaaggttgccgccgaattccggacggaa
aacggggccaccctgcccgccaaactcaatgagagcttcgataccgaaacggaggctcag
gaattcctggcggggctggccaacgcctcctttgccgtggacagcctggacaccaaacct
gctaagaaatccccggctgcgccgtttaccacttccaccctccagcaggaagcttcccgc
aaactctatttttcggtctcccgtaccatgcaggtcgcccagcggctctacgaagcgggg
cttattacctacatgcgtacggacagcgtgagtttgtccggggaggccattgcggctgcc
aaggaagaaattgtagggaattacggggaaaagtacagcaaagtccggaagttccagtca
aaatccaaaggggcccaggaggcgcacgaggccatccgtcccaccgatatggggctgcag
cgccccaacgtagagcgcgaccaggcccggttatacgagctgatccgcatgcggaccctg
gcctcgcagatgagtgacgcccagctggagcgcacccaggtaaagatccgcaacgaccgg
gacgaccgcctcttcagcgcgaacggggaggtgattaaatttgacgggttcctgaaagtg
tatctggaaggcaaagacgaagaggacgccgaagaacaggacggcatgctcccggccatg
caggtagacgaggcgctgaccaacaactacatcacagccacccagcggtttacccgaccg
ccgtaccggtatacggaggcttccctggtcaaaaagctggaggaactcgggattggccgc
ccctccacgtatgccccgaccatttccacgatccagaatcgcgggtatgtcgaaaaaggc
acagtggacggcacggagcgggagtacctgcaactcaccctggaaggaggcggcgtgaag
cggaaggaattgagcgaaaccgtgggatcggacaagggcaagctcgtgccgacggatatc
gggatgatcgtcaacgatttcctggtgagccattttgccaatatcctggattacaatttt
accgccaaggtggaaaaggactttgacgacattgccacaggggaggaagactggcaggat
gtgcttcgggatttctataaggatttccacccgaatgtgctcgatgtcgaggagaatgca
gaccgcgccagcggggaacgcgttttgggaaccgacccggagaccgggcggcaggtggcc
gtgcgtttgggccggtttggccccatggtacagatcgggacagcggacgaggaggagaag
ccccagtttgccagtttgctcccggaccagtccctggccaccatcacctatgacgaggcg
atggagttatttaagctgccccggaaactgggcacctttgaaggggatgaggtggaggcc
aatgtgggccggtatggcccgtatgtgcgctacggcaaaaaattcgtttccctggacgag
ggtgaaagcgtctttgacgtggacatggagcgggctgccgagctgatccgcgccaagaaa
aaacaggacgccccgattgcctcctatgaggataagccggtgaccaagggcaagggccgg
tttgggccgttcatcaaatgggacggcatgtttatcaacgttcccaagaaatacgatttc
gacaacctgagccaggcggatatcgaagaactgatcgaagccaagaagaagaaagaggcc
gagaagctcgtccgggagtggcccgaggaggacatccggattgagaagggccgctgggga
cgccatacggtgatcaagggccgcaaaaaggtagacttgtccaaggacgtggacccgcag
gcggtgactctcgaggaagcacaggaactgctcagcaagaagaaaacgcgtaaaaaatcc
taa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (42)   
   KEGG ORTHOLOGY (1)   
   RefGene (39)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (52)   

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