KEGG   Rubrivivax benzoatilyticus: RBXJA2T_08950
Entry
RBXJA2T_08950     CDS       T04092                                 
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
rbn  Rubrivivax benzoatilyticus
Pathway
rbn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rbn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RBXJA2T_08950
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rbn03019]
    RBXJA2T_08950
Enzymes [BR:rbn01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     RBXJA2T_08950
Messenger RNA biogenesis [BR:rbn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     RBXJA2T_08950
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 P-loop_SecA UTP25 AAA_22
Other DBs
NCBI-ProteinID: EGJ10442
AA seq 500 aa
MNFSDLGLAEPLLRAVREQGYDVPTPIQAQAIPAVLQGGDLLAGAQTGTGKTAGFTLPML
QRLSASKPVRDSRGRIAVRALVLTPTRELAAQVEESVRAYGKYLPLTSMVMFGGVGMQPQ
IDRLRKGVDILVATPGRLLDHHGQGTLDLSQVQILVLDEADRMLDMGFIHDIKKVLAVLP
QKKQSLLFSATFSDEIKALADRLLNQPALIEVARRNATADTIAQKVHPVGREKKKELLAH
LIRQGDWHQVLVFTRMKHGANRLAEYLNEQGITAMAIHGNKSQGARTKALAEFKAGTLQV
LVATDIAARGIDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGASGEAVSLVCLDEEIFLR
DIQRLIKREIPVQVIPGFEPPAGERAEPIVLGRMTIGVGGTRRNAGGGMPSRGGRPQGAS
GGGNGGGGQRPAGAGGAVVRRRRAAGPRTATAAAAPRKARAGRVAERRPPEAPMKKAPRG
AFCLSAAGCPAAPCHSPPNL
NT seq 1503 nt   +upstreamnt  +downstreamnt
atgaatttttccgatctcggccttgccgagccgctgctgcgcgccgttcgcgaacagggc
tacgacgtgccgaccccgatccaggcccaggcgatcccggcggtgctgcaaggcggcgac
ctgctcgccggcgcgcagaccggcaccggcaagaccgccggtttcacgctgccgatgctg
cagcgtctgtccgcttccaagccggtgcgcgactcccgcggccgcatcgccgtgcgcgcg
ctggtgctgacgccgacacgtgaacttgccgcccaggtcgaggaaagcgttcgtgcctac
ggcaagtacctgccgctgaccagcatggtgatgttcggcggcgtcggcatgcagccgcag
atcgaccgcctccgcaaaggcgtcgacatcctcgtcgcgacgcccggccggctgctggac
caccatggccagggcacgctggacctgtctcaggtgcagatcctggtgctcgacgaagcc
gaccgcatgctcgacatgggcttcatccacgacatcaagaaggtgctcgcggtgctgccc
cagaagaagcagagcctgctcttctcggcgaccttcagcgacgagatcaaggccctggcc
gaccgcctgctgaaccagccggcgctgatcgaggtcgcgcgccgcaacgccaccgccgac
accatcgcgcagaaggtgcacccggtcgggcgcgagaagaagaaggagctgctggcgcac
ctgatccgccagggcgactggcaccaggtgctggtcttcacgcgcatgaagcacggcgcc
aaccgcctggccgagtacctgaacgagcagggcatcacggcgatggcgatccacggcaac
aagagccagggcgcgcgcaccaaggcgctggccgagttcaaggccggcacgctgcaggtg
ctggtggccaccgacatcgccgcgcgcggcatcgacatcgaccagctgccgcacgtcgtc
aactacgagctgccgaacgtgccggaagactacgttcaccgcatcggccgcaccggccgt
gccggcgccagcggcgaggcggtctcgctggtctgcctggacgaggagatcttcctgcgc
gacatccagcgcctgatcaagcgcgagatcccggtgcaggtgatccccggcttcgagccc
ccggccggcgagcgcgccgagccgatcgtgctcggccgcatgaccatcggcgtcggcggc
acgcgccgcaacgccggtggtggcatgccctcgcgcggcggccggccgcaaggcgcgtcg
ggcggtggcaacgggggtggtggccagcgcccggccggcgccgggggcgcggtggtgcgt
cgtcgccgcgcggcgggtcctcgcacggccacggcggcggccgcgcctcgcaaggcccgc
gcgggccgcgtcgctgagcggcggcctcccgaggcaccaatgaaaaaggccccgcgaggg
gccttttgcctgtctgccgccggttgcccggcggcaccgtgtcactcgccgccgaacttg
tag

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