KEGG   Roseiflexus castenholzii: Rcas_0198
Entry
Rcas_0198         CDS       T00585                                 
Name
(GenBank) DNA polymerase III, alpha subunit
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
rca  Roseiflexus castenholzii
Pathway
rca03030  DNA replication
rca03430  Mismatch repair
rca03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rca00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Rcas_0198
   03430 Mismatch repair
    Rcas_0198
   03440 Homologous recombination
    Rcas_0198
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rca03032]
    Rcas_0198
   03400 DNA repair and recombination proteins [BR:rca03400]
    Rcas_0198
Enzymes [BR:rca01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Rcas_0198
DNA replication proteins [BR:rca03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     Rcas_0198
DNA repair and recombination proteins [BR:rca03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     Rcas_0198
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon
Other DBs
NCBI-ProteinID: ABU56331
UniProt: A7NFV0
Position
238604..242422
AA seq 1272 aa
MNDFVHLHVHSEYSLLDGYAATGAIAARAVELGMDSIALTDHGVMYGAMEFYTNAKKAGI
KPIIGLEAYMAPGSRREATSRGAKHYYHLLLLAKDEIGYRNLVRLTTRAHLDGMGKGVFA
RPRIDRALLEQHHEGLIVTSACIAGEVIQRLKEEQKEQAREIAAYYRDLLGPDNYFLELQ
LHDNTPELEAINDELVRIGKELGIPLVVTNDTHFVRPEDVDAHKMILALGYNMTLKELCA
KQYEMDATYHIMSGEEMWRRFKKYGTTPLENTRRIAERCNLNLEFGRVQLPTIDIPEGHD
ASSYLRFVCEEGLMRRFNGNPPEAYMKRLEYELDVINQTGFPDYMLIVWDYVKFARARGI
PCLPRGSAGASLILYCLGITDVDPVKNKLLFERFLSPERLEMPDIDIDFADSRRHEVLEY
IAERYGRENTAQIITYGTLGAKAAIRDIGRVLDIPLSEVDRVARLIPALPVGTTIAQALE
RVPELKQIYETNPELANLIDWAQKVEGRMKSVGTHACGVVVSRTPLEEIVPLQRTTKDEN
ALMAAFEGPTLQKMGLLKMDVLGLTNLSVVAEALQYIAQTTGKTMELADIPLDDPKVFEA
LGRGETTNVFQLESPGMTRYLMQLKPTRVEDLYAMVALYRPGPLEQIPVYIHNKNHPQDI
TYLHPILKPILEDTYGVIVYQEQIMRLLQEVADYTLGQAYIVIKAISKKDKKLMAENEVK
FKQGCLRKGLTQEQADQLWELILPFAGYSFNRPHSTLYGLLSYQTAWLKVNYPVEYMAAV
LKGAGGATDDIAKAVNECRQRGVPVLGPNINDSAFDFTIREFRDPSDGNLKRGILFGLAA
IKNVGAGPIEAILRERDAGGPFRSLEDVCERVDRHALNKRVLESLIKCGALDALPGNRWQ
KLEILDAAMEAGARAQKNRETGQIDMFGGLVSQAAEVIAALPLPVIEETAERRKEKLAWE
KELLGVVFSSDPRKTALERANIEHRVPLAAIRNAEGLPDYLGKVHTFAGMLTRVRMIATK
KGDTMLVATLEDENEDTVELVAFPKACEKYRDLLRQDALLIVQAKVDERNGVVQLVLESA
TLLDLSAAEPPPAAPEMDLEGLAEEGEPEVITTALHDASEEPAAPTDAAGAAPAPAAPPE
VHTPPASSASAPPPITTPISIIKPHAPSRSRTAPASNGNGHDHHAPATNGDTASGRTMRL
RFQRSADQEADIQLMQHVYDLLRGRDGADQVVIQLDTLDRRVLLRMRQTITCDDGLIDAL
RGVLGEACVSVE
NT seq 3819 nt   +upstreamnt  +downstreamnt
atgaacgacttcgttcacctgcacgttcactccgaatacagcctgctcgacggatatgcc
gctaccggcgccatcgctgcacgcgcggtcgaactggggatggacagcatcgccttgacc
gaccacggcgtcatgtacggcgccatggagttctacaccaacgcaaagaaggccggcatc
aagccgatcatcgggctggaagcctacatggcgcctggatcgcgtcgggaagcgacgagc
cgcggcgcaaaacattactatcacctgctgttgctggcgaaagacgagatcggctaccgc
aaccttgtgcgcctgacgacgcgcgcccaccttgacggcatgggaaagggggtcttcgcc
cgtccgcgcattgatcgcgcattgctcgaacagcaccacgaggggttgattgtcacatca
gcatgcattgccggcgaagtcattcagcgcctgaaagaagagcagaaggaacaggcgcgc
gaaatcgccgcctattaccgcgatctgctcgggcccgacaactatttcctcgaactgcaa
ctccacgataacacgccggaactcgaagcgatcaacgacgaactggtgcgcatcgggaaa
gaactgggcattccgctggttgtgacgaatgatacccactttgtgcgccctgaggatgtc
gacgcgcacaagatgatcctggcgctcggctacaacatgaccctcaaggagttgtgcgcg
aagcagtatgaaatggacgcgacgtaccacattatgtccggcgaagagatgtggcgacgg
ttcaaaaagtatgggacgactccgctcgagaatacccgccggatcgccgagcgctgcaac
ctgaacctggagttcggtcgcgtccagttgccgaccatcgacattcccgaagggcacgac
gcctcttcctacctgcggttcgtctgcgaagaagggttgatgcgacgcttcaacggcaat
ccgcctgaagcgtacatgaagcgtctcgagtacgaactcgacgtgattaatcagacggga
ttccccgattatatgctgatcgtctgggactacgtcaagttcgcgcgcgcacgcggcatt
ccctgcctgccacgcgggtcggcgggtgcgtcgctgattctctactgcctgggcatcacc
gatgtcgatccggtcaagaacaaactgctcttcgagcgcttcctcagcccggaacgcctg
gagatgccggatatcgacatcgatttcgccgatagccgtcgccacgaggtgctcgaatat
atcgccgaacggtatggacgcgagaacaccgcgcagatcattacgtatggcacgttgggc
gccaaagcggccatccgcgatatcgggcgggtgctggacatcccgctcagcgaggttgat
cgcgtcgcccgactcattccggcgcttccggtcgggacgacgattgcgcaggcgctcgaa
cgggtgccggagctgaaacagatctacgagaccaaccccgaactggcgaacttgatcgat
tgggcgcagaaggtcgaagggcggatgaagagcgtcggcacccacgcctgcggcgtcgtg
gtcagtcgcaccccgctcgaagaaattgtcccgctccagcgcacgacgaaggacgagaac
gcgctgatggcggcattcgagggacccacgctgcaaaagatgggtttgctgaaaatggac
gtcctggggctgaccaacctctcggttgtggctgaggcgttgcagtatatcgcgcagacg
accggcaaaacgatggaactcgccgacattccactcgacgatccaaaggtgttcgaggcg
ctcggtcgcggcgaaacgacgaatgtgttccaactggaaagtccagggatgacccgctat
ctgatgcaactcaagccaacccgcgtcgaagacctgtacgcgatggtcgcgctgtaccgt
cctggtccgctcgaacagattccggtctatattcacaacaagaaccatccccaagacatc
acctacctccatccgatcctgaaaccaatccttgaagacacctacggcgtgatcgtctac
caggaacagatcatgcgcctgcttcaggaggtcgccgattatacgcttggtcaggcgtat
atcgtcatcaaagccatcagcaagaaagataagaagttgatggcggagaacgaggtcaag
ttcaaacagggatgcctcagaaaagggttgacccaggagcaggcggatcagttgtgggaa
ttgatcctgccatttgccggctactccttcaaccgtccacactcgacgctctatggactg
ctgagttatcagaccgcctggctcaaggtgaactatccggtcgagtacatggccgccgtg
ctgaagggcgccggcggcgcgaccgacgacatcgccaaagcggtcaacgaatgccgtcag
cgcggcgttccggtgcttggacccaatatcaacgacagcgcattcgattttaccatccgc
gagttccgcgatccgtcggacgggaacctcaaacgcggcatcctgttcggtctggcagcg
atcaagaatgtcggcgccggaccgattgaggcaatcctgcgcgaacgcgacgccggcggt
ccgtttcgctcgctcgaagatgtgtgcgagcgggtggatcgtcatgcgctgaacaagcgt
gtgctcgaaagcctgatcaagtgcggcgcgctcgacgcacttcccggcaatcgctggcag
aagctggagattctcgatgccgcaatggaggcgggggcgcgcgcgcagaagaaccgcgaa
accgggcagatcgacatgtttggcggtcttgtgtctcaggctgccgaggtcatcgccgct
cttccgttgccggtcattgaagaaactgcggaacgccgcaaggaaaaactggcgtgggaa
aaagagttgctcggcgtggtcttttcgagcgatccgcgcaaaacggcgctggaacgcgca
aatattgagcatcgcgtgccgcttgccgccattcgcaacgctgaagggttgccggactat
ctgggcaaggtgcatacctttgccgggatgctgacgcgcgttcgcatgattgcgaccaag
aagggcgacacgatgctggttgcgacgctcgaagacgaaaacgaggatacggtcgaactg
gtcgccttcccgaaagcctgcgagaaataccgcgacctgctgcggcaggatgcattgctg
atcgtgcaggcaaaggtcgatgaacggaatggtgtggtgcaattggtgctcgaaagcgcg
accctcctcgatctgtcggcggctgaaccgccgccggcagcgcccgaaatggatctcgaa
gggctggcggaagaaggggagccggaggtgataacgactgccctccatgacgcctcagaa
gagccggctgcgccaacggatgccgccggtgcagcgccggcgccggcagcgccgccagaa
gtgcatacgccgcccgcttcatccgcgagcgcaccaccgccgattaccaccccgatctcg
atcatcaaaccgcacgcaccatcgcgctcccggacagcgcctgcctcgaacggtaatggg
cacgatcatcacgctccggcaacgaacggtgacacagcatcaggacgcacgatgcggctg
cgcttccaacgctctgccgatcaggaagcggacattcagttgatgcagcacgtctatgat
ctgttgcgcggacgcgatggcgccgatcaggtggtgattcagctcgacacccttgatcgc
cgggtgttgctgcgcatgcgccagacgatcacctgcgacgacggattgatcgatgcgctg
cgcggcgtgcttggcgaagcgtgcgtgtcagtggagtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

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