KEGG   Ricinus communis (castor bean): 8258661
Entry
8258661           CDS       T01087                                 
Name
(RefSeq) uncharacterized protein LOC8258661
  KO
K07573  exosome complex component CSL4
Organism
rcu  Ricinus communis (castor bean)
Pathway
rcu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rcu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    8258661
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rcu03019]
    8258661
Messenger RNA biogenesis [BR:rcu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     8258661
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     8258661
SSDB
Motif
Pfam: Ammonium_transp EXOSC1 ECR1_N RRP4_S1
Other DBs
NCBI-GeneID: 8258661
NCBI-ProteinID: XP_048236306
Position
10:10460500..10475367
AA seq 1051 aa
MRCRRGAAAAASVWTKRANRKMEGEKEEMVTPGEVLGKASELKAGKGAYVAPYRNTDIFY
VYSSLSGFLRTLAPTPDSPDQRPTVEVTGLKARGAVPEAGSVVIARVTKVMAKMASADIM
CVGPKSVREKFTGIIRQQDVRATEIDKVDMHLSFRPGDIVRAVVLSLGDARAYYLSTAKN
ELGVVSAESTAGGTMVPISWTEMQCPLTGQIEQRKVAKLGNQTRQKENISLIGRTEMNSL
TLFHKPLATLSSPKFLTNSPHISHSLTISSKPKTRHNHNYNLTTTPLQLHALTESSDSSS
QSLDPSLQSLLLQLSDCFDLPADYFKELPRDLRLDLNDAAFDLSSGPVIDECGQELGKVL
LNLSRAWELADTATSRALVSQLPVLERTLTNKAKAALGKRLVSAGRRFQSMGQYGQGEMQ
KVAQEMITTGKLLSEIPILTTNEEPKEETRVFKFGELQVAITPEKANIGAAIGVVFGILS
WVLGQGIQSIPESSLQYANDNALLLAKSLRGALLVIFYSSSVLSALTSVGLLLLAISFSL
IMASFTCSASELAPLLSTATNSTAAATYLCSQFTTIANQISDTTYAVNNTYLLFSAYLVF
AMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGYAFAFGSPSNGFIGRHFFG
LQDFPSPSADYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPIVSHWV
WSGDGWASASKSDNNLLFGSGAIDFAGSGVVHMVGGIAGLWGALIEGPRMGRFDRSGRSV
ALRGHSASLVVLGSFLLWFGWYGFNPGSFLIILKSYGDSGGYYGQWSAVGRTAVTTTLAG
CTAALTTLFSKRLLVGHWNVLDVCNGLLGGFAAITSGCAVVEPWAAIICGFVASWVLIGC
NKLAEKFKYDDPLEAAQLHGGCGAWGLLFTGLFAAKNYVNEVYPNKPGRPYGVFMGGGGK
LLAAQIIQIIVIAGWVTATMAPLFYGLNKLRLLRISSADETAGMDLTRHGGFAYAYHDED
DPSLKPSIMMRRVEPTDESTPNHEASTAMNV
NT seq 3156 nt   +upstreamnt  +downstreamnt
atgcgatgccgcaggggggctgctgctgctgcctctgtttggacaaaaagggcaaacaga
aaaatggaaggagagaaagaagagatggtgacaccaggagaagtattaggtaaagcaagt
gaactcaaagcagggaaaggggcatacgtcgcaccctatcgtaacactgatatcttttac
gtctactcctctcttagcggtttcctccgtactctagcccctactcccgactctcctgac
cagagaccaactgttgaagtaactggactcaaggctcgtggtgctgttccagaggctggt
tctgttgtcattgcccgagttactaaagtgatggctaagatggcttcagctgacattatg
tgtgttggtcccaagtctgtacgagagaagttcactggcataattaggcaacaagatgtt
agagcaactgagattgacaaagtggatatgcatttatcatttcgcccaggtgacattgtc
agagctgtagtgttgtcccttggagatgcacgggcttattatctttctaccgccaagaat
gagttaggcgttgtatctgcagagagcacggcaggtggaacaatggttcccataagctgg
acagagatgcaatgcccattgactggtcaaattgaacaaagaaaggttgccaagcttgga
aatcaaacccgccaaaaagaaaatatcagtttgattggcagaacagagatgaattctctt
accctcttccataaacctctcgctacactctcttcacctaaatttctcacaaattcaccc
catatctctcattctttaactatctcttcaaaacccaaaacgcgtcataatcataattac
aatttaacaaccactccattgcaattgcatgctctcactgaatcgtctgactcctcttct
caatcccttgacccttctcttcaatcccttctcttgcagctctctgattgttttgatctt
ccagcagactattttaaagaattaccacgtgatcttcgattagatttaaatgatgcagct
tttgatctttccagtggacccgttatcgatgagtgtggccaagagctgggaaaggtctta
ctaaatctctctcgagcatgggaattagctgacactgcgacttctcgtgcattagtaagc
cagctccctgtgctagagaggactttgacaaacaaggccaaggcagctcttggtaagcgt
ttggtatctgctggaaggagattccaatccatgggacagtatggtcagggtgaaatgcag
aaggttgcacaagagatgattacaactggaaaacttctatctgaaattccaatattaaca
accaatgaagaaccaaaggaagaaaccagagtcttcaagtttggcgaacttcaggttgca
ataacgccagagaaagccaatataggggctgccattggagttgtttttgggattctttca
tgggtactaggtcagggcattcaaagcataccagagagctcattgcaatatgcaaatgac
aatgcattactgctagctaagtctctaagaggagctctacttgtgattttttactcatca
tcagttctgtctgctttgacctctgtgggacttctcttgcttgccatctctttctctctc
atcatggcttcctttacctgctcagcctcggagctagctcctcttctttccaccgccaca
aactccaccgcagcagccacttatctgtgttctcagtttactacaatagccaaccaaatt
tcggacacaacatatgcagttaacaacacttaccttctcttctctgcatacctagtcttt
gccatgcaacttggttttgccatgctctgtgcaggctctgttcgagccaagaataccatg
aatataatgcttactaacgttcttgatgctgctgctggcggtctctcttactatcttttt
ggctatgctttcgcctttggttctcctagcaatggctttattggtcgccatttctttggc
ctacaagacttcccttctccttcggctgattatagtttctttctttatcagtgggctttc
gccatagctgctgctggtataactagtggctccattgctgaaagaacccagttcgtcgcc
tacttgatttattcttctttcttgactggctttgtctaccctattgtctcgcattgggtt
tggtctggtgatggctgggccagtgcttccaaatccgataacaatcttttattcggctcg
ggtgccatcgactttgctggatccggtgtggttcatatggtcggtggaattgctggttta
tggggcgctttaattgaaggcccgcgtatgggccggttcgatcgctcgggtcggtctgtg
gctttacggggtcatagtgcctccttagtcgtactcggttcgtttctactatggttcggc
tggtacgggtttaacccgggttcatttttgataatcttgaagagttacggtgacagtgga
gggtactatggtcaatggagcgcagtagggaggacagctgtcacaacaacactggctggg
tgcacagctgcgcttacaaccttattcagtaaaagattattagtgggtcactggaatgta
ctcgatgtatgtaacggtttattggggggttttgctgcaatcacctcaggttgcgccgtg
gtagaaccatgggctgcaatcatatgcggattcgttgcttcatgggttttgattgggtgc
aacaagctcgcagagaaattcaagtatgatgacccacttgaagcagctcaattgcacggt
ggatgtggggcgtggggcctactatttacagggttatttgctgccaagaactatgtcaat
gaggtttatcccaacaagccagggaggccctacggggtgttcatgggtggtggcggcaag
cttttagcggctcagatcattcagatcatagtgatagcagggtgggtgacggccacaatg
gccccattgttttacgggcttaacaagttgcggttgttgaggatctcaagcgctgatgaa
actgcaggcatggatttaaccagacacggaggatttgcttacgcgtatcatgatgaagat
gatccttcacttaaaccttctattatgatgagaagggtagagcccactgatgaaagtaca
ccaaatcatgaagcatcaacggccatgaatgtctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (34)   

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