KEGG   Ricinus communis (castor bean): 8263263
Entry
8263263           CDS       T01087                                 
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X1
  KO
K14328  regulator of nonsense transcripts 3
Organism
rcu  Ricinus communis (castor bean)
Pathway
rcu03013  Nucleocytoplasmic transport
rcu03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:rcu00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    8263263
   03015 mRNA surveillance pathway
    8263263
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rcu03019]
    8263263
Messenger RNA biogenesis [BR:rcu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     8263263
   mRNA cycle factors
    P-body specific factors
     8263263
SSDB
Motif
Pfam: Smg4_UPF3 RRM_2
Other DBs
NCBI-GeneID: 8263263
NCBI-ProteinID: XP_048231524
Position
6:complement(16481777..16491116)
AA seq 527 aa
MVYKGMKGGQAEKTKVVVRHLPPTISQGSFLEQIDVVFSGRYNWVSFRPGKSSQKHQSYS
RAYIDFKRPEDVIEFAEFFNGHLFVNEKGTQFRAIVEYAPSQHVPKQWSKKDGREGTIVK
DPAYLEFLELISKPAENLPSAEIQLERREAERAASAAKDAPIVTPLMDFVRQKRAAKTGS
RRILSNGKISRRSGASGSPSSSSSKRSSEKKRVSATMYVLRDSAKSTSGKDKSTYLLVPK
RDDQQFSDKSTPFASASGTEVLEDESGVSGITDTGKKKILLLKGKEKEISALSGGMSKQN
AASFDKNVTSSAIKQSQRRESSGRIIRSILLNKDSRQNQSSGFQSEQQIQSSNLEKEKRL
PRPAHVQLVLKDVNGSSDDKFVGNDLHGFSGEKQEKRTRNKDRPDRVVWTPLRRSDGSYA
SDESLSSSASQSTHTGQDSSQGNLGDIKVDSSNSRSGDVKTLGSGRSSHSSLDNGSHKHF
GRRGPSHTVRDADGSSLEGKPSKRGGGASGYGSHEKQVWVQKSSSGS
NT seq 1584 nt   +upstreamnt  +downstreamnt
atggtttataaaggtatgaaaggtggtcaagctgagaagacaaaagtggtggtgcgtcac
ttaccgccgacgatttctcaaggttcgtttttagagcaaatcgacgtcgttttctctggg
agatataattgggtctcgtttcgtccgggcaagagcagccagaagcatcaatcctattcc
agagcctatattgacttcaaaaggccagaagatgttatcgagtttgcagagttttttaat
ggccatcttttcgttaatgagaagggcactcaatttagagctattgttgagtatgctcct
tcacagcatgtgccaaagcagtggtcaaagaaggatggtcgtgaaggcaccatagtaaaa
gatcctgcatacttggagtttcttgaattgatatcgaaaccagccgaaaatcttcccagt
gcagagatacaattggaacgaagagaagctgagcgagctgcaagtgctgcaaaagatgct
cctattgttacgcccttaatggactttgttcgccagaaacgagctgcaaagactggttct
cggagaattttgtccaacggaaaaatcagcagaaggtctggtgcaagtggaagtcctagc
tcatcatcatccaaacgaagttctgaaaagaagagggtttcagccacaatgtatgtttta
agggactctgcaaaaagtactagcggaaaggacaaatcaacttacttattggttcctaag
cgagatgaccagcaattttctgataaaagtactccatttgcttctgcatctggaactgaa
gtcttggaagatgaaagcggagtttctggaattactgacaccgggaaaaagaaaatcctg
cttctgaaaggaaaagagaaagaaatttcagctttgtctggtggcatgtcaaagcagaat
gcagcatcatttgataaaaatgtgactagttcagctataaaacagagccagcgacgtgag
tccagtggaaggataatcagaagcatacttctaaataaggattcacgccaaaatcaatct
tctgggttccaatctgagcagcaaattcaatcctccaatttagaaaaggagaaacgtctt
ccgcgtcctgcacatgtgcagctggtcttgaaggatgtaaatggatcttcagatgacaag
tttgttggcaatgatttgcatggcttttcaggtgagaagcaggaaaagcgcacaagaaat
aaggatagacctgatcgtgttgtatggactcctcttcgtcgatcagatggctcatatgca
agtgatgaatccttgtcatcatctgcatctcagtctacacatacgggtcaagattcttca
caaggaaatcttggagatataaaggttgattcatctaattcaaggagtggagatgttaaa
acccttggaagtggacgaagcagtcattcttctttagataatggatctcataaacatttt
ggccggcggggaccatcacatacagtgagggatgctgatggctcatctcttgaggggaag
ccttcaaagagaggtggcggtgcttctggttatggttcccacgagaagcaagtgtgggtt
caaaagtcaagttctggctcttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (2)   
   Pfam (2)   
All databases (20)   

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