KEGG   Ricinus communis (castor bean): 8272526
Entry
8272526           CDS       T01087                                 
Name
(RefSeq) WD repeat-containing protein VIP3
  KO
K12602  WD repeat-containing protein 61
Organism
rcu  Ricinus communis (castor bean)
Pathway
rcu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rcu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    8272526
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rcu03019]
    8272526
Messenger RNA biogenesis [BR:rcu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     8272526
SSDB
Motif
Pfam: WD40 ANAPC4_WD40 NBCH_WD40 eIF2A Ge1_WD40 Cytochrom_D1 Nbas_N Nup160 WD40_like PD40
Other DBs
NCBI-GeneID: 8272526
NCBI-ProteinID: XP_015571739
Position
3:28512648..28514531
AA seq 321 aa
MKLAGLQSIENAHDESVWAATWVPATQTRQALLLTGSLDETVKLWRSDELNLERTNTGHC
LGVVSVAAHPSGVIAASASLDSFVRVFDVDTNATIATLESPPSEVWQMQFDPKGTTLAVA
GGGSASVNLWDTATWKQIASLSVPRPEGPKPSDKNSSKKFVLSVAWSPDGKRLACGSMDG
TISVFDVARAKFLHHLEGHFMPVRSLVYSPIDPRVLFSASDDAHVHMYDSEGKSLITAMS
GHASWVLSVDASPDGAAIATGSSDRTVRLWDLNMRAAVQTMSNHSDQVWAVAFRPPGGTG
DRNGRLASVSDDKSISLYGYS
NT seq 966 nt   +upstreamnt  +downstreamnt
atgaaacttgcaggtctacaatccatcgagaacgctcacgacgagtcagtatgggcagcg
acatgggtccccgccacccagacccgacaggctctccttctgaccggttcacttgacgag
accgtgaagctatggagatccgacgagcttaacctagagcgaaccaacaccggacactgc
ctcggcgtcgtttctgtggcggcccatccttcaggtgttatcgccgcgtccgcttcgctt
gatagctttgttagagtcttcgatgtggacacaaatgctaccattgcaactctcgaatct
ccaccctcagaagtttggcaaatgcagtttgaccccaagggtaccactcttgcagttgct
ggtgggggtagtgcatcagtcaatctttgggacactgctacatggaagcagattgcctct
ctttctgttccccgtccagaaggtcccaagccttccgataagaatagcagcaagaagttt
gtcttatcagttgcgtggagccctgacgggaaacgacttgcttgtggctccatggatggc
actatttctgtttttgatgtagcccgagctaaatttttacaccacctcgaaggccatttc
atgcctgtgcgttctcttgtttattctcctattgatcctcgcgtgcttttttccgcatca
gatgatgctcatgtgcacatgtatgattccgaaggcaaaagtctcattacagcaatgtca
ggtcatgcaagctgggtattgagtgttgatgcaagccctgatggagcagctattgcaact
ggttcaagcgatagaactgtaaggctatgggatcttaacatgagggctgctgtgcagaca
atgagcaatcattcagaccaggtttgggcggtagcatttcgaccaccgggaggaactggc
gaccgtaatggtcgccttgctagtgtgtctgatgacaaaagcatctctctctatggttac
tcctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   RefGene (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (21)   

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