KEGG   Ricinus communis (castor bean): 8273404
Entry
8273404           CDS       T01087                                 
Name
(RefSeq) plant-specific TFIIB-related protein 1 isoform X1
  KO
K03124  transcription initiation factor TFIIB
Organism
rcu  Ricinus communis (castor bean)
Pathway
rcu03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:rcu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    8273404
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rcu03021]
    8273404
Transcription machinery [BR:rcu03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIB
     8273404
 Prokaryotic type
  Archaeal type
    TFB
     8273404
SSDB
Motif
Pfam: TFIIB Cyclin_C TF_Zn_Ribbon HTH_Mga
Other DBs
NCBI-GeneID: 8273404
NCBI-ProteinID: XP_002521582
UniProt: B9S6G3
Position
5:191937..196373
AA seq 511 aa
MKCPYCPAAQARCATSTSGRSILECTSCGRVVEERQFQQYHVFHNRAQDNPLSLVTSDLP
IIQPQGEGDDEDPFEPTGFITVFSTWSLEPNPLSLRSSLSFSGHLAELERTLELTASASN
SNSSTVVVDNLRAYMQIIDVASILGLDCDISDHAFQLFRDCCSATCLRNRSVEALATAAL
VQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLL
QLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTE
VTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTVITSGRSSAPRVDPVEVTSPPVDKD
KQPDNKSNKTNNVLARAKEDIESNGNSRGSRGPAWQNFRQPWLQFGASGVTTSGEKNLNG
NELQGSCQEFEEKVDKQIIEKELTGASRPNQFSNPPASGMSTISITWPFRSAPASGPSPI
VQPPPKLAPGYAELKGISIQNGSSNNANTEK
NT seq 1536 nt   +upstreamnt  +downstreamnt
atgaaatgtccgtactgcccggcggcgcaggcgaggtgcgccacgtcaacgagcggccgg
tcaatattggagtgtacatcctgcgggagagtggtggaagaacgtcaattccaacaatac
cacgttttccataatagggcacaagacaaccctctaagcctggtgacttcggatctccca
atcatccagccccaaggagaaggagacgacgaggacccgtttgagcccacgggcttcatc
actgttttctccacttggtctcttgaacccaatcctctctccctccgttcctctctctca
ttttcagggcacctcgctgagcttgaacgaacccttgaattaactgcctcagcgtcgaac
tcgaattcgtccactgtggttgtcgataatctgagagcttatatgcagattatcgatgtg
gcttcgatcttggggttggattgtgatatttctgatcatgcgtttcagttgtttagagac
tgctgctccgctacttgcttgaggaaccgcagcgttgaagctcttgccactgctgctctt
gttcaggctattagagaggcccaggagcccagaacccttcaggaaatctcaattgctgcc
aatgttcctcagaaggagattggaaagtacattaagatactgggagaagctctgcagctg
agtcagcccattaatagcaattccatttcagttcatatgcctagattctgcaccctcctc
caattaaacaaatcggctcaggaattggcgactcatattggagaagtagttatcaacaaa
tgcttctgtactcgcaggaatcccattagcatctctgcagctgctatatatttggcatgc
caattagaagacaagcgaaagacgcaggcagaaatttgtaaggtgacaggtctgactgag
gtcaccctcagaaaagtctacaaggaactgttggaaaactgggatgatctacttccatca
aattatactcctgctgtccctcctgagaaagcatttcctactacagtgatcacctcaggc
cgttcatctgcacctagagttgatccggttgaagtaacatctccccctgtggacaaagac
aaacagccagataacaaatcaaacaaaacaaacaatgtgttggccagggccaaagaggac
attgaaagcaatggtaattctcgggggagccgtggcccagcatggcagaatttcaggcag
ccgtggcttcagtttggagcttctggggtgacaacatcaggggagaaaaatctgaatggg
aacgaattgcagggtagctgtcaagagtttgaagagaaggtagataagcagataatagaa
aaagagttgacaggtgcatcgaggccaaaccaattttcaaaccctccagcttcaggaatg
agtactatcagcatcacctggccttttcggtcagcacctgcatcaggaccttctccaatt
gtacagccaccacccaagttagcaccaggttatgctgagcttaaaggtattagcattcag
aatggtagtagtaataatgctaacacggagaagtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (4)   
   Pfam (4)   
All databases (23)   

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