KEGG   Roseobacter denitrificans: RD1_4125
Entry
RD1_4125          CDS       T00376                                 
Name
(GenBank) VCBS repeat domain protein
Organism
rde  Roseobacter denitrificans
SSDB
Motif
Pfam: Big_9 Peptidase_M10_C Cadherin_4 H_lectin Cadherin_5 HemolysinCabind Peptidase_M66 Reprolysin_4 Peptidase_M57 Reprolysin_5 Reprolysin_3 Peptidase_M10 Metallopep
Other DBs
NCBI-ProteinID: ABG33566
RoseoBase: RD1_4125
UniProt: Q160M7
Position
3993369..3997274
AA seq 1301 aa
MSENVIKTGTLGQSVLAFENSLGTYGQTLPLASSLSDAPPAAADNVGGDATPAVSFTPGL
FGARETEDTIPFVEINHLTGCACIGCGGMPPEDLVLKRAIAANDPGNELGTDNLSAPSQL
SDLADFLTTDFWSQFGTVPREFNLTDSGLNPKSGVLHYNVTGFSNVNRAGTDTNGLTAPR
ADLVRDVMDVFGEVLGISFVETSSSDASFTDIFFKDTDAGRAYANSTGFSAGIQYSWINI
GQDWSGGTSTYNDYTLQTIFHEVGHALGLGHQGLYNGSGSFPGDADFDNDSWQATMMSYF
SQNENTTIPASFAFLQTPMAVDWIALQDIYGDQSFGGTNFGITNAFLGDTVYGFNTNISA
STSNIWAEFATYANRTASTIVDAGGIDTLDFSGYSANQVINLTPTSQFATAPSISNIGGL
TGNLTLAEGTIIENAIGGSGSDTFFGNDASNVFRGNGGNDTFNDSLGDDTYYGGAGTDTV
DFLGLFSNYSFSISGTFLSVINVAMDLVENTVEFLSFDDQTFSFQNILDGLGSNLAPVAS
NDAFSTDEASPLAAASILANDSDGDGDPLSVATVNNEAANVGNQITLASGALLTVDPNGT
FDYDPNGAFDGLTEGQSATDSFTYTAADESDQSNTATVTITVNGVDDSPAAAPIGQSGVA
TVSQADPDQWHTVSFATAIADAVVVMGPASDFDDAPLSTRVRNVTDTGFEFQIDEWDYLD
GVHASESIGWLAISEGSHTLSSGETIVAATASVGTGLETLSFGETLNNAVVLAEVTSLNE
ASAVTTRIRNVTEQGFQTQITEEEAGGAHVDETVSWIAIETGQNANFDAFITPDEVNETA
ARYDFNADFVTAPVVLADMQSTDGADTSTTRLAAVDATGVSLFVEEEQSQDTEIGHTDET
LGVVALKGGLIFVNDPPNTAPVAQNDTATVTEDVALSLDVLANDVDADGDVLALSGIEGQ
PIAIGQTITLASGARVKWDTDQTLTYDQNGAFDALDTGQTATDQFVYSVTDADGAVSSAS
VTVTINGMDEPLLTEAIGQSGVASVAQTEPDQWHSVAFDTQIDNAVVVLGPATSNDAQEL
TTRVRNVTDNGFEFQIDEWDYLDGVHGVEDIGWLAIAEGSHTLSNGQTIVASIASVGVGF
AAVAFGETLDDAIVFAETTTVNDAAALATRIRSVTDQGFEVQIEEEEAGGAHVAETVSWI
AIETGASGGLEAVRTGDQLDERADSFVFTQPFTETPVFIADMQTTDGVDTATLRLSEIDA
NGVSMFVQEERSADTEVDHTNEVAGYLALQDGLIYLDSFMA
NT seq 3906 nt   +upstreamnt  +downstreamnt
atgagtgaaaatgtcataaaaaccggcaccttgggccagagcgttctggcttttgaaaac
agtctgggcacctatggccagacgttgccactggcgtcgtcgctttccgacgcgcccccc
gcagccgcggacaatgtggggggtgatgccacgccggctgtgtctttcacgcccggcctg
ttcggggcgcgcgaaacagaagacacgatcccttttgtcgagatcaaccatctgaccggg
tgcgcttgtatcggctgcggcggcatgccccccgaagacctcgttctcaaaagagccatc
gccgcgaatgatccgggaaatgagcttgggacagacaatttgtccgccccttcacagctg
agcgatctggcggattttctgacgactgatttctggagccaattcggcaccgtcccgcgc
gagttcaatctgacggattcaggtctcaacccaaagagcggcgtgttgcactacaacgtc
accgggttttcgaatgtgaaccgtgctggcacggacacaaatgggctcaccgcgccgcgc
gccgatctcgtgcgcgatgtcatggatgtctttggtgaggtgctgggcatctcatttgtc
gagacgagttcctcggacgccagtttcacggatatcttcttcaaggacaccgacgcaggt
cgcgcctacgcaaattcgaccgggttttctgcgggcattcaatattcatggatcaacatc
ggacaagactggtccgggggtacgtcgacctacaacgactatacactgcagacgattttc
cacgaagtgggccatgccctgggattggggcatcagggcctctacaatggcagcggttca
tttccgggtgatgcggattttgacaatgacagctggcaggcgacgatgatgtcctatttc
agccagaacgaaaacaccacgatccccgccagttttgcctttcttcagacgccaatggcc
gtggattggatcgccttgcaggacatatacggcgatcagagctttggcggcacgaatttt
ggcatcaccaacgcgtttctgggcgatacggtctatgggttcaacaccaatatctccgcc
agcacgtcgaacatctgggccgagtttgccacctatgcaaacagaaccgcctcaacgatt
gtggatgcaggcggcatcgacacccttgatttcagcgggtattccgcaaaccaagtgatt
aacctgacccctaccagccagttcgcgacagcaccctctatctccaacatcggtggtctg
acgggcaatctgacgctggccgagggcacgatcatcgaaaacgccatcggtgggtcggga
tcggatacgttttttggcaatgacgcctcgaatgtgttcaggggcaatgggggtaacgac
acctttaacgacagtctcggggatgacacctattacggcggcgctggcaccgacacggtc
gattttctcggtctgttttcaaactattccttcagcatcagcggcacattcctttccgtg
atcaatgtcgcgatggaccttgtggaaaacaccgttgaattcctcagctttgatgatcag
accttcagttttcagaacattctggatgggctgggcagcaatttggcacccgttgcgagc
aacgatgccttttcaaccgacgaggccagcccgcttgcagcggccagtattctggccaat
gacagcgacggcgatggcgacccgctcagcgtcgccaccgtgaacaacgaagccgccaat
gtcggcaaccagatcaccctcgcctctggcgcattgctgacagtcgatccgaatgggacg
ttcgattatgaccccaacggcgcctttgatggccttaccgaggggcaatcggccaccgac
agtttcacctataccgcagccgatgagagtgaccaatcgaacacggccacggtgacgatc
acggtaaatggcgtggatgacagccctgcggcggcacccatcgggcaaagtggcgtggcc
accgtgtcgcaagccgaccctgatcaatggcacacggtcagctttgcaacggcaatcgcg
gacgctgtcgtcgtaatgggcccggcaagtgactttgacgacgccccgctcagcacgcgc
gtgcgcaatgtcacggacacaggtttcgagttccagatcgacgaatgggactatctggat
ggagtccacgcaagcgagagcatcggctggctggccatatccgagggatcccatacgctc
agcagcggcgagacgatcgtcgccgcgaccgcatccgttggcaccggccttgaaacgctc
agctttggtgaaacgctgaacaacgccgtggttctggccgaggttacgtcactcaatgag
gccagtgccgtgaccacccgcatccgcaacgtcaccgagcagggatttcagacgcagatc
accgaagaagaagcaggcggcgcgcatgtggatgaaaccgtgtcatggatcgcgattgaa
acgggtcaaaacgcgaatttcgatgcgttcatcaccccggatgaggtgaacgagacagcg
gcgcgctacgatttcaacgccgactttgtgaccgcgccggtggttctggccgacatgcaa
tcaaccgatggcgcagatacatcaaccacgcgcctcgccgctgttgatgccacgggcgtc
tctctctttgtagaggaagagcaatctcaagacaccgaaattggccatacggatgaaacc
cttggtgtcgtggcgctcaaaggtggcctgatctttgtcaacgacccgccaaacaccgca
cccgtggcgcagaacgataccgcaaccgtgaccgaggacgtggcgctgtcgctggatgtt
ctggccaatgacgtggacgcagatggtgatgtgttggctttgtccggcatcgaaggtcag
ccaattgccattggtcagacgattacgcttgcttcgggcgcacgcgtcaaatgggatacc
gaccagaccctcacctatgatcagaacggcgcatttgatgcattggatacagggcagacc
gcgacggatcagtttgtttattccgtcacggatgcggatggggccgtatccagcgcttcc
gtgacagtcacgatcaacggaatggacgaaccgttgctgacggaagccatcgggcaaagc
ggggtcgcgtctgttgcccaaacggaaccagatcagtggcacagcgtggcgtttgacacg
caaatcgacaatgccgttgtggtgctgggcccggcgaccagtaacgacgcgcaagaattg
accacgcgtgtgcgtaatgtcaccgacaacggtttcgagtttcagatcgacgaatgggat
tatctggacggggtccatggcgtggaggatatcggctggctggccattgccgaaggctcg
cacaccctcagcaatggccagaccattgtcgcgtcaatagcctcggttggcgttgggttc
gccgctgtcgcctttggggaaacgctggacgatgccattgtctttgcggaaaccaccacg
gtgaatgacgccgcagcccttgccacgcgcatccgcagcgttaccgatcaggggttcgaa
gttcagatcgaagaggaggaagcgggaggcgcccatgtcgccgagaccgtctcctggatc
gccattgaaaccggcgcaagcggcgggttggaagccgtgcgcacaggcgatcagcttgat
gaacgcgccgacagctttgtgttcacgcaaccctttaccgagacgcccgtctttatcgca
gacatgcaaaccacagacggcgttgatacggccacgctgcgcctgagcgagatcgacgca
aacggtgtgtcgatgtttgtgcaggaagaacggtctgcggacactgaagtggaccataca
aacgaggttgccgggtatctcgcgctgcaagacgggttgatctatctggacagtttcatg
gcctga

  All links  
Genome (1)   
   KEGG GENOME (1)   
Gene (215)   
   RefGene (212)   
   NCBI-PROTEINID (1)   
   OC (1)   
   ROSEOBASE (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (230)   

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