KEGG   Roseateles depolymerans: RD2015_1221
Entry
RD2015_1221       CDS       T04166                                 
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
  KO
K01928  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
Organism
rdp  Roseateles depolymerans
Pathway
rdp00300  Lysine biosynthesis
rdp00550  Peptidoglycan biosynthesis
rdp01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:rdp00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00300 Lysine biosynthesis
    RD2015_1221
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    RD2015_1221
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:rdp01011]
    RD2015_1221
Enzymes [BR:rdp01000]
 6. Ligases
  6.3  Forming carbon-nitrogen bonds
   6.3.2  Acid-D-amino-acid ligases (peptide synthases)
    6.3.2.13  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
     RD2015_1221
Peptidoglycan biosynthesis and degradation proteins [BR:rdp01011]
 Precursor biosynthesis
  Amino acid ligase
   RD2015_1221
SSDB
Motif
Pfam: Mur_ligase_M Mur_ligase_C Mur_ligase MFS18
Other DBs
NCBI-ProteinID: ALV05712
UniProt: A0A0U3NB01
Position
1400889..1402406
AA seq 505 aa
MLMHLKSPEAAARWLQEWTPSGQLRTDSRLVGAGDAFIAWPGYAKDARQFVAGALAAGAA
TCLVEDQGVAEYGFVDARIASLPDLKARCGQIASAFYGEPSSQLSVLAVTGTNGKTSSAW
WIAQALTLLGSRCGVVGTLGVGQPPVPGAITHSSIEATGLTTPDPVRLQEAFRRMRDDGF
GACAIEASSIGIEEHRLTGTRIQVALFTNFTQDHLDYHGSMDAYWAAKRRLFSWPGLQAA
VLNIDDAKGAELAAELTAGAASGLDVWTYGLNRSDARLWAENLRHEAQGLAFTLREGEQS
VAVQTGLIGDYNVANLLGVMAGLRALGHGLDDIARVAAQVTPVPGRMQRVGNGRELPQLV
VDYAHTPDALEKALQALAPLAAARGGELRVVFGCGGNRDPGKRPLMGAIAARLARHVVLT
SDNPRDEDPARILADIEAGLPASAQRLVLADRAEAIATAVRNAGARDVVLIAGKGHEDYQ
EIRGERRPFSDVQAARAALIERAGL
NT seq 1518 nt   +upstreamnt  +downstreamnt
atgttgatgcacctcaaatctcccgaagcagccgcccgctggctgcaggaatggaccccc
agcggccagctgcgcactgacagccggctggtcggcgcgggcgacgccttcatcgcctgg
cccggctacgccaaggacgcgcgccaattcgtggccggcgcgctggcggccggcgcggcc
acctgcctggtggaagaccagggcgtggccgagtacgggtttgtggatgcgcgcattgcc
tcgctgccggacctcaaggcccgttgcggccagattgcctccgcgttctacggcgagccc
agcagccagctgagcgtcctggccgtgaccggcaccaatggcaagacgtccagcgcctgg
tggatcgcccaggcgctgaccctgctggggtcgcgctgcggtgtggtgggcacgctcggc
gtcggccaaccgcccgttccgggcgcgatcacccacagctcgatcgaggccacgggcctg
accacgcccgacccggtgcggctgcaggaggcgtttcgccgcatgcgggatgacggcttc
ggcgcctgcgccatcgaggcttcgtccatcggcatcgaggaacaccgcctgacgggcacc
cgcatccaggtggcgctgttcaccaatttcacgcaggaccacctggactatcacggcagc
atggacgcctactgggctgccaagcgccgtctgttcagctggcccggcctgcaggccgcg
gtgctgaacatcgacgatgccaagggcgccgaattggctgcggaactcaccgcgggcgct
gcctcgggcctggacgtgtggacctacggcctgaaccgcagcgacgcccgcctgtgggcg
gagaacctgcgccatgaggcccagggcctggcgttcacgctgcgcgaaggcgagcagtcg
gtggccgtgcagaccggcctgatcggcgactacaacgtcgccaacctgttgggcgtgatg
gccggcctgcgcgcattgggccatggcctggacgacatcgcccgcgtggcggcccaggtg
acgccggtgcccggccgcatgcagcgcgtgggcaatggccgtgaactgccgcaactggtg
gtggactatgcccacacccccgacgcgctcgaaaaggcgctgcaggcgctggccccgttg
gcggcggcacgcggcggtgagctgcgcgtggtgtttggctgcggcggcaaccgggatccc
ggcaagcgtcccctgatgggggccattgcagcgcgactggcgcggcatgtcgtgctgacc
agcgacaacccgcgggatgaagatcccgcccgcatcctggccgacatcgaagccggcctg
cctgcttcagcacagcgcctggtgctggcggaccgcgccgaagccatcgccaccgccgtg
cgcaacgcaggcgcccgtgatgtggtgctgatcgccggcaagggccatgaggactaccag
gagatccgcggcgagcgccgtccgttctccgatgtgcaggctgcccgtgcggcgctgatc
gaaagggccggcctgtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (32)   

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