KEGG   Roseateles depolymerans: RD2015_4163
Entry
RD2015_4163       CDS       T04166                                 
Name
(GenBank) signal recognition particle protein Srp54
  KO
K03106  signal recognition particle subunit SRP54 [EC:3.6.5.4]
Organism
rdp  Roseateles depolymerans
Pathway
rdp02024  Quorum sensing
rdp03060  Protein export
rdp03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:rdp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03060 Protein export
    RD2015_4163
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    RD2015_4163
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    RD2015_4163
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:rdp02044]
    RD2015_4163
Enzymes [BR:rdp01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.5  Acting on GTP to facilitate cellular and subcellular movement
    3.6.5.4  signal-recognition-particle GTPase
     RD2015_4163
Secretion system [BR:rdp02044]
 Sec (secretion) system
  Prokaryotic Sec-SRP core components
   RD2015_4163
  Eukaryotic Sec-SRP protein
   RD2015_4163
SSDB
Motif
Pfam: SRP54 SRP_SPB SRP54_N CbiA Zeta_toxin AAA_30 AAA_22 AAA_16 AAA_31 AAA_19 APS_kinase AAA_18 AAA_33 cobW Rad17 ResIII YqeC AAA_14 Thymidylate_kin Helicase_RecD ParA nSTAND3 AAA_17 KTI12 ArsA_ATPase DO-GTPase1 TsaE GTP_EFTU VirC1 AAA_24
Other DBs
NCBI-ProteinID: ALV08612
UniProt: A0A0U3N366
Position
4842435..4843838
AA seq 467 aa
MASTLTDRLSRLVKTMRGQARITEDNVQDMLREVRMALLEADVALPVVRDFVARVKEKAL
GAEVVGSLSPGQALVGIVHKELAATMGEGIADINLAAQPPAIILMAGLQGAGKTTTTAKL
AKHLIEKRKKKVLTVSADVYRPAAIEQLKTVTAQAGAEWFPSAPDQKPHDIALAAVDHAR
RHFFDVLLVDTAGRLAIDEALMAEIRDLHATLKPVETLFVVDAMQGQDAINTAKAFKEAL
PLTGIVLTKLDGDSRGGAALSVRQITGAPIKFAGVSEKIDGLEVFDAERHAGRVLGMGDI
VALVEEVQKGVDVEAAQKLAEKLKSGDGFDLNDFLAQISQMKKMGGLSGLMDKLPTQMTA
KAGAADMDKAERDMKRMEGILNAMTAKERRQPSLLMDGKSKASRKRRIAAGAGVQIQEVN
RLLNQFDQMQGMMKKMKGGGLMKMMKKLGGMKGMKGMMGGGGGGMPF
NT seq 1404 nt   +upstreamnt  +downstreamnt
atggcatccactctcaccgaccgcctgagtcgcctcgtcaagacgatgcgcgggcaggcc
cgcatcaccgaagacaacgtgcaggacatgttgcgggaggtgcgcatggccctcctggag
gcggacgtggccctgcccgtcgttcgcgacttcgtcgcccgcgtcaaggaaaaagcgctg
ggcgccgaggtggtgggctcgctgtcccccggccaggcgctggtgggcatcgtccacaag
gaactcgccgccaccatgggcgagggcattgcggacatcaacctggccgcccagccgccc
gccatcatcctgatggccggcctgcagggcgccggcaagacgaccaccaccgccaagctg
gccaagcacctgatcgaaaagcgcaagaagaaggtgctgacggtctcggcggacgtgtat
cgcccggcggccattgaacagctcaagacggtcaccgcccaggccggcgccgagtggttc
ccgtctgcgccggaccagaaaccgcatgacatcgcgctggccgccgtggaccatgcccgc
cgtcatttctttgatgtgctgctggtggacacggccggccgcctggccatcgacgaagcc
ttgatggcggaaatccgtgacctgcacgccacactcaagccggtcgaaaccctgttcgtg
gtggacgccatgcagggtcaggacgcgatcaacaccgccaaggccttcaaggaggccctg
ccgctgaccggtatcgtgctgaccaagctggacggcgactcgcgcggtggtgcggcgctg
tcggtgcggcagatcactggcgcgcccatcaagttcgcgggcgtgtcggagaagatcgac
ggcctggaagtcttcgatgcggagcgccacgccggccgcgtgctgggcatgggcgacatc
gtggccctggtggaggaagtccagaagggcgtggacgtcgaggcggcgcagaagctggcc
gagaagctcaagtccggagacggctttgacctgaacgacttcctggcccagatttcccag
atgaagaagatggggggcctgtccggcctgatggacaagctgcccacccagatgacggcc
aaggccggcgccgccgacatggacaaggccgaacgcgacatgaagcgcatggagggcatc
cttaatgcgatgaccgccaaggagcgccgccagccgtcgctgctgatggacggcaagtcc
aaggccagccgcaagcgccggattgccgccggtgccggcgtccagatccaggaagtcaac
cgcctgctcaatcagtttgaccagatgcaggggatgatgaagaagatgaagggcggcggc
ctgatgaagatgatgaagaagctcggcggcatgaagggcatgaaaggcatgatgggcggc
gggggcggcggcatgccgttctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (30)   
   Pfam (30)   
All databases (53)   

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