LOCUS NC_003131 70305 bp DNA circular CON 04-JUN-2023
DEFINITION Yersinia pestis CO92 plasmid pCD1, complete sequence.
ACCESSION NC_003131
VERSION NC_003131.1
DBLINK BioProject: PRJNA224116
BioSample: SAMEA1705942
Assembly: GCF_000009065.1
KEYWORDS RefSeq; chaperone; cytotoxic effector; IS100; IS1616; IS1617; lcr;
low-calcium response; syc; targeted effector; transposase; type III
secretion; V antigen; virulence; ylp; yop; ysc.
SOURCE Yersinia pestis CO92
ORGANISM Yersinia pestis CO92
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
Yersiniaceae; Yersinia.
REFERENCE 1 (bases 1 to 70305)
AUTHORS Parkhill,J., Wren,B.W., Thomson,N.R., Titball,R.W., Holden,M.T.,
Prentice,M.B., Sebaihia,M., James,K.D., Churcher,C., Mungall,K.L.,
Baker,S., Basham,D., Bentley,S.D., Brooks,K., Cerdeno-Tarraga,A.M.,
Chillingworth,T., Cronin,A., Davies,R.M., Davis,P., Dougan,G.,
Feltwell,T., Hamlin,N., Holroyd,S., Jagels,K., Karlyshev,A.V.,
Leather,S., Moule,S., Oyston,P.C., Quail,M., Rutherford,K.,
Simmonds,M., Skelton,J., Stevens,K., Whitehead,S. and Barrell,B.G.
TITLE Genome sequence of Yersinia pestis, the causative agent of plague
JOURNAL Nature 413 (6855), 523-527 (2001)
PUBMED 11586360
REFERENCE 2 (bases 1 to 70305)
AUTHORS James,K.D., Parkhill,J., Barrell,B.G. and Rajandream,M.A.
TITLE Direct Submission
JOURNAL Submitted (03-SEP-1999) Yersinia pestis sequencing project, The
Wellcome Trust Sanger Institute, Genome Campus, Hinxton, Cambridge
CB10 1SA E-mail:parkhill@sanger.ac.uk DNA supplied by Dr. Andrey
Karlyshev and Prof. Brendan Wren, [3]. Department of Infectious and
Tropical Diseases, London School of Hygiene and Tropical Medicine,
Keppel Street, London WC1E 7HT
COMMENT REFSEQ INFORMATION: The reference sequence is identical to
AL117189.1.
Notes:
Details of Y. pestis sequencing at the Sanger Centre are available
on the World Wide Web.
(URL, http://www.sanger.ac.uk/Projects/Y_pestis/).
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Date :: 06/04/2023 08:56:06
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.5
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA
Genes (total) :: 4,401
CDSs (total) :: 4,301
Genes (coding) :: 4,108
CDSs (with protein) :: 4,108
Genes (RNA) :: 100
rRNAs :: 7, 6, 6 (5S, 16S, 23S)
complete rRNAs :: 7, 6, 6 (5S, 16S, 23S)
tRNAs :: 69
ncRNAs :: 12
Pseudo Genes (total) :: 193
CDSs (without protein) :: 193
Pseudo Genes (ambiguous residues) :: 0 of 193
Pseudo Genes (frameshifted) :: 81 of 193
Pseudo Genes (incomplete) :: 134 of 193
Pseudo Genes (internal stop) :: 25 of 193
Pseudo Genes (multiple problems) :: 39 of 193
CRISPR Arrays :: 3
##Genome-Annotation-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..70305
/organism="Yersinia pestis CO92"
/mol_type="genomic DNA"
/strain="CO-92"
/db_xref="taxon:214092"
/plasmid="pCD1"
/note="biovar:Orientalis"
gene 88..1110
/gene="istA"
/locus_tag="YPO_RS00050"
/old_locus_tag="YPCD1.01"
CDS 88..1110
/gene="istA"
/locus_tag="YPO_RS00050"
/old_locus_tag="YPCD1.01"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000627495.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="IS21-like element IS100 family transposase"
/protein_id="WP_000255944.1"
/translation="MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEP
PKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIR
SLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRMLYIEFTDNMR
YDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFS
PRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVA
NQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHLDENLVNFDKHPLHHPLSIYDS
FCRGVA"
gene 1107..1889
/gene="istB"
/locus_tag="YPO_RS00055"
/old_locus_tag="YPCD1.02"
CDS 1107..1889
/gene="istB"
/locus_tag="YPO_RS00055"
/old_locus_tag="YPCD1.02"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858162.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="IS21-like element IS100kyp family helper ATPase
IstB"
/protein_id="WP_001317493.1"
/translation="MMMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFL
EHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIER
NENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQ
RGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGD
AALTSAMLDRILHHSHVVQIKGESYRLRQKRKAGVIAEANPE"
gene complement(<1956..2204)
/locus_tag="YPO_RS00060"
/old_locus_tag="YPCD1.03c"
/pseudo
CDS complement(<1956..2204)
/locus_tag="YPO_RS00060"
/old_locus_tag="YPCD1.03c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000952428.1"
/note="incomplete; partial in the middle of a contig;
missing C-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS21 family transposase"
gene <2307..2951
/locus_tag="YPO_RS00065"
/old_locus_tag="YPCD1.04"
/pseudo
CDS <2307..2951
/locus_tag="YPO_RS00065"
/old_locus_tag="YPCD1.04"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076611475.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS3 family transposase"
gene complement(3014..3406)
/gene="sycE"
/locus_tag="YPO_RS00070"
/old_locus_tag="YPCD1.05c"
/gene_synonym="yerA"
CDS complement(3014..3406)
/gene="sycE"
/locus_tag="YPO_RS00070"
/old_locus_tag="YPCD1.05c"
/gene_synonym="yerA"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002213403.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system chaperone SycE/YerA"
/protein_id="WP_002213403.1"
/translation="MYSFEQAITQLFQQLSLSIPDTIEPVIGVKVGEFACHITEHPVG
QILMFTLPSLDNNDEKETLLSHNIFSQDILKPILSWDEVGGHPVLWNRQPLNSLDNNS
LYTQLEMLVQGAERLQTSSLISPPRSFS"
gene 3600..4259
/gene="yopE"
/locus_tag="YPO_RS00075"
/old_locus_tag="YPCD1.06"
CDS 3600..4259
/gene="yopE"
/locus_tag="YPO_RS00075"
/old_locus_tag="YPCD1.06"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002229754.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system effector GTPase
activator YopE"
/protein_id="WP_002229754.1"
/translation="MKISSFISTSLPLPTSVSGSSSVGEMSGRSVSQQTSDQYANNLA
GRTESPQGSSLASRIIERLSSVAHSVIGFIQRMFSEGSHKPVVTPAPTPAQMPSPTSF
SDSIKQLAAETLPKYMQQLNSLDAEMLQKNHDQFATGSGPLRGSITQCQGLMQFCGGE
LQAEASAILNTPVCGIPFSQWGTIGGAASAYVASGVDLTQAANEIKGLAQQMQKLLSL
M"
gene complement(4399..4698)
/locus_tag="YPO_RS00080"
/old_locus_tag="YPCD1.08c"
CDS complement(4399..4698)
/locus_tag="YPO_RS00080"
/old_locus_tag="YPCD1.08c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002213360.1"
/GO_function="GO:0008657 - DNA topoisomerase type II
(double strand cut, ATP-hydrolyzing) inhibitor activity
[Evidence IEA]"
/GO_function="GO:0042803 - protein homodimerization
activity [Evidence IEA]"
/GO_process="GO:0030541 - plasmid partitioning [Evidence
IEA]"
/GO_process="GO:0051290 - protein heterotetramerization
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type II toxin-antitoxin system RelE/ParE family
toxin"
/protein_id="WP_002213360.1"
/translation="MYKLSELADEDIYNIASYTIRHFGVTQAKLYHENLAKVFELLAK
NPELGAECNWICSDIRRFQYKKHGIYYITLSNDILISRVLHQSIDIDVQDFPEHE"
gene complement(4691..4933)
/locus_tag="YPO_RS00085"
/old_locus_tag="YPCD1.09c"
CDS complement(4691..4933)
/locus_tag="YPO_RS00085"
/old_locus_tag="YPCD1.09c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002224342.1"
/GO_process="GO:0051983 - regulation of chromosome
segregation [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type II toxin-antitoxin system ParD family
antitoxin"
/protein_id="WP_002224342.1"
/translation="MAHVTSVTLGEHLTGFVGEMIQSGRYGNISEVLRDALRLMEARE
QRVQHVRDMVLAGTNVPVSHRLMDEIFSAAVKDTSV"
gene complement(<5099..5391)
/locus_tag="YPO_RS00090"
/old_locus_tag="YPCD1.10c"
/pseudo
CDS complement(<5099..5391)
/locus_tag="YPO_RS00090"
/old_locus_tag="YPCD1.10c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012606398.1"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="transposase"
gene 5477..5650
/locus_tag="YPO_RS00095"
/old_locus_tag="YPCD1.11"
CDS 5477..5650
/locus_tag="YPO_RS00095"
/old_locus_tag="YPCD1.11"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_002213357.1"
/translation="MKSPYPTWRDGYRYQKADIMLNDVGSRPGQIDMFDETPPHANSK
HLMQVVDASIALG"
gene complement(5799..6035)
/locus_tag="YPO_RS00100"
CDS complement(5799..6035)
/locus_tag="YPO_RS00100"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011191368.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_154020274.1"
/translation="MGPWSQLLTLALDIQVGPWSQLPTLALDIQVGPWSQLPTLTLDI
QVGPWSQLPTLALDIQVGPWSQLLTLALNILVEM"
gene complement(6195..7160)
/locus_tag="YPO_RS00105"
/old_locus_tag="YPCD1.12c"
CDS complement(6195..7160)
/locus_tag="YPO_RS00105"
/old_locus_tag="YPCD1.12c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002213354.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="ParB/RepB/Spo0J family plasmid partition
protein"
/protein_id="WP_002213354.1"
/translation="MMKRSPVLRNAPSINFDDAKPAISNAEPSVSAPAVSQLASRVSG
MKGNTIVLPVCGRNVAFTLKVIAAPDVESKTIVFSGNERNQALLSETSLDDLIPSFLT
SGQQIPAFAREHNGNIEVADGSRRRKAAILTGSDYKVLVGNLNDEQMLWLSQIANEYR
PTSAYERGLRYAQRLISEFEGNISKLAEAEHLSRKIIQRCIKTAGLPLKTIQLFANPN
ELSARSGEALSKAYENNVDTLKRVTHKIMKQKQEGRQFTTEELIVLLMPERKQPENIH
KKSFGKNIEAKYSKDNVSFYLKSVPESLVKQIEELLNTYAKEHSL"
gene complement(7157..8323)
/gene="sopA"
/locus_tag="YPO_RS00110"
/old_locus_tag="YPCD1.13c"
CDS complement(7157..8323)
/gene="sopA"
/locus_tag="YPO_RS00110"
/old_locus_tag="YPCD1.13c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_010891239.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="plasmid-partitioning protein SopA"
/protein_id="WP_002220902.1"
/translation="MDLKSTLDRCIERGQFMTQEIAKSQFGNDSPAARTITRRWRITE
AAELVGVTPQTIRNYEDSGKLPPPDTAMIGRVEQRTGYSIQQINDMRDVFKTRLSKPK
GENPVVLAIAAHKGGAYKTSTSVHIAQWMALQGLRVLLIDATDPQATASLYHGYVPDL
HIHEEDTLLPYYLGQRDDAAYAIKPTCWPNLEVIPSCLAVHRIESEIYGLHDQGKLPV
APHLLLRAAIESVWDSYDVVVLDSAPNLGIGTINVVCAADVIVVPTPAELYDYVSTLQ
FFTMLRDLMSNIDLNGFEPDVRVLITKFSNAIGSQSQWMDDQIRNAWGGMVLKEVVRV
TDEVGKGQVRMRTVFEQAANQRSTPAAWRNAVSIWEPVCAEIFNRLVKPRWENA"
gene <8791..>9004
/locus_tag="YPO_RS21880"
/pseudo
CDS <8791..>9004
/locus_tag="YPO_RS21880"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076612308.1"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing N-terminus and C-terminus; Derived by
automated computational analysis using gene prediction
method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS481 family transposase"
gene complement(9083..10228)
/locus_tag="YPO_RS00115"
/old_locus_tag="YPCD1.14c"
/pseudo
CDS complement(9083..10228)
/locus_tag="YPO_RS00115"
/old_locus_tag="YPCD1.14c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_086558235.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="frameshifted; internal stop; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS3 family transposase"
gene complement(10335..11073)
/gene="traT"
/locus_tag="YPO_RS00120"
/old_locus_tag="YPCD1.17c"
/pseudo
CDS complement(10335..11073)
/gene="traT"
/locus_tag="YPO_RS00120"
/old_locus_tag="YPCD1.17c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001485398.1"
/note="frameshifted; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="conjugal transfer complement resistance protein
TraT"
gene complement(<11113..>11403)
/locus_tag="YPO_RS00125"
/pseudo
CDS complement(<11113..>11403)
/locus_tag="YPO_RS00125"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076611500.1"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing N-terminus and C-terminus; Derived by
automated computational analysis using gene prediction
method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS3 family transposase"
gene complement(11562..12110)
/gene="yopK"
/locus_tag="YPO_RS00130"
/old_locus_tag="YPCD1.19c"
/gene_synonym="yopQ"
CDS complement(11562..12110)
/gene="yopK"
/locus_tag="YPO_RS00130"
/old_locus_tag="YPCD1.19c"
/gene_synonym="yopQ"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002213007.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system effector YopK"
/protein_id="WP_002213007.1"
/translation="MFIKDTYNMRALCTALEQSAPDTIINTSKEENNSYYCATAHLLR
TDVCSLVNRVGIEPLKSGSILSTLEELWQAVGIVYRLYEWQHVSDIDTNFKKLPNNSD
FGLVFSVLDCDIEYVFIGKKDSEGNIEFYDPKNSLLIENDDIKKYLYDEDFHRFCIML
IISKSELEELSRESCDQECIMG"
gene 12610..13578
/gene="yopT"
/locus_tag="YPO_RS00135"
/old_locus_tag="YPCD1.20"
CDS 12610..13578
/gene="yopT"
/locus_tag="YPO_RS00135"
/old_locus_tag="YPCD1.20"
/EC_number="3.4.22.-"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002213006.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="T3SS effector cysteine protease YopT"
/protein_id="WP_002213006.1"
/translation="MNSIHGHYHIQLSNYSAGENLQSATLTEGVIGAHRVKVETALSH
SNLQKKLSATIKHNQSGRSMLDRKLTSDGKANQRSSFTFSMIMYRMIHFVLSTRVPAV
RESVANYGGNINFKFAQTKGAFLHKIIKHSDTASGVCEALCAHWIRSHAQGQSLFDQL
YVGGRKGKFQIDTLYSIKQLQIDGCKADVDQDEVTLDWFKKNGISERMIERHCLLRPV
DVTGTTESEGLDQLLNAILDTHGIGYGYKKIHLSGQMSAHAIAAYVNEKSGVTFFDPN
FGEFHFSDKEKFRKWFTNSFWGNSMYHYPLGVGQRFRVLTFDSKEV"
gene 13578..13976
/gene="sycT"
/locus_tag="YPO_RS00140"
/old_locus_tag="YPCD1.21"
CDS 13578..13976
/gene="sycT"
/locus_tag="YPO_RS00140"
/old_locus_tag="YPCD1.21"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002213004.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system chaperone SycT"
/protein_id="WP_002213004.1"
/translation="MQTTFTELMQQLFLKLGLNHQVNENDVYTFTFEVDGHIQVLIAC
YHQQWVQLFSELGADLPTNDNLFGEHWPAHVQGRLDGKPILWSQQSLVGLDIDEMQAW
LERFIDDIEQRKEPQNTKFQPNSTSPILFI"
gene <14382..14663
/locus_tag="YPO_RS00145"
/pseudo
CDS <14382..14663
/locus_tag="YPO_RS00145"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_086558335.1"
/note="internal stop; incomplete; partial in the middle of
a contig; missing N-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="DDE-type integrase/transposase/recombinase"
gene 14750..15100
/locus_tag="YPO_RS00150"
/old_locus_tag="YPCD1.23"
CDS 14750..15100
/locus_tag="YPO_RS00150"
/old_locus_tag="YPCD1.23"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002393889.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_002393889.1"
/translation="MSIKAILLYSYQEYGQHTDVFIQVKFNYGMIEYKFYVNKVKFDD
TPDRKLKTTIAHSSQLMGHNLTYEDYAMKKRLVIATALCAAFYAGMKVEHFLTVDACL
DAGGAMQNDIFCER"
gene complement(15628..>15846)
/locus_tag="YPO_RS00155"
/old_locus_tag="YPCD1.24c"
/pseudo
CDS complement(15628..>15846)
/locus_tag="YPO_RS00155"
/old_locus_tag="YPCD1.24c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_086558335.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="DDE-type integrase/transposase/recombinase"
gene <15976..16293
/locus_tag="YPO_RS00165"
/old_locus_tag="YPCD1.25"
/pseudo
CDS <15976..16293
/locus_tag="YPO_RS00165"
/old_locus_tag="YPCD1.25"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_005054087.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="transposase"
gene complement(16336..17565)
/gene="yopM"
/locus_tag="YPO_RS00170"
/old_locus_tag="YPCD1.26c"
CDS complement(16336..17565)
/gene="yopM"
/locus_tag="YPO_RS00170"
/old_locus_tag="YPCD1.26c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002229779.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system effector YopM"
/protein_id="WP_002229779.1"
/translation="MFINPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWS
EWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNS
LTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDV
DNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLE
SIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELP
QSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA
LPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSERVVDP
YEFAHETTDKLEDDVFE"
gene complement(17959..18168)
/locus_tag="YPO_RS00175"
/old_locus_tag="YPCD1.26n"
CDS complement(17959..18168)
/locus_tag="YPO_RS00175"
/old_locus_tag="YPCD1.26n"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_002229781.1"
/translation="MNSLSFHDNSIFCNKPKYSDAEVAQTLDTAQKHTLTVSKGVLDT
AKQYTNTVSSNTLDSANTYTNNKAD"
gene 18189..18826
/locus_tag="YPO_RS00180"
/old_locus_tag="YPCD1.26.1n"
/pseudo
CDS 18189..18826
/locus_tag="YPO_RS00180"
/old_locus_tag="YPCD1.26.1n"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012548890.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="frameshifted; internal stop; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS6 family transposase"
gene complement(19294..20214)
/gene="yopD"
/locus_tag="YPO_RS00185"
/old_locus_tag="YPCD1.28c"
CDS complement(19294..20214)
/gene="yopD"
/locus_tag="YPO_RS00185"
/old_locus_tag="YPCD1.28c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011117631.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system translocon subunit
YopD"
/protein_id="WP_002212987.1"
/translation="MTINIKTDSPIITTGSQLDAITTETVKQSGEIKKTEDTRHEAQA
IKSSEASLSRSQVPELIKPSQGINVALLSKSQGDLNGTLSILLLLLELARKAREMGLQ
QRDIENKATITAQKEQVAEMVSGAKLMIAMAVVSGIMAATSTVASAFSIAKEVKIVKQ
EQILNSNIAGREQLIDTKMQQMSNIGDKAVSREDIGRIWKPEQVADQNKLALLDKEFR
MTDSKANAFNAATQPLGQMANSAIQVHQGYSQAEVKEKEVNASIAANEKQKAEEAMNY
NDNFMKDVLRLIEQYVSSHTHAMKAAFGVV"
gene complement(20233..21438)
/gene="yopB"
/locus_tag="YPO_RS00190"
/old_locus_tag="YPCD1.29c"
CDS complement(20233..21438)
/gene="yopB"
/locus_tag="YPO_RS00190"
/old_locus_tag="YPCD1.29c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011117632.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system translocon subunit
YopB"
/protein_id="WP_002212985.1"
/translation="MSALITHDRSTPVTGSLLPYVETPAPAPLQTQQVAGELKDKNGG
VSSQGVQLPAPLAVVASQVTEGQQQEVTKLLESVTRGAAGSQLISNYVSVLTKFTLAS
PDTFEIELGKLVSNLEEVRKDIKIADIQRLHEQNMKKIEENQEKIKETEENAKQVKKS
GIASKIFGWLSAIASVIVGAIMVASGVGAVAGAMMVASGVIGMANMAVKQAAEDGLIS
QEAMKILGPILTAIEVALTVVSTVMTFGGSALKCLANIGAKLGANTASLVAKGAEFSA
KVAQISTGISNTVGSAVTKLGGSFAGLTMSHAIRTGSQATQVAVGVGSGITQTINNKK
QADLQHNNADLALNKADMAALQSIIDRLKEELSHLSESHQQVMELIFQMINAKGDMLH
NLAGRPHTV"
gene complement(21416..21922)
/gene="lcrH"
/locus_tag="YPO_RS00195"
/old_locus_tag="YPCD1.30c"
/gene_synonym="sycD"
CDS complement(21416..21922)
/gene="lcrH"
/locus_tag="YPO_RS00195"
/old_locus_tag="YPCD1.30c"
/gene_synonym="sycD"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011117633.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system chaperone SycD/LcrH"
/protein_id="WP_002222758.1"
/translation="MQQETTDTQEYQLAMESFLKGGGTIAMLNEISSDTLEQLYSLAF
NQYQSGKYEDAHKVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAIMDIK
EPRFPFHAAECLLQKGELAEAESGLFLAQELIADKTEFKELSTRVSSMLEAIKLKKEM
EHECVDNP"
gene complement(21935..22915)
/gene="lcrV"
/locus_tag="YPO_RS00200"
/old_locus_tag="YPCD1.31c"
CDS complement(21935..22915)
/gene="lcrV"
/locus_tag="YPO_RS00200"
/old_locus_tag="YPCD1.31c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002212981.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system needle tip protein
LcrV"
/protein_id="WP_002212981.1"
/translation="MIRAYEQNPQHFIEDLEKVRVEQLTGHGSSVLEELVQLVKDKNI
DISIKYDPRKDSEVFANRVITDDIELLKKILAYFLPEDAILKGGHYDNQLQNGIKRVK
EFLESSPNTQWELRAFMAVMHFSLTADRIDDDILKVIVDSMNHHGDARSKLREELAEL
TAELKIYSVIQAEINKHLSSSGTINIHDKSINLMDKNLYGYTDEEIFKASAEYKILEK
MPQTTIQVDGSEKKIVSIKDFLGSENKRTGALGNLKNSYSYNKDNNELSHFATTCSDK
SRPLNDLVSQKTTQLSDITSRFNSAIEALNRFIQKYDSVMQRLLDDTSGK"
gene complement(22917..23204)
/gene="lcrG"
/locus_tag="YPO_RS00205"
/old_locus_tag="YPCD1.32c"
CDS complement(22917..23204)
/gene="lcrG"
/locus_tag="YPO_RS00205"
/old_locus_tag="YPCD1.32c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002212973.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system chaperone LcrG"
/protein_id="WP_002212973.1"
/translation="MKSSHFDEYDKTLKQAELAIADSDHRAKLLQEMCADIGLTPEAV
MKIFAGRSAEEIKPAERELLDEIKRQRERQPQHPYDGKRPRKPTMMRGQII"
gene complement(23246..23686)
/gene="lcrR"
/locus_tag="YPO_RS00210"
/old_locus_tag="YPCD1.33c"
CDS complement(23246..23686)
/gene="lcrR"
/locus_tag="YPO_RS00210"
/old_locus_tag="YPCD1.33c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002220918.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system chaperone LcrR"
/protein_id="WP_002220918.1"
/translation="MMADPLIPWLTEHGLVCHPHTLSGTPISLGSAFQLAGLKLAWRV
EIEQRRVWIVLIQRVEQRRGLKNPFAALYMLANAARAVLGPDYYLYGNVDVLAGSSLS
TQRLAHFYRRWTGAKELSTGWFSLKVSQVITLSNMKKRQNNGFA"
gene complement(23683..25797)
/gene="lcrD"
/locus_tag="YPO_RS00215"
/old_locus_tag="YPCD1.34c"
CDS complement(23683..25797)
/gene="lcrD"
/locus_tag="YPO_RS00215"
/old_locus_tag="YPCD1.34c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002212971.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="SctV family type III secretion system export
apparatus subunit LcrD"
/protein_id="WP_002212971.1"
/translation="MNPHDLEWLNRIGERKDIMLAVLLLAVVFMMVLPLPPLVLDILI
AVNMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIV
YTFGNFVVGGNLIVGIVIFLIITIVQFLVITKGSERVAEVSARFSLDAMPGKQMSIDG
DMRAGVIDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIG
VTQKGLAAAEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSEDSSDLGSDIGK
QVVAQPKAMLIGGVLLLLFGLIPGFPTVTFLILALLVGCGGYMLSRKQSRNDEANQDL
QSILTSGSGAPAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAIALND
ELVRVRRALYLDLGVPFPGIHLRFNEGMGEGEYIISLQEVPVARGELKAGYLLVRESV
SQLELLGIPYEKGEHLLPDQEAFWVSVEYEERLEKSQLEFFSHSQVLTWHLSHVLREY
AEDFIGIQETRYLLEQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRSIL
EAMVEWGQKEKDVVQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQ
TSAGSYLALEPAVTESLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGL
PVLSYQELTQQINIQPLGRICL"
gene complement(25784..26128)
/gene="yscY"
/locus_tag="YPO_RS00220"
/old_locus_tag="YPCD1.35c"
CDS complement(25784..26128)
/gene="yscY"
/locus_tag="YPO_RS00220"
/old_locus_tag="YPCD1.35c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002229791.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system chaperone YscY"
/protein_id="WP_002229791.1"
/translation="MNITLTKRQQEFLLLNGWLQLQCGHAERACILLDALLTLNPEHL
AGRRCRLVALLNNNQGERAEKEAQWLISHDPLQAGNWLCLSRAQQLNGDLDKARHAYQ
HYLELKDHNESP"
gene complement(26125..26493)
/gene="yscX"
/locus_tag="YPO_RS00225"
/old_locus_tag="YPCD1.36c"
CDS complement(26125..26493)
/gene="yscX"
/locus_tag="YPO_RS00225"
/old_locus_tag="YPCD1.36c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002212969.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system protein YscX"
/protein_id="WP_002212969.1"
/translation="MSRIITAPHIGIEKLSAISLEELSCGLPERYALPPDGHPVEPHL
ERLYPTAQSKRSLWDFASPGYTFHGLHRAQDYRRELDTLQSLLTTSQSSELQAAAALL
KCQQDDDRLLQIILNLLHKV"
gene complement(26490..26861)
/gene="sycN"
/locus_tag="YPO_RS00230"
/old_locus_tag="YPCD1.37c"
CDS complement(26490..26861)
/gene="sycN"
/locus_tag="YPO_RS00230"
/old_locus_tag="YPCD1.37c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002229794.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion chaperone SycN"
/protein_id="WP_002229794.1"
/translation="MSWIEPIISHFCQDLGVPTSSPLSPLIQLEMAQSGTLQLEQHGA
TLTLWLARSLAWHRCEDAMVKALTLTAAQKSGALPLRAGWLGESQLVLFVSLDERSLT
LPLLHQAFEQLLRLQQEVLAP"
gene complement(26848..27126)
/gene="tyeA"
/locus_tag="YPO_RS00235"
/old_locus_tag="YPCD1.38c"
CDS complement(26848..27126)
/gene="tyeA"
/locus_tag="YPO_RS00235"
/old_locus_tag="YPCD1.38c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002212965.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system gatekeeper subunit
TyeA"
/protein_id="WP_002212965.1"
/translation="MAYDLSEFMGDIVALVDKRWAGIHDIEHLANAFSLPTPEIKVRF
YQDLKRMFRLFPLGVFSDEEQRQNLLQMCQNAIDMAIESEEEELSELD"
gene complement(27107..27988)
/gene="yopN"
/locus_tag="YPO_RS00240"
/old_locus_tag="YPCD1.39c"
CDS complement(27107..27988)
/gene="yopN"
/locus_tag="YPO_RS00240"
/old_locus_tag="YPCD1.39c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011191384.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="SctW family type III secretion system gatekeeper
subunit YopN"
/protein_id="WP_002212958.1"
/translation="MTTLHNLSYGNTPLHNERPEIASSQIVNQTLGQFRGESVQIVSG
TLQSIADMAEEVTFVFSERKELSLDKRKLSDSQARVSDVEEQVNQYLSKVPELEQKQN
VSELLSLLSNSPNISLSQLKAYLEGKSEEPSEQFKMLCGLRDALKGRPELAHLSHLVE
QALVSMAEEQGETIVLGARITPEAYRESQSGVNPLQPLRDTYRDAVMGYQGIYAIWSD
LQKRFPNGDIDSVILFLQKALSADLQSQQSGSGREKLGIVISDLQKLKEFGSVSDQVK
GFWQFFSEGKTNGVRPF"
gene 28186..29505
/gene="yscN"
/locus_tag="YPO_RS00245"
/old_locus_tag="YPCD1.40"
CDS 28186..29505
/gene="yscN"
/locus_tag="YPO_RS00245"
/old_locus_tag="YPCD1.40"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002212955.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="SctN family type III secretion system ATPase
YscN"
/protein_id="WP_002212955.1"
/translation="MLSLDQIPHHIRHGIVGSRLIQIRGRVTQVTGTLLKAVVPGVRI
GELCYLRNPDNSLSLQAEVIGFAQHQALLIPLGEMYGISSNTEVSPTGTMHQVGVGEH
LLGQVLDGLGQPFDGGHLPEPAAWYPVYQDAPAPMSRKLITTPLSLGIRVIDGLLTCG
EGQRMGIFAAAGGGKSTLLASLIRSAEVDVTVLALIGERGREVREFIESDLGEEGLRK
AVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTRFARAQREIGLAAG
EPPTRRGYPPSVFAALPRLMERAGQSSKGSITALYTVLVEGDDMTEPVADETRSILDG
HIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHKTWAGDLRRLLAKYEEVELLLQI
GEYQKGQDKEADQAIERMGAIRGWLCQGTHELSHFNETLNLLETLTQ"
gene 29502..29966
/gene="yscO"
/locus_tag="YPO_RS00250"
/old_locus_tag="YPCD1.41"
CDS 29502..29966
/gene="yscO"
/locus_tag="YPO_RS00250"
/old_locus_tag="YPCD1.41"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_005176819.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system central stalk protein
YscO"
/protein_id="WP_002212952.1"
/translation="MIRRLHRVKVLRVERAEKAIKTQQACLQAAHRRHQEAVQTSQDY
HLWRIDEEQRLFDQRKNTTLNCKDLEKWQRQIASLREKEANYELECAKLLERLANERE
RLTLCQKMLQQARHKENKFLELVRREDEDELNQQHYQEEQEQEEFLQHHRNA"
gene 29966..31333
/gene="yscP"
/locus_tag="YPO_RS00255"
/old_locus_tag="YPCD1.42"
CDS 29966..31333
/gene="yscP"
/locus_tag="YPO_RS00255"
/old_locus_tag="YPCD1.42"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002212950.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system needle length
determinant YscP"
/protein_id="WP_002212950.1"
/translation="MNKITTRSPLEPEYQPLGKPHHALQACVDFEQALLHNNKGNCHP
KEESLKPVRPHDLGKKEGQKGDGLRAHAPLAATSQPGRKEVGLKPQHNHQNNHDFNLS
PLAEGATNRAHLYQQDSRFDDRVESIINALMPLAPFLEGVTCETGTSSESPCEPSGHD
ELFVQQSPIDSAQPVQLNSKPTVQPLNPAADGAEVIVWSVGRETPASIAKNQRDSRQK
RLAEEPLALHQKALPEICPPAVSATPDDHLVARWCATPVTEVAEKSARFPYKATVQSE
QLDMTELADRSQHLTDGVDSSKDTIEPPRPEKLLLPREETLPEMYSLSFTAPVVTPGD
HLLATMRATRLASVSEQLIQLAQRLAVELELRGGSSQVTQLHLNLPELGAIMVRIAEI
PGKLHVELIASREALRILAQGSYDLLERLQRIEPTQLDFQASDDSEQESRQKRHVYEE
WEAEE"
gene 31330..32253
/gene="yscQ"
/locus_tag="YPO_RS00260"
/old_locus_tag="YPCD1.43"
CDS 31330..32253
/gene="yscQ"
/locus_tag="YPO_RS00260"
/old_locus_tag="YPCD1.43"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002212948.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="SctQ family type III secretion system
cytoplasmic ring protein YscQ"
/protein_id="WP_002212948.1"
/translation="MSLLTLPQAKLSELSLRQRLSHYQQNYLWEEGKLELTVSEPPSS
LNCILQLQWKGTHFTLYCFGNDLANWLTADLLGAPFFTLPKELQLALLERQTVFLPKL
VCNDIATASLSVTQPLLSLRLSRDNAHISFWLTSAEALFALLPARPNSERIPLPILIS
LRWHKVYLTLDEVDSLRLGDVLLAPEGSGPNSPVLAYVGENPWGYFQLQSNKLEFIGM
SHESDELNPEPLTDLNQLPVQVSFEVGRQILDWHTLTSLEPGSLIDLTTPVDGEVRLL
ANGRLLGHGRLVEIQGRLGVRIERLTEVTIS"
gene 32250..32903
/gene="yscR"
/locus_tag="YPO_RS00265"
/old_locus_tag="YPCD1.44"
CDS 32250..32903
/gene="yscR"
/locus_tag="YPO_RS00265"
/old_locus_tag="YPCD1.44"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_250384.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="SctR family type III secretion system export
apparatus subunit YscR"
/protein_id="WP_002212947.1"
/translation="MIQLPDEINLIIVLSLLTLLPLISVMATSFVKFAVVFSLLRNAL
GVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVSLTNIESVEKFFDEGLAPY
RMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLPAFTVSELTRAFEIGFL
IYLPFIVIDLVISNILLAMGMMMVSPMTISLPFKLLLFVLLDGWTRLTHGLVISYGG"
gene 32905..33171
/gene="yscS"
/locus_tag="YPO_RS00270"
/old_locus_tag="YPCD1.45"
CDS 32905..33171
/gene="yscS"
/locus_tag="YPO_RS00270"
/old_locus_tag="YPCD1.45"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_250383.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="SctS family type III secretion system export
apparatus subunit YscS"
/protein_id="WP_002212945.1"
/translation="MSQGDIIHFTSQALWLVLVLSMPPVLVAAVVGTLVSLVQALTQI
QEQTLGFVIKLIAVVVTLFATASWLGNELHSFAEMTMMKIQGIR"
gene 33168..33953
/gene="yscT"
/locus_tag="YPO_RS00275"
/old_locus_tag="YPCD1.46"
CDS 33168..33953
/gene="yscT"
/locus_tag="YPO_RS00275"
/old_locus_tag="YPCD1.46"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002212938.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="SctT family type III secretion system export
apparatus subunit YscT"
/protein_id="WP_002212938.1"
/translation="MIADLIQRPLLTYTLLLPRFMACFVILPVLSKQLLGGVLLRNGI
VCSLALYVYPAVANQPYIEVDAFTLMLLIGKEIILGLLIGFVATIPFWALESAGFIVD
NQRGAAMASLLNPGLDSQTSPTGLLLTQTLITIFFSGGAFLSLLSALFHSYVNWPVAS
FFPAVSEQWVDFFYNQFSQILLIAAVLAAPLLIAMFLAEFGLALISRFAPSLNVFVLA
MPIKSAIASLLLVIYCMQMMSHASKAMLLVMDPISLLIPVLEK"
gene 33953..35017
/gene="yscU"
/locus_tag="YPO_RS00280"
/old_locus_tag="YPCD1.47"
CDS 33953..35017
/gene="yscU"
/locus_tag="YPO_RS00280"
/old_locus_tag="YPCD1.47"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002212936.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system export apparatus
switch protein YscU"
/protein_id="WP_002212936.1"
/translation="MSGEKTEQPTPKKIRDARKKGQVAKSKEVVSTALIVALSAMLMG
LSDYYFEHFSKLMLIPAEQSYLPFSQALSYVVDNVLLEFFYLCFPLLTVAALMAIASH
VVQYGFLISGEAIKPDIKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKG
NLVTLLQLPTCGIECITPLLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSK
DEIKREYKEMEGSPEIKSKRRQFHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRG
ETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEAT
AEVLRWLERQNIEKQHSEML"
gene 35593..35988
/gene="yscW"
/locus_tag="YPO_RS00285"
/old_locus_tag="YPCD1.48"
CDS 35593..35988
/gene="yscW"
/locus_tag="YPO_RS00285"
/old_locus_tag="YPCD1.48"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002222527.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system pilotin YscW"
/protein_id="WP_002222527.1"
/translation="MSRIIALIISFLLVGCATPPMPAQRIVGEVRMSRPLSRIAHIDV
SMFGLYEGKVREVQRTHFETGNLPLFFSIKLNPAQRGEGELYLRSTLSFPERGVQAVA
QQKLTGKNKVVLQMIPKTCYPNCQLPNTR"
gene 36112..36927
/gene="virF"
/locus_tag="YPO_RS00290"
/old_locus_tag="YPCD1.49"
CDS 36112..36927
/gene="virF"
/locus_tag="YPO_RS00290"
/old_locus_tag="YPCD1.49"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_010891222.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="virulence regulon transcriptional activator
VirF"
/protein_id="WP_002212931.1"
/translation="MASLEIIKLEWVTPIFKVVEHSQDGLYILLQGQISWQSSGQTYD
LDEGNMLFLRRGSYAVRCGTKEPCQLLWIPLPGSFLSTFLHRFGSLLSEIGRDNSTPK
PLLIFNISPILSQSIQNLCAILERSDFPSVLTQLRIEELLLLLAFSSQGTLFLSALRH
LGNRPEERLQKFMEENYLQGWKLSKFAREFGMGLTTFKELFGTVYGISPRAWISERRI
LYAHQLLLNGKMSIVDIAMEAGFSSQSYFTQSYRRRFGCTPSQARLTKIATTG"
gene 37006..37104
/gene="yscA"
/locus_tag="YPO_RS00295"
/old_locus_tag="YPCD1.50"
CDS 37006..37104
/gene="yscA"
/locus_tag="YPO_RS00295"
/old_locus_tag="YPCD1.50"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002229797.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system protein YscA"
/protein_id="WP_002229797.1"
/translation="MSQISTKHRTVLFRRWMAIICCLIINIAYLVY"
gene 37330..37743
/gene="yscB"
/locus_tag="YPO_RS00300"
/old_locus_tag="YPCD1.51"
CDS 37330..37743
/gene="yscB"
/locus_tag="YPO_RS00300"
/old_locus_tag="YPCD1.51"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002212925.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system chaperone YscB"
/protein_id="WP_002212925.1"
/translation="MQNLLKNLAASLGRKPFVADKQGVYRLTIDKHLVMLAPHGSELV
LRTPIDAPMLREGNNVNVTLLRSLMQQALAWAKRYPQTLVLDDCGQLVLEARLRLQEL
DTHGLQEVINKQLALLEHLIPQLTPFSVASRVGWN"
gene 37749..39572
/gene="yscC"
/locus_tag="YPO_RS00305"
/old_locus_tag="YPCD1.52"
CDS 37749..39572
/gene="yscC"
/locus_tag="YPO_RS00305"
/old_locus_tag="YPCD1.52"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002212923.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="SctC family type III secretion system outer
membrane ring subunit YscC"
/protein_id="WP_002212923.1"
/translation="MAFPLHSFFKRVLTGTLLLLSNYSWAQELDWLPIPYVYVAKGES
LRDLLIDFSANYDATVVVSDKINDKVSGQFEHDNPQDFLQHIASLYNLVWYYDGNVLY
IFKNSEVASRLIRLQESEAAELKLALQRSGIWEPRFGWRPDASNRLVYVSGPPRYLEL
VEQTAAALEQQTQIRSEKTGALAIEIFPLKYASASDRTIHYRDDEVAAPGVATILQRV
LSDATIQQVTVDNQRIPQAATRASAQAKVEADPSLNAIIVRDSPERMPMYQRLIHALD
KPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVIKTTGDQSNIASNGALGS
LIDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDHHETYYVKVTGKEVAE
LKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGIDGIPTISRTVVDTVA
RVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELTRRTVRLFIIEPRI
IDEGIAHHLALGNGRDLRTGILAVDEISNQSTTLNKLLGGFQCQPLNKAQEVQKWLSQ
NNKSSYLTQCKMDKSLGWRVVEGACTPAESWCVSAPKRGVL"
gene 39569..40828
/gene="yscD"
/locus_tag="YPO_RS00310"
/old_locus_tag="YPCD1.53"
CDS 39569..40828
/gene="yscD"
/locus_tag="YPO_RS00310"
/old_locus_tag="YPCD1.53"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002212919.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="SctD family type III secretion system inner
membrane ring subunit YscD"
/protein_id="WP_002212919.1"
/translation="MSWVCRFYQGKHRGVEVELPHGRCVFGSDPLQSDIVLSDSEIAP
VHLVLMVDEEGIRLTDSAEPLLQEGLPVPLGTLLRAGSCLEVGFLLWTFVAVGQPLPE
TLQVPTQRKEPTDRLPRSRLGIGLGVLSLLLLLTFLGLLGHGLWREYNQDGQLVEQEV
RRLLATAAYKDVVLTSPKKEGEPWLLTGYIQDNHARLSLQNFLESHGIPFRLELRSME
ELRQGAEFILQRLGYHGIEVSLAPQAGWLQLNGEVSEEIQKQKIDSLLQAEVPGLLGV
ESKVRIAGNQRKRLDALLEQFGLDSDFTVNVKGELIELRGQVNDEKLNSFNQLQQTFR
QEFGNRPKLELVNVGGQPQHDELNFEVQAISLGKVPYVVLDNHQRYPEGAILNNGVRI
LAIRRDAVIVSKGKREFVIQLNGGKPR"
gene 40825..41025
/gene="yscE"
/locus_tag="YPO_RS00315"
/old_locus_tag="YPCD1.54"
CDS 40825..41025
/gene="yscE"
/locus_tag="YPO_RS00315"
/old_locus_tag="YPCD1.54"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002212917.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system co-chaperone YscE"
/protein_id="WP_002212917.1"
/translation="MTQLEEQLHNVETVRSITMQLEMALTKLKKDMMRGGDAKQYQVW
QRESKALESAIAIIHYVAGDLK"
gene 41026..41289
/gene="yscF"
/locus_tag="YPO_RS00320"
/old_locus_tag="YPCD1.55"
CDS 41026..41289
/gene="yscF"
/locus_tag="YPO_RS00320"
/old_locus_tag="YPCD1.55"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002212916.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system needle filament
protein YscF"
/protein_id="WP_002212916.1"
/translation="MSNFSGFTKGTDIADLDAVAQTLKKPADDANKAVNDSIAALKDK
PDNPALLADLQHSINKWSVIYNINSTIVRSMKDLMQGILQKFP"
gene 41291..41638
/gene="yscG"
/locus_tag="YPO_RS00325"
/old_locus_tag="YPCD1.56"
CDS 41291..41638
/gene="yscG"
/locus_tag="YPO_RS00325"
/old_locus_tag="YPCD1.56"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002229801.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system chaperone YscG"
/protein_id="WP_002229801.1"
/translation="MKYKLNVLLAEIALIGTGNHYHEEANCIAEWLHLKGEEEAVQLI
RLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEYRLGLGSALESRLNRLARSQDPRI
QTFVNGMREQLKT"
gene 41635..42132
/gene="yopR"
/locus_tag="YPO_RS00330"
/old_locus_tag="YPCD1.57"
/gene_synonym="yscH"
CDS 41635..42132
/gene="yopR"
/locus_tag="YPO_RS00330"
/old_locus_tag="YPCD1.57"
/gene_synonym="yscH"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002212915.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="T3SS polymerization control protein YopR"
/protein_id="WP_002212915.1"
/translation="MTVTLNRGSITSLMSSSQAVSTLQPVASELKTQLENKLKSESAE
KTREVLWQQYYASNPPDHAVLEVLATPVREALLARFGQHQGSVVPAIDLPELRSVLQQ
FDSFGKRWEAILLQVLEGIKPNESQVGLPYLSELINKELMILLPSNSIVDSLLHNSHQ
IDMDT"
gene 42133..42480
/gene="lcrO"
/locus_tag="YPO_RS00335"
/old_locus_tag="YPCD1.58"
/gene_synonym="yscI"
CDS 42133..42480
/gene="lcrO"
/locus_tag="YPO_RS00335"
/old_locus_tag="YPCD1.58"
/gene_synonym="yscI"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002212914.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="SctI family type III secretion system inner rod
subunit LcrO"
/protein_id="WP_002212914.1"
/translation="MPNIEIAQADEVIITTLEELGPAEPTTDQIMRFDAAMSEDTQGL
GHSLLKEVSDIQKSFKTVKSDLHTKLAVSVDNPNDLMLMQWSLIRITIQEELIAKTAG
RMSQNVETLSKGG"
gene 42487..43221
/gene="yscJ"
/locus_tag="YPO_RS00340"
/old_locus_tag="YPCD1.59"
CDS 42487..43221
/gene="yscJ"
/locus_tag="YPO_RS00340"
/old_locus_tag="YPCD1.59"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002212912.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="SctJ family type III secretion inner membrane
ring lipoprotein YscJ"
/protein_id="WP_002212912.1"
/translation="MKVKTSLSTLILILFLTGCKVDLYTGISQKEGNEMLALLRQEGL
SADKEPDKDGKIKLLVEESDVAQAIDILKRKGYPHESFSTLQDVFPKDGLISSPIEEL
ARLNYAKAQEISRTLSEIDGVLVARVHVVLPEEQNNKGKKGVAASASVFIKHAADIQF
DTYIPQIKQLVNNSIEGLAYDRISVILVPSVDVRQSSHLPRNTSILSIQVSEESKGHL
IGLLSLLILLLPVTNLAQYFWLQRKK"
gene 43221..43850
/gene="yscK"
/locus_tag="YPO_RS00345"
/old_locus_tag="YPCD1.60"
/gene_synonym="sctK"
CDS 43221..43850
/gene="yscK"
/locus_tag="YPO_RS00345"
/old_locus_tag="YPCD1.60"
/gene_synonym="sctK"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002361471.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="SctK family type III secretion system sorting
platform protein YscK"
/protein_id="WP_002361471.1"
/translation="MMENYITSFQLRFCPAAYLHLEQLPSLWRSILPYLPQWRDSAHL
NAALLDEFSLDTDYEEPHGLGALPLQPQSQLELLLCRLGLVLHGEAIRRCVLASPLQQ
LLTLVNQETLRQIIVQHELLIGPWPTHWQRPLPTEIESRTMIQSGLAFWLAAMEPQPQ
AWCKRLSLRLPLATPSEPWLVAESQRPLAQTLCHKLVKQVTPTCSHLFK"
gene 43796..44461
/gene="yscL"
/locus_tag="YPO_RS00350"
/old_locus_tag="YPCD1.61"
CDS 43796..44461
/gene="yscL"
/locus_tag="YPO_RS00350"
/old_locus_tag="YPCD1.61"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_010981371.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="SctL family type III secretion system stator
protein YscL"
/protein_id="WP_010981371.1"
/translation="MSQTCQTGYAYMQPFVQIIPSNLSLACGLRILRAEDYQSSLTTE
ELISAAKQDAEKILADAQEVYEQQKQLGWQAGMDEARTLQATLIHETQLQCQQFYRHV
EQQMSEVVLLAVRKILNDYDQVAMTLQVVREALALVSNQKQVVVRVNPDQAGAIREQI
AKVHKDFPEISYLEVTADARLDQGGCILETEVGIIDASIDGQIEALSRAISTTLGQMK
VTE"
gene 44686..45033
/gene="lcrQ"
/locus_tag="YPO_RS00355"
/old_locus_tag="YPCD1.62"
CDS 44686..45033
/gene="lcrQ"
/locus_tag="YPO_RS00355"
/old_locus_tag="YPCD1.62"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002212907.1"
/GO_process="GO:0006470 - protein dephosphorylation
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system exported negative
regulator LcrQ/YscM1"
/protein_id="WP_002212907.1"
/translation="MKINTLQSLINQQITQVGHGGQAGRLTETNPLTENSHQISTAEK
AFANEVLEHVKNTALSRHDIACLLPRVSNLELKQGKAGEVIVTGLRTEQLSLSDAKLL
LEAAMRQDTAADG"
gene 45581..46610
/locus_tag="YPO_RS00360"
/pseudo
CDS 45581..46610
/locus_tag="YPO_RS00360"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076611456.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="frameshifted; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS3 family transposase"
gene <46629..46901
/locus_tag="YPO_RS00365"
/pseudo
CDS <46629..46901
/locus_tag="YPO_RS00365"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000343613.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="transposase"
gene complement(47122..48528)
/gene="yopH"
/locus_tag="YPO_RS00370"
/old_locus_tag="YPCD1.67c"
CDS complement(47122..48528)
/gene="yopH"
/locus_tag="YPO_RS00370"
/old_locus_tag="YPCD1.67c"
/EC_number="3.1.3.48"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002213278.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="T3SS effector protein-tyrosine-phosphatase YopH"
/protein_id="WP_002213278.1"
/translation="MNLSLSDLHRQVSRLVQQESGDCTGKLRGNVAANKETTFQGLTI
ASGARESEKVFAQTVLSHVANVVLTQEDTAKLLQSTVKHNLNNYDLRSVGNGNSVLVS
LRSDQMTLQDAKVLLEAALRQESGARGHVSSHSHSALHAPGTPVREGLRSHLDPRTPP
LPPRERPHTSGHHGAGEARATAPSTVSPYGPEARAELSSRLTTLRNTLAPATNDPRYL
QACGGEKLNRFRDIQCCRQTAVRADLNANYIQVGNTRTIACQYPLQSQLESHFRMLAE
NRTPVLAVLASSSEIANQRFGMPDYFRQSGTYGSITVESKMTQQVGLGDGIMADMYTL
TIREAGQKTISVPVVHVGNWPDQTAVSSEVTKALASLVDQTAETKRNMYESKGSSAVG
DDSKLRPVIHCRAGVGRTAQLIGAMCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQ
LDVLIKLAEGQGRPLLNS"
gene complement(48811..>49044)
/locus_tag="YPO_RS00375"
/old_locus_tag="YPCD1.68c"
/pseudo
CDS complement(48811..>49044)
/locus_tag="YPO_RS00375"
/old_locus_tag="YPCD1.68c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011145417.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="transposase domain-containing protein"
gene <49047..49625
/locus_tag="YPO_RS00380"
/old_locus_tag="YPCD1.69"
/pseudo
CDS <49047..49625
/locus_tag="YPO_RS00380"
/old_locus_tag="YPCD1.69"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076611505.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS3 family transposase"
gene complement(<49890..>49994)
/locus_tag="YPO_RS21890"
/pseudo
CDS complement(<49890..>49994)
/locus_tag="YPO_RS21890"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000513068.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus and C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="GNAT family N-acetyltransferase"
gene complement(50211..51077)
/gene="yopJ"
/locus_tag="YPO_RS00385"
/old_locus_tag="YPCD1.71c"
CDS complement(50211..51077)
/gene="yopJ"
/locus_tag="YPO_RS00385"
/old_locus_tag="YPCD1.71c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002225474.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system effector
acetyltransferase YopJ"
/protein_id="WP_002213287.1"
/translation="MIGPISQINISGGLSEKETSSLISNEELKNIITQLETDISDGSW
FHKNYSRMDVEVMPALVIQANNKYPEMNLNLVTSPLDLSIEIKNVIENGVRSSRFIIN
MGEGGIHFSVIDYKHINGKTSLILFEPANFNSMGPAMLAIRTKTAIERYQLPDCHFSM
VEMDIQRSSSECGIFSFALAKKLYIERDSLLKIHEDNIKGILSDGKNPLPHDKLDPYL
PVTFYKHTQGKKRLNEYLNTNPQGVGTVVNKKNETIVNRFDNNKSIVDGKELSVSVHK
KRIAEYKTLLKV"
gene complement(51473..53671)
/gene="yopO"
/locus_tag="YPO_RS00390"
/old_locus_tag="YPCD1.72c"
/gene_synonym="ypkA"
CDS complement(51473..53671)
/gene="yopO"
/locus_tag="YPO_RS00390"
/old_locus_tag="YPCD1.72c"
/gene_synonym="ypkA"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011191359.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system effector protein
kinase YopO/YpkA"
/protein_id="WP_002213290.1"
/translation="MKSVKIMGTMPPSISLAKAHERISQHWQNPVGELNIGGKRYRII
DNQVLRLNPHSGFSLFREGVGKIFSGKMFNFSIARNLTDTLHAAQKTTSQELRSDIPN
ALSNLFGAKPQTELPLGWKGEPLSGAPDLEGMRVAETDKFAEGESHISIIETKDKQRL
VAKIERSIAEGHLFAELEAYKHIYKTAGKHPNLANVHGMAVVPYGNRKEEALLMDEVD
GWRCSDTLRTLADSWKQGKINSEAYWGTIKFIAHRLLDVTNHLAKAGVVHNDIKPGNV
VFDRASGEPVVIDLGLHSRSGEQPKGFTESFKAPELGVGNLGASEKSDVFLVVSTLLH
CIEGFEKNPEIKPNQGLRFITSEPAHVMDENGYPIHRPGIAGVETAYTRFITDILGVS
ADSRPDSNEARLHEFLSDGTIDEESAKQILKDTLTGEMSPLSTDVRRITPKKLRELSD
LLRTHLSSAATKQLDMGGVLSDLDTMLVALDKAEREGGVDKDQLKSFNSLILKTYRVI
EDYVKGREGDTKNSSTEVSPYHRSNFMLSIVEPSLQRIQKHLDQTHSFSDIGSLVRAH
KHLETLLEVLVTLSQQGQPVSSETYGFLNRLTEAKITLSQQLNTLQQQQESAKAQLSI
LINRSGSWADVARQSLQRFDSTRPVVKFGTEQYTAIHRQMMAAHAAITLQEVSEFTDD
MRNFTVDSIPLLIQLGRSSLMDEHLVEQREKLRELTTIAERLNRLEREWM"
gene complement(53679..54128)
/locus_tag="YPO_RS00395"
/old_locus_tag="YPCD1.73c"
CDS complement(53679..54128)
/locus_tag="YPO_RS00395"
/old_locus_tag="YPCD1.73c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002229809.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system chaperone"
/protein_id="WP_002229809.1"
/translation="MINTTFTELLPKIASHFGLDKLSQDEYGLCELILNDRVVIMLRA
DEILNRLTLLGPILGFSGPEARSAASQLFFCYSINALNKDGPCFAWSEELGLIAFKHL
SLDELNVENVSKEIANFYDWLSLVSLPAETQQELPLHTQSTQSVKWG"
gene complement(54384..>54693)
/locus_tag="YPO_RS00400"
/old_locus_tag="YPCD1.74c"
/pseudo
CDS complement(54384..>54693)
/locus_tag="YPO_RS00400"
/old_locus_tag="YPCD1.74c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_086558235.1"
/GO_process="GO:0015074 - DNA integration [Evidence IEA]"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing N-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="integrase core domain-containing protein"
gene complement(<54702..54880)
/gene="tnpB"
/locus_tag="YPO_RS21895"
/pseudo
CDS complement(<54702..54880)
/gene="tnpB"
/locus_tag="YPO_RS21895"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000957248.1"
/note="TnpB, as the term is used for proteins encoded by
IS66 family insertion elements, is considered an accessory
protein, since TnpC, encoded by a neighboring gene, is a
DDE family transposase.; frameshifted; incomplete; partial
in the middle of a contig; missing C-terminus; Derived by
automated computational analysis using gene prediction
method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS66 family insertion sequence element accessory
protein TnpB"
gene complement(54874..55113)
/locus_tag="YPO_RS00405"
CDS complement(54874..55113)
/locus_tag="YPO_RS00405"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012414139.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_002213291.1"
/translation="MSKKHYCRLHDLNIATFYYWLKHHQDDTTVAIPPAFIPARRVIP
DNNGTEAVTLNLPNGCSVSCLPAQLRAVMQALSLC"
gene complement(56291..57169)
/gene="repA"
/locus_tag="YPO_RS00410"
/old_locus_tag="YPCD1.77c"
CDS complement(56291..57169)
/gene="repA"
/locus_tag="YPO_RS00410"
/old_locus_tag="YPCD1.77c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002213292.1"
/GO_process="GO:0006276 - plasmid maintenance [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="incFII family plasmid replication initiator
RepA"
/protein_id="WP_002213292.1"
/translation="MREGVTNHQALFTHHYRQVKNPNPEFTPREGKKTLPFCRKLMAK
AEGFTSRFDFSMHVAFARSLSLRHRMPPLLRRRAIDALLQGMCFHYDPLANRIQRSIT
NLAIECGLATESKSGNLSITRATRALRFLSELGLITYQTEYDPQIGCNIPTDITFTPA
LFSALDVSDVAVAAARRSRVEWENQQREKQRLPRLEMDELIAKAWRFVRERFRSYQTE
RKAHGLKRARARRDVDRTRRDIEAIVNRQLTREIAEGRFVGNLDAVRREKARRVKERM
LMSRNNNYTRLATGAT"
gene complement(57150..57224)
/gene="tap"
/locus_tag="YPO_RS00415"
/old_locus_tag="YPCD1.78c"
CDS complement(57150..57224)
/gene="tap"
/locus_tag="YPO_RS00415"
/old_locus_tag="YPCD1.78c"
/inference="COORDINATES: protein motif:HMM:TIGR03475.1"
/GO_function="GO:0003674 - molecular_function [Evidence
IEA]"
/GO_process="GO:0006276 - plasmid maintenance [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="RepA leader peptide Tap"
/protein_id="WP_002233140.1"
/translation="MFRKVQYLLRLLLLPCNISAGRCD"
gene complement(57466..57720)
/gene="repA"
/locus_tag="YPO_RS00420"
/old_locus_tag="YPCD1.79c"
CDS complement(57466..57720)
/gene="repA"
/locus_tag="YPO_RS00420"
/old_locus_tag="YPCD1.79c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002229817.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="replication regulatory protein RepA"
/protein_id="WP_002229817.1"
/translation="MSQIENAVTSSSKRAYRKGNPLTGAEKQRMSVSRKKETHKAINV
FIQNDLKNELLQLCEDSGLTQTEMIERWIQREKAARTNAA"
gene complement(57858..>58106)
/locus_tag="YPO_RS00425"
/pseudo
CDS complement(57858..>58106)
/locus_tag="YPO_RS00425"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001194258.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="phospholipase D-like domain-containing protein"
gene complement(58126..>58306)
/locus_tag="YPO_RS21905"
/pseudo
CDS complement(58126..>58306)
/locus_tag="YPO_RS21905"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_086558235.1"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing N-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS3 family transposase"
gene <58232..>58540
/locus_tag="YPO_RS00430"
/old_locus_tag="YPCD1.81"
/pseudo
CDS <58232..>58540
/locus_tag="YPO_RS00430"
/old_locus_tag="YPCD1.81"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_086558235.1"
/GO_process="GO:0015074 - DNA integration [Evidence IEA]"
/note="incomplete; partial in the middle of a contig;
missing N-terminus and C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="DDE-type integrase/transposase/recombinase"
gene complement(<58535..59271)
/locus_tag="YPO_RS21910"
/pseudo
CDS complement(<58535..59271)
/locus_tag="YPO_RS21910"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_086558235.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS3 family transposase"
gene complement(59443..59901)
/locus_tag="YPO_RS00445"
/old_locus_tag="YPCD1.84c"
CDS complement(59443..59901)
/locus_tag="YPO_RS00445"
/old_locus_tag="YPCD1.84c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002213246.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_002213246.1"
/translation="MGGMAAHWFTYQYAVPFCGRAKTLVTLSNAEGESVLISPQQNTA
QDISLFMPRELTVSQGDRVRFTRSDTDRGYVANSLWEVAGFTEDGAVRFRQGDQEKIV
DPQKATEDRHIDLAYTLTAYGVQGASERFVIALFGAEGGRKRMATLHLFT"
gene 59970..>60346
/locus_tag="YPO_RS00450"
/old_locus_tag="YPCD1.85"
/pseudo
CDS 59970..>60346
/locus_tag="YPO_RS00450"
/old_locus_tag="YPCD1.85"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_086558235.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="transposase"
gene complement(60304..60420)
/locus_tag="YPO_RS21915"
CDS complement(60304..60420)
/locus_tag="YPO_RS21915"
/inference="COORDINATES: protein motif:HMM:NF013088.2"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_002213250.1"
/translation="MKLTVETISPIFATGIRFMLAAPVLILITSTRKFSEAE"
gene complement(60565..61665)
/locus_tag="YPO_RS00455"
/old_locus_tag="YPCD1.87c"
CDS complement(60565..61665)
/locus_tag="YPO_RS00455"
/old_locus_tag="YPCD1.87c"
/inference="COORDINATES: protein motif:HMM:NF033478.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="YadA-like family protein"
/protein_id="WP_231847522.1"
/translation="MTSTRSTRSRKKRARLAEAIQPQVLGAGGLNARAKDPYSIAIGA
TAEAAKPAAIAVGSGSMATGVDSVAIGPLSKALGDSAVTYGVSSTAQKDGVAIGAKAS
ASDTGVAVGFNSKVDAQNSVAIGHSSHVAADHGYSIAIGDHSKTDRENSVSIGHESLN
RQLTHLAAGTEDTDAVNVAQLKKEMAETLENARKETLAQSNDVLDAAKKHSNSVARTT
LETAEEHANKKSAETLVSAKVYADSNSSQTLKTANSYTDVTVSNSTKKATRESNQYTD
HKFSQLDNRLDKLDKRVDKGLASSAALNSLFQPYGVGKVNFTAGVGGYRSSQALAIGS
GYRVNESVAFKAGVAYAGSSNVMYNASFNIEW"
gene complement(61617..61868)
/locus_tag="YPO_RS21920"
CDS complement(61617..61868)
/locus_tag="YPO_RS21920"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002356450.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_002356450.1"
/translation="MTKDFKISVSAALISALFSSPYAFAEEPEDGSDGIPRLSAVQIS
PNVDPKLGVGLYPAKPILRQENPKLPPRGPQGPEKKELD"
gene <62480..>62812
/locus_tag="YPO_RS00460"
/old_locus_tag="YPCD1.89"
/pseudo
CDS <62480..>62812
/locus_tag="YPO_RS00460"
/old_locus_tag="YPCD1.89"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076611501.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus and C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS3 family transposase"
gene complement(62851..65166)
/locus_tag="YPO_RS00465"
/old_locus_tag="YPCD1.90c"
CDS complement(62851..65166)
/locus_tag="YPO_RS00465"
/old_locus_tag="YPCD1.90c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076611787.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="Tn3 family transposase"
/protein_id="WP_002213256.1"
/translation="MPVDFLTTEQEQNYGCYVAEPNDVQLVRYFHLDERDLAFIYQRR
GKHNRLGIALQLTTARFLGTFITDLTQVLPGVQHFVAVQLNIRRPEVLSRYAERDTTR
REHTAQIKEYYGYHEFGDFPWSFRLKRLLYTRAWLSNERPGLMFDFATAWLLQNKILL
PGATTLVRLVSEIRERANQRLWKKLAAIHYLTELNGTKKRLLDDAPEHIITGPWKRLV
YDAEGRIQRAGYSLCLLERLQDALRRRDIWLKNSDRWGDLREKLLQGEEWQAQRVLVC
RALGHPTDGHKGVQQLAVQLDETWRAVASRFEGNTEVHICNDGKYPSLTISSLEKLEE
PLSLLRLNNRVRQLLPPVDLTELLLEIDARTGFTREFTHVSESGARAQDLHISLCAVL
MAEACNIGLEPLIKHNIPALTRHRLSWMKQNYLQAETLVSANARLVDFQSTLELARRW
GGGEVASVDGMRFVTPVKTVNSGPNRKYFGSGRGITWYNFVSDQYSGFHGIVVPGTLR
DSIFVLEGLLEQQTGLNPVEIMTDTAGTSDIIFGLFWLLGYQFSPRLADAGEAVFWRV
DKSANYGALDELARGCADLSKAENQWDEMMRTAGSLKLGTIHASELIRSLLKSSRPSG
LAQAIMAVGRVNKTLYLLNYIDDEDYRRRILTQLNRGESRHAVARAICYGQRGEIRKR
YREGQEDQLGALGLVTNAVVLWNTLYMQEALSWMRSNGEETRDEDIARLSPLMHGHIN
MLGHYTFTLSDDILNGELRALNFNLNNELSP"
gene 65330..65881
/locus_tag="YPO_RS00470"
/old_locus_tag="YPCD1.91"
CDS 65330..65881
/locus_tag="YPO_RS00470"
/old_locus_tag="YPCD1.91"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012228742.1"
/GO_function="GO:0000150 - DNA strand exchange activity
[Evidence IEA]"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_process="GO:0006310 - DNA recombination [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="recombinase family protein"
/protein_id="WP_002213258.1"
/translation="MRLFGYARVSTSQQSLDIQIKTLKDAGVKANRIFTDKASGSSAD
REGLDLLRMKVEEGDVILVKKLDRLGRDTVDMIQLIKEFDAQGVSIQFIDDGISTDGE
MGKMVVTILSAVAQAERQRILERTNEGREEAKLKGVKFGRKRRINRKELLELHEQGMG
ATEIAKKMNIARSTIYKVINESQ"
gene 65900..66364
/locus_tag="YPO_RS00475"
/old_locus_tag="YPCD1.91n"
CDS 65900..66364
/locus_tag="YPO_RS00475"
/old_locus_tag="YPCD1.91n"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012414143.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_002224338.1"
/translation="MNLQNNLYSILEKVESLKNIKMLDKNNGEFTYIEGDYYFSDLTT
DSLNIYEIKYLFTFENFDFFSNGKPNEVSVYKATNSFNSVCLGIKASLNSLDVERKEL
TVQFTYSMVFDASKGIPNFSNELETSMGLLRIAPKKLSNSFKDKGIEHNYVN"
gene 66503..66832
/locus_tag="YPO_RS00480"
/old_locus_tag="YPCD1.92"
CDS 66503..66832
/locus_tag="YPO_RS00480"
/old_locus_tag="YPCD1.92"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002229829.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_002229829.1"
/translation="MLTFFAKYYFDLFFNKEKNRKEKEITTRLEKRISKLEKENISLR
DDLIKCKLEHIDEVMRIERSLNTQLKTNYKNNNNENLWAGIDDIIKTIECVSIESKIG
GVKTNLK"
gene 66932..68031
/locus_tag="YPO_RS00485"
/old_locus_tag="YPCD1.94"
CDS join(66932..67193,67193..68031)
/locus_tag="YPO_RS00485"
/old_locus_tag="YPCD1.94"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076611504.1"
/ribosomal_slippage
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="programmed frameshift; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/codon_start=1
/transl_table=11
/product="IS3-like element ISYpe1 family transposase"
/protein_id="WP_086016640.1"
/translation="MKKTRYTEEQIAFALKQAETGTRVEEVCRKMGISEATFYNWKKK
FGGMGVTELRRLRQLEDENQRLKRLVADLSLDKEMLQDVIRKKFLRPLQKRDAVEYLL
AAYRIGVRRGCRLMMQSRTVYNYRSHRDDRAITQRIREIAETRIRYGCPRIHILLRRE
GWLVNHKKTHRIYCLEGLNLRSKRPRRHVTAKHRHARPEVTALEQCWSMDFVADNLFN
GRRVRALTIVDNFSRECLAIEVGQGLRGDDVVAVMDRLKHSLGRIPQRLQTDNGSEFI
SKSMDRWAYENRVTMDCSRPGKPTDNAFIESFNGSLRDECLNVHGFLSLEDAQEKIEQ
WRQEYNHFHPHSSLNNLTPAEFARSHQKGPDL"
gene complement(68179..68604)
/gene="sycH"
/locus_tag="YPO_RS00490"
/old_locus_tag="YPCD1.95c"
CDS complement(68179..68604)
/gene="sycH"
/locus_tag="YPO_RS00490"
/old_locus_tag="YPCD1.95c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002213267.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type III secretion system chaperone SycH"
/protein_id="WP_002213267.1"
/translation="MRTYSSLLEEFATELGLEEIETNELGHGAVTIDKIWVVHLAPIN
EKELVAFMRAGILTGQSQLYDILRKNLFSPLSGVIRCALDKDDHWLLWSQLNINDTSG
TQLASVLTSLVDKAVTLSCEPTMKKEEDDHRPSSSHLLV"
gene complement(<68980..69378)
/locus_tag="YPO_RS00495"
/old_locus_tag="YPCD1.96c"
/pseudo
CDS complement(<68980..69378)
/locus_tag="YPO_RS00495"
/old_locus_tag="YPCD1.96c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000544830.1"
/GO_function="GO:0005524 - ATP binding [Evidence IEA]"
/note="incomplete; partial in the middle of a contig;
missing C-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="ATP-binding protein"
gene complement(69378..>70304)
/gene="istA"
/locus_tag="YPO_RS00500"
/old_locus_tag="YPCD1.97c"
/pseudo
CDS complement(69378..>70304)
/gene="istA"
/locus_tag="YPO_RS00500"
/old_locus_tag="YPCD1.97c"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000952428.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS21 family transposase"
CONTIG join(AL117189.1:1..70305)
//
