LOCUS NC_007372 2341 bp cRNA linear VRL 13-AUG-2018
DEFINITION Influenza A virus (A/New York/392/2004(H3N2)) segment 2, complete
sequence.
ACCESSION NC_007372
VERSION NC_007372.1
DBLINK BioProject: PRJNA485481
KEYWORDS RefSeq.
SOURCE Influenza A virus (A/New York/392/2004(H3N2))
ORGANISM Influenza A virus (A/New York/392/2004(H3N2))
Viruses; Riboviria; Orthornavirae; Negarnaviricota;
Polyploviricotina; Insthoviricetes; Articulavirales;
Orthomyxoviridae; Alphainfluenzavirus; Alphainfluenzavirus
influenzae.
REFERENCE 1 (bases 1 to 2341)
AUTHORS Ghedin,E., Miller,N., Zaborsky,J., Feldblyum,T., Subbu,V.,
Shumway,M., Sitz,J., Kosack,D., Koo,H., Salzberg,S.L.,
Griesemer,S., St. George,K., Bennett,R., Taylor,J., Bao,Y.,
Bolotov,P., Dernovoy,D., Lipman,D.J. and Tatusova,T.
TITLE The NIAID Influenza Genome Sequencing Project
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2341)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (30-AUG-2005) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2341)
CONSRTM The NIAID Influenza Genome Sequencing Consortium
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2005) on behalf of TIGR/Wadsworth-NYSDOH/NCBI,
National Center for Biotechnology Information, NIH, Bethesda, MD
20894, USA
COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The
reference sequence was derived from CY002070.
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..2341
/organism="Influenza A virus (A/New York/392/2004(H3N2))"
/mol_type="viral cRNA"
/strain="A/New York/392/2004"
/serotype="H3N2"
/isolation_source="gender:M; age:16y"
/host="Homo sapiens"
/db_xref="taxon:335341"
/segment="2"
/lab_host="RhMK 1 passage(s)"
/country="USA: Tompkins County, NY"
/collection_date="21-Dec-2004"
gene 25..2298
/gene="PB1"
/locus_tag="FLUAVH3N2_s2p1"
/db_xref="GeneID:3655159"
CDS 25..2298
/gene="PB1"
/locus_tag="FLUAVH3N2_s2p1"
/codon_start=1
/product="polymerase PB1"
/protein_id="YP_308847.1"
/db_xref="GeneID:3655159"
/translation="MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVN
RTHQYSEKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGI
FENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANES
GRLIDFLKDVMESMDKEEMEITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYL
IRALTLNTMTKDAERGKLKRRAIATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGN
EKKAKLANVVRKMMTNSQDTELSFTITGDNTKWNENQNPRMFLAMITYITKNQPEWFR
NILSIAPIMFSNKMARLGKGYMFESKRMKLRTQIPAEMLASIDLKYFNESTRKKIEKI
RPLLIDGTASLSPGMMMGMFNMLSTVLGVSVLNLGQKKYTKTTYWWDGLQSSDDFALI
VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYGFVANFSME
LPSFGVSGINESADMSIGVTVIKNNMINNDLGPATAQMALQLFIKDYRYTYRCHRGDT
QIQTRRSFELKKLWDQTQSRAGLLVSDGGPNLYNIRNLHIPEVCLKWELMDENYRGRL
CNPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAVATTHSWNPKRNRSILNTSQRGI
LEDEQMYQKCCNLFEKFFPSSSYRRPIGISSMVEAMVSRARIDARIDFESGRIKKEEF
SEIMKICSTIEELRRQK"
misc_feature 25..2244
/gene="PB1"
/locus_tag="FLUAVH3N2_s2p1"
/note="Influenza RNA-dependent RNA polymerase subunit PB1;
Region: Flu_PB1; pfam00602"
/db_xref="CDD:395479"
gene 119..391
/gene="PB1-F2"
/locus_tag="FLUAVH3N2_s2p2"
/db_xref="GeneID:3655160"
CDS 119..391
/gene="PB1-F2"
/locus_tag="FLUAVH3N2_s2p2"
/codon_start=1
/product="PB1-F2 protein"
/protein_id="YP_308848.1"
/db_xref="GeneID:3655160"
/translation="MEQEQDTPWTQSTEHTNIQRRGSGRQIQKLGHPNSTQLMDHYLR
IMSQVDMHKQTVSWRLWPSLKNPTQVSLRTHALKQWKSFNKQGWTN"
misc_feature 119..376
/gene="PB1-F2"
/locus_tag="FLUAVH3N2_s2p2"
/note="Influenza A Proapoptotic protein; Region: PB1-F2;
pfam11986"
/db_xref="CDD:288812"
ORIGIN
1 agcaaaagca ggcaaaccat ttgaatggat gtcaatccga ctctactgtt cctaaaggtt
61 ccagcgcaaa atgccataag caccacattc ccttatactg gagatcctcc atacagccat
121 ggaacaggaa caggatacac catggacaca gtcaacagaa cacaccaata ttcagagaag
181 gggaagtgga cgacaaatac agaaactggg gcaccccaac tcaacccaat tgatggacca
241 ctacctgagg ataatgagcc aagtggatat gcacaaacag actgtgtcct ggaggctatg
301 gccttccttg aagaatccca cccaggtatc tttgagaact catgccttga aacaatggaa
361 gtcgttcaac aaacaagggt ggacaaacta acccaaggcc gccagactta tgattggaca
421 ttaaacagaa atcaaccggc agcaactgca ttagccaaca ccatagaagt ttttagatcg
481 aatggactaa cagccaatga atcaggaagg ctaatagatt tcctcaagga tgtgatggaa
541 tcaatggata aagaggaaat ggagataaca acacactttc aaagaaaaag gagagtaaga
601 gacaacatga ccaagaaaat ggtcacacaa agaacaatag ggaagaaaaa acaaagagtg
661 aataagagag gctatctaat aagagctttg acattgaaca cgatgaccaa agatgcagag
721 agaggtaaat taaaaagaag ggctattgca acacccggga tgcaaattag agggttcgtg
781 tacttcgttg aaactttagc tagaagcatt tgcgaaaagc ttgaacagtc tggacttccg
841 gttgggggta atgaaaagaa ggccaaactg gcaaatgttg tgagaaaaat gatgactaat
901 tcacaagaca ctgagctttc tttcacaatc actggggaca acactaagtg gaatgaaaat
961 caaaaccctc gaatgttttt ggcgatgatt acatatatca caaaaaatca acctgagtgg
1021 ttcagaaaca tcctgagcat cgcaccaata atgttctcaa acaaaatggc aagactagga
1081 aaaggataca tgttcgagag taagagaatg aagctccgaa cacaaatacc cgcagaaatg
1141 ctagcaagca ttgacctgaa gtatttcaat gaatcaacaa ggaagaaaat tgagaaaata
1201 aggcctcttc taatagatgg cacagcatca ttgagccctg ggatgatgat gggcatgttc
1261 aacatgctaa gtacggtttt aggagtctcg gtactgaatc ttgggcaaaa gaaatacacc
1321 aagacaacat actggtggga tgggctccaa tcctccgacg attttgccct catagtgaat
1381 gcaccaaatc atgagggaat acaagcagga gtggatagat tctacaggac ctgcaagtta
1441 gtgggaatca acatgagcaa aaagaagtcc tatataaata aaacagggac atttgaattc
1501 acaagctttt tttatcgata tggatttgtg gctaatttta gcatggagct tcccagtttt
1561 ggagtgtctg gaataaacga gtcagctgat atgagtattg gagtaacagt gataaagaac
1621 aacatgataa acaatgacct tgggccagca acagcccaga tggctctcca attgttcatc
1681 aaagactaca gatatacata taggtgccat agaggagaca cacaaattca gacgagaaga
1741 tcattcgagc taaagaagct gtgggatcaa acccaatcaa gggcaggact attggtatca
1801 gatgggggac caaacttata caatatccgg aaccttcaca tccctgaagt ctgcttaaag
1861 tgggagctaa tggatgagaa ttatcgggga agactttgta accccctgaa tccctttgtc
1921 agccataaag aaattgagtc tgtaaacaat gctgtagtga tgccagccca cggtccagcc
1981 aaaagtatgg aatatgatgc cgttgcaact acacactcct ggaatcccaa gaggaaccgc
2041 tctattctaa acactagcca aaggggaatt cttgaggatg aacagatgta ccaaaagtgc
2101 tgcaacttgt tcgagaaatt tttccctagt agttcatata ggagaccgat tggaatttct
2161 agcatggtgg aggccatggt gtctagggcc cggattgatg ccagaattga cttcgagtct
2221 ggacggatta agaaggaaga gttctctgag atcatgaaga tctgttccac cattgaagaa
2281 ctcagacggc aaaaataatg aatttagctt gtccttcatg aaaaaatgcc ttgtttctac
2341 t
//
