LOCUS NC_008499 35595 bp DNA circular CON 11-SEP-2023
DEFINITION Levilactobacillus brevis ATCC 367 plasmid 2, complete sequence.
ACCESSION NC_008499
VERSION NC_008499.1
DBLINK BioProject: PRJNA224116
BioSample: SAMN02598532
Assembly: GCF_000014465.1
KEYWORDS RefSeq.
SOURCE Levilactobacillus brevis ATCC 367
ORGANISM Levilactobacillus brevis ATCC 367
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae;
Levilactobacillus.
REFERENCE 1 (bases 1 to 35595)
AUTHORS Makarova,K., Slesarev,A., Wolf,Y., Sorokin,A., Mirkin,B.,
Koonin,E., Pavlov,A., Pavlova,N., Karamychev,V., Polouchine,N.,
Shakhova,V., Grigoriev,I., Lou,Y., Rohksar,D., Lucas,S., Huang,K.,
Goodstein,D.M., Hawkins,T., Plengvidhya,V., Welker,D., Hughes,J.,
Goh,Y., Benson,A., Baldwin,K., Lee,J.H., Diaz-Muniz,I., Dosti,B.,
Smeianov,V., Wechter,W., Barabote,R., Lorca,G., Altermann,E.,
Barrangou,R., Ganesan,B., Xie,Y., Rawsthorne,H., Tamir,D.,
Parker,C., Breidt,F., Broadbent,J., Hutkins,R., O'Sullivan,D.,
Steele,J., Unlu,G., Saier,M., Klaenhammer,T., Richardson,P.,
Kozyavkin,S., Weimer,B. and Mills,D.
TITLE Comparative genomics of the lactic acid bacteria
JOURNAL Proc Natl Acad Sci U S A 103 (42), 15611-15616 (2006)
PUBMED 17030793
REFERENCE 2 (bases 1 to 35595)
AUTHORS Lucas,S., Copeland,A., Detter,J.C., Glavina del Rio,T., Pitluck,S.,
Grigoriev,I., Rokhsar,D., Slesarev,A., Pavlov,A., Pavlova,N.,
Karamychev,V., Polouchine,N., Shakhova,V., Kozyavkin,S.,
Makarova,K., Koonin,E., Mills,D.A. and Richardson,P.
CONSRTM US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria
Genome Consortium and Fidelity Systems Inc.
TITLE Direct Submission
JOURNAL Submitted (22-MAY-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT REFSEQ INFORMATION: The reference sequence is identical to
CP000418.1.
URL -- http://www.jgi.doe.gov
JGI Project ID: 2662178
Source DNA and bacteria available from Milton Saier
(msaier@ucsd.edu)
Bacteria also available from ATCC: ATCC 367
Contacts: Milton Saier (msaier@ucsd.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Annotation done by Kira Makarova and Eugene Koonin
Finishing done by Fidelity Systems Inc. (Gaithersburg)
http://www.fidelitysystems.com
Project Information available at:
http://genome.jgi-psf.org/mic_home.html
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them.
(http://www.genome.gov/page.cfm?pageID=10506376).
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Date :: 09/11/2023 00:59:27
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.6
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA
Genes (total) :: 2,336
CDSs (total) :: 2,254
Genes (coding) :: 2,212
CDSs (with protein) :: 2,212
Genes (RNA) :: 82
rRNAs :: 5, 5, 5 (5S, 16S, 23S)
complete rRNAs :: 5, 5, 5 (5S, 16S, 23S)
tRNAs :: 64
ncRNAs :: 3
Pseudo Genes (total) :: 42
CDSs (without protein) :: 42
Pseudo Genes (ambiguous residues) :: 0 of 42
Pseudo Genes (frameshifted) :: 20 of 42
Pseudo Genes (incomplete) :: 16 of 42
Pseudo Genes (internal stop) :: 9 of 42
Pseudo Genes (multiple problems) :: 3 of 42
CRISPR Arrays :: 2
##Genome-Annotation-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..35595
/organism="Levilactobacillus brevis ATCC 367"
/mol_type="genomic DNA"
/strain="ATCC 367"
/db_xref="ATCC:367"
/db_xref="taxon:387344"
/plasmid="2"
gene complement(481..693)
/locus_tag="LVIS_RS22915"
/old_locus_tag="LVIS_B01"
CDS complement(481..693)
/locus_tag="LVIS_RS22915"
/old_locus_tag="LVIS_B01"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_010620841.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_011668991.1"
/translation="MLGVIKLDEKKVLKPIDEMLADPWQVDIQELFEAFVNEPGEIKR
NLYDSLYTYILQKRQENIINRPSFVI"
gene 1072..3132
/gene="mobQ"
/locus_tag="LVIS_RS22920"
/old_locus_tag="LVIS_B02"
CDS 1072..3132
/gene="mobQ"
/locus_tag="LVIS_RS22920"
/old_locus_tag="LVIS_B02"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_003603791.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="MobQ family relaxase"
/protein_id="WP_011668992.1"
/translation="MAIFHMSFQNISAGKGRSAIAGAAYRSGEKLFDQKEGRSYFYAR
SVMPESFILTPKNAPKWASDREQLWNEVEKKDRKSNSRYAKEFNVALPIELSTDEQKE
LLTKYVQDNFVDQGMVADVAIHRDHPDNPHAHVMLTNRPFNPDGTWGLKAKTQYIKDE
NGKQLLTKSGFPKQRKIWLVDWDKKEKINEWRHNWATSVNQSLAQKNIPDRISEKSFV
DQGIQETPTQHEGINSQRQNRKAFNQQVRAQRSTQAKYHNINEKIRNHEHFDALTDEL
SFSEKHTISHLSQQLKTYVDLEHLDDKQRMLFNWKNSLLIKHAIGEDVTKQLLTIDQQ
TTSLAQANQLLNKVVDRATKKLYPELDFERTTAAERRELIKETNSEQTIFKDSELTER
LAGIRNDLLTQQLLTFTKRPYVSWKLVNQQAQTIEKQLTTVLAKHGHKLDDLKHIDRG
MLAAYEPNELEFISKAVKDLRVIREVKAVVQTQYDSILTTAFPDSDLDKLEPIDKEQI
YTAAVYYDPELKPLSASDLSQLQQQPPVVFASQQHQAGLNYLLGKIELKDIQDHRLQR
VLKHDGTRQLFIGECGQDPKLDHQQIEMVQARLKQQATRFDQYKQAQVKDYQAINYHP
TSPKNYLMNILDEALMTILYAKNTDYLRKQQLRGLKETEWEMTKKQRQHQTRNRHEDG
GMHL"
gene 3316..4440
/locus_tag="LVIS_RS22925"
/old_locus_tag="LVIS_B03"
/pseudo
CDS 3316..4440
/locus_tag="LVIS_RS22925"
/old_locus_tag="LVIS_B03"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002346505.1"
/note="internal stop; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="hypothetical protein"
gene complement(4596..4685)
/locus_tag="LVIS_RS23575"
CDS complement(4596..4685)
/locus_tag="LVIS_RS23575"
/inference="COORDINATES: protein motif:HMM:NF028245.3"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="putative holin-like toxin"
/protein_id="WP_072672334.1"
/translation="MSVFQTLSLMLLFAMFILALLTYIDKRNK"
gene complement(4872..>5015)
/locus_tag="LVIS_RS23315"
/pseudo
CDS complement(4872..>5015)
/locus_tag="LVIS_RS23315"
/inference="COORDINATES: protein motif:HMM:NF013579.3"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_process="GO:0006304 - DNA modification [Evidence IEA]"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="restriction endonuclease subunit S"
gene complement(5036..5956)
/locus_tag="LVIS_RS22930"
/old_locus_tag="LVIS_B04"
CDS complement(5036..5956)
/locus_tag="LVIS_RS22930"
/old_locus_tag="LVIS_B04"
/function="4.5 Transposon and IS"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011373852.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="IS30-like element ISLsa1 family transposase"
/protein_id="WP_011373852.1"
/translation="MGTSTLSRFQRGALAQLVNEGNKSYQVMADALGVAKATISYELD
RVKPYDPELAQQDADRKRRNCGRRSMLTAALATLITNHLRLTWSPETIAAAYNLSTAS
IYNWLNRGWLPFKLTDLPNRNVRQHRVSENRGKFTSGTSIEQRPTTVNQRLAFGHWEV
DTVLSSRSESRSCLVTFVERKTRLLWAIKAPNRTAKALNTAFGKFMGAFGPQVKSITV
DHGKEFANYQALEQDYQIKVYFCHPYSPWERGSNEYFNRRLRWFFPKKTNFSQVTTDE
ILAALELINQRPLKIHHQQTAIERFRACSD"
gene complement(6212..7165)
/locus_tag="LVIS_RS22935"
/old_locus_tag="LVIS_B05"
CDS complement(6212..7165)
/locus_tag="LVIS_RS22935"
/old_locus_tag="LVIS_B05"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_011668993.1"
/translation="MNLNGEYPAVMSEDEAFDDLKMHFGRELHNAGKFLFDGCEGFYN
LSQKYMDYGLFDILLRLSIGVERVQKIILSLSENKMNEQDKKALYTHSHQYLQAIIKK
IYSNDVNFNKEQNKFIELLGDFYKQDRYGFFHEEDKNQRSLFLANDLFRNYCHSIGLT
WFEDDNKLVQTKEKIEDVISNVITKYIDCLENISKNQNIYVTETQTEFELYIFVFHED
NVFNYFKKLEIARNELLYFLSQKSIEDEVVEDYPPLDFEISDIKDFISCRDFYRVKSD
LIEFVFNEYAENYDDKKSLKVRKEFLKYFPEDLEHLYKKIN"
gene 7692..7916
/locus_tag="LVIS_RS23685"
/old_locus_tag="LVIS_B06"
CDS 7692..7916
/locus_tag="LVIS_RS23685"
/old_locus_tag="LVIS_B06"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_011668994.1"
/translation="MNQKLEIIEHYFKLSDLASSDHQALNGLINLFSNDAVVEGASGI
VADNPTKIASFFENFFKDNQELRHLCRIIR"
gene 8156..8740
/locus_tag="LVIS_RS22945"
/old_locus_tag="LVIS_B07"
CDS 8156..8740
/locus_tag="LVIS_RS22945"
/old_locus_tag="LVIS_B07"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_014567995.1"
/GO_function="GO:0000150 - DNA strand exchange activity
[Evidence IEA]"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_process="GO:0006310 - DNA recombination [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="recombinase family protein"
/protein_id="WP_011668995.1"
/translation="MAKIGYARVSSKEQHLDRQLAALKGVDKLFTDKLSGANTNRPEL
QKMLAYIREGDIVLVTELDRLGRNNQDLTKIMNTLQNRGATLDVLNLPSMTGIADPNL
RQLMTNLIIELYKYQAESERKRIIERQQQGIALAKQQGKYHGRKPQYAKDDPRLQHAF
KLYQTGMSDVDVARNTGIKRTTFIRYRKKFNIQR"
gene 9100..10305
/locus_tag="LVIS_RS22950"
/old_locus_tag="LVIS_B08"
CDS 9100..10305
/locus_tag="LVIS_RS22950"
/old_locus_tag="LVIS_B08"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002825823.1"
/GO_function="GO:0016491 - oxidoreductase activity
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="FAD-dependent oxidoreductase"
/protein_id="WP_011668996.1"
/translation="MSDLDQTNSYRYVIVGGGVVAGYAIKGIRQEDSEGEILIISQEA
DVPYERPALSKKLWLDDEFTEENIQIGAENYPNVTFKFKTTVTAINRQDKVITLADSE
QIKYEQLLLATGGEPRQIQGPSDPHVLVFRQWSDYRKLRKFSGPNKRVVIIGGGYVGT
ELASSLTQNETEVTMIFPEKALGEGKFPESIRTEYEATFKRNGVTLMSGQFVQSYQRQ
GDHLILLTKDGTVIAADTIIVGLGVTPRISLAEDSCLDLADGGVKVNEYLNTSDPAIW
SAGDIASYPDHILGRQRIEHVDHARLSGELVGRNMAGAHMSYQHTPYFYSMIFDISWQ
AIGNIDPKLQLIFDRRTHGSLVYFIDTDKLVGVLVWNVKVNLDDVRALLANAPATDDL
VGSIREKKA"
gene complement(10465..10683)
/locus_tag="LVIS_RS23690"
CDS complement(10465..10683)
/locus_tag="LVIS_RS23690"
/inference="COORDINATES: protein motif:HMM:NF025063.3"
/GO_process="GO:0015074 - DNA integration [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="IS3 family transposase"
/protein_id="WP_225364051.1"
/translation="MSRKGNCHDNAPIESFFHLYKTECLAGFSPCKGLAELKAVSLEY
VNWFNYRRISSKIKGMSPCEYREHTLAA"
gene complement(11370..11828)
/locus_tag="LVIS_RS22960"
CDS complement(11370..11828)
/locus_tag="LVIS_RS22960"
/inference="COORDINATES: protein motif:HMM:NF013677.3"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - DNA transposition [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="helix-turn-helix domain-containing protein"
/protein_id="WP_125643189.1"
/translation="MINEHLSDGTSGAELARNHQLPKRQVNRWLQQYHLNGIETLKRY
KTRRKFSAEFKWYVINYYQTHDESLAEVAGKYNVLACQISVWRKTLIRDGYSSLEPHP
KGRSTKTKRSKKQIRQLEKQSEIERLRSEIAQKNQEFYDTKLENDILKNQ"
gene complement(12745..13179)
/locus_tag="LVIS_RS23330"
/pseudo
CDS complement(12745..13179)
/locus_tag="LVIS_RS23330"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_016111970.1"
/note="internal stop; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="DDE-type integrase/transposase/recombinase"
gene 13454..14830
/locus_tag="LVIS_RS22965"
/old_locus_tag="LVIS_B09"
CDS 13454..14830
/locus_tag="LVIS_RS22965"
/old_locus_tag="LVIS_B09"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011668997.1"
/GO_function="GO:0016491 - oxidoreductase activity
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="FAD-dependent oxidoreductase"
/protein_id="WP_011668997.1"
/translation="MSKTKVIVVGASHGGHQSVLELTHKYSNLDIKLFEAGDFISFMS
CGMELYLENSVTSINDVRNFKPADLEKFGTEVYANHEVTKINPENKQVTVKDLRSGKI
QSYDYDKLILSSGVTPNDLPVPGHELKNVYSMRGKDWAEKIKAKLSDPDVKNITVIGA
GYIGVEAAEASIKAGKNVTLIDMINRPLGNYLDTELTDILSKELTSKGVQVVTGSKIE
CYEGTESVSAVKTNDAEYPSDLIIQAVGVKPNTDWLKGTVELDKRGWIKTDKYLRTNL
PDVYAIGDAVLAYSIPAQRNMPIALATVARREARYVVEHIFENTPSMPFSGVVGSSAL
SVFDYHFATSGLNMTTAQKADIKINTSFYKDTLRPAYVPMEKGNTEVYVELDYNPNTH
QLLGGAVLSTYDITAQGNVISLAIQQGLKLEDLAEADFFFQPGFDRQWSLLNLAAQRA
LGELEFTK"
gene <15056..>15196
/locus_tag="LVIS_RS23335"
/pseudo
CDS <15056..>15196
/locus_tag="LVIS_RS23335"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_003680034.1"
/GO_function="GO:0000150 - DNA strand exchange activity
[Evidence IEA]"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_process="GO:0006310 - DNA recombination [Evidence
IEA]"
/note="incomplete; partial in the middle of a contig;
missing N-terminus and C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="recombinase family protein"
gene <15196..15474
/locus_tag="LVIS_RS22970"
/pseudo
CDS <15196..15474
/locus_tag="LVIS_RS22970"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_007370289.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="gluconate transporter"
gene complement(15588..16508)
/locus_tag="LVIS_RS22975"
/old_locus_tag="LVIS_B10"
CDS complement(15588..16508)
/locus_tag="LVIS_RS22975"
/old_locus_tag="LVIS_B10"
/function="4.5 Transposon and IS"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011373852.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="IS30-like element ISLsa1 family transposase"
/protein_id="WP_011373852.1"
/translation="MGTSTLSRFQRGALAQLVNEGNKSYQVMADALGVAKATISYELD
RVKPYDPELAQQDADRKRRNCGRRSMLTAALATLITNHLRLTWSPETIAAAYNLSTAS
IYNWLNRGWLPFKLTDLPNRNVRQHRVSENRGKFTSGTSIEQRPTTVNQRLAFGHWEV
DTVLSSRSESRSCLVTFVERKTRLLWAIKAPNRTAKALNTAFGKFMGAFGPQVKSITV
DHGKEFANYQALEQDYQIKVYFCHPYSPWERGSNEYFNRRLRWFFPKKTNFSQVTTDE
ILAALELINQRPLKIHHQQTAIERFRACSD"
gene complement(<16609..17577)
/locus_tag="LVIS_RS22980"
/old_locus_tag="LVIS_B11"
/pseudo
CDS complement(<16609..17577)
/locus_tag="LVIS_RS22980"
/old_locus_tag="LVIS_B11"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_010011736.1"
/GO_function="GO:0005524 - ATP binding [Evidence IEA]"
/GO_function="GO:0015446 - ATPase-coupled arsenite
transmembrane transporter activity [Evidence IEA]"
/GO_function="GO:0016887 - ATP hydrolysis activity
[Evidence IEA]"
/GO_process="GO:0071722 - detoxification of
arsenic-containing substance [Evidence IEA]"
/note="incomplete; partial in the middle of a contig;
missing C-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="TRC40/GET3/ArsA family transport-energizing
ATPase"
gene complement(17661..18023)
/gene="arsD"
/locus_tag="LVIS_RS22985"
/old_locus_tag="LVIS_B12"
CDS complement(17661..18023)
/gene="arsD"
/locus_tag="LVIS_RS22985"
/old_locus_tag="LVIS_B12"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011222021.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="arsenite efflux transporter metallochaperone
ArsD"
/protein_id="WP_011222021.1"
/translation="MKKIELFEPAMCCSTGVCGPSVDQNLLMITSAFDALQGVKTIEA
DRYNLSNNPDVFSERADILAAIKDDADAVLPITVVDGQIVKTGAYPTIDELSDYTGLV
FVPAEQTGGCCGGDGGCC"
gene complement(18010..18369)
/locus_tag="LVIS_RS22990"
CDS complement(18010..18369)
/locus_tag="LVIS_RS22990"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_003678461.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_function="GO:0003700 - DNA-binding transcription
factor activity [Evidence IEA]"
/GO_process="GO:0006355 - regulation of DNA-templated
transcription [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="metalloregulator ArsR/SmtB family transcription
factor"
/protein_id="WP_011222020.1"
/translation="MDYQKYVQMLKAMADPNRLKIIDLLSCGSLCACDILEHFDFSQP
TLSHHMKVLQNAGIVAARKEGKWQHYTLRPDFMLTFKQDTAQLLSSDDHCICHDDGCV
DCEECASGKVVMTNEKN"
gene complement(18422..19197)
/locus_tag="LVIS_RS23340"
CDS complement(join(18422..18873,18873..19197))
/locus_tag="LVIS_RS23340"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076612162.1"
/ribosomal_slippage
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="programmed frameshift; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/codon_start=1
/transl_table=11
/product="IS5-like element ISLpl3 family transposase"
/protein_id="WP_096109514.1"
/translation="MTTPKRYELEDAQWDRIKGYFPPYRTGRPSSLDNRTALNAILWL
MRSGAPWRDLPERYGSWKTVYSRFRAWVSSGLFEQVFLELIDNPDMENLSLDSTIVRA
HQKATGGKKNAECMVENQAIGLSRGGRTTKIHALVDGLGNPLGFRLTGGQVHDSQVAS
ELLEGFDISQSNIIADKAYGTAKLRQYIKDKAAVYTIPPKENTKDKWTCDYHVYCERH
LIENFFNQLKNFRRIATRYDKLAHVYLATVYIASICILLK"
gene 20567..21148
/locus_tag="LVIS_RS23005"
/old_locus_tag="LVIS_B13"
CDS 20567..21148
/locus_tag="LVIS_RS23005"
/old_locus_tag="LVIS_B13"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_015474630.1"
/GO_function="GO:0000150 - DNA strand exchange activity
[Evidence IEA]"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_process="GO:0006310 - DNA recombination [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="recombinase family protein"
/protein_id="WP_011669000.1"
/translation="MKYGYARVSTTDQKLANQIELLKLAGAEKIFQEKFTGTTTERPE
FQKLLRALKTGDTLIVTKLDRFARNTREALAIIQDLFKENVKVNILNMGLIDNTPTGQ
LVFTIFSAFAQFERDMIVTRTQEGKLYAKQHDPLFREGRPKTYSDEQIRFAYELRKQG
MTYKMIERKTGISKRTQQRRFKLIEKPSDTSKI"
gene complement(21500..21739)
/locus_tag="LVIS_RS23010"
/old_locus_tag="LVIS_B14"
CDS complement(21500..21739)
/locus_tag="LVIS_RS23010"
/old_locus_tag="LVIS_B14"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011669001.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_011669001.1"
/translation="MPEKKSLLDQIDAESQLKDGDSPFKRKEKTKPLRVRESFYNDIR
KIAFEENTKMVEILDDIIKRGLRSYKKSHPDTDYK"
gene complement(21743..22528)
/locus_tag="LVIS_RS23015"
/old_locus_tag="LVIS_B15"
CDS complement(21743..22528)
/locus_tag="LVIS_RS23015"
/old_locus_tag="LVIS_B15"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_018395828.1"
/GO_function="GO:0005524 - ATP binding [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="ParA family protein"
/protein_id="WP_011669002.1"
/translation="MTTSITIGNFKGGVGKTTTCVTFSYLLNKAHRKTLLIDFDPQGN
ASEIIEKTFPVFKQKNSKSLTDGIKNLDLSESIAHVTDYLDLMPSDWSLSLLPDMLED
YKKSDRPLFLKTLLTKIRNDYDYILIDVPPTLSAYTNNAVLASDYVIMVMQTQEQSYS
SSLKFVSYLQGLRKDYDKSFDLLGIIAYLVKKDGPVDHEVLKAANQAFGKALFHGNVF
QRERVKRFGKSGIKDEDMWDKRALYMYQVVLDEALSRINLLEE"
gene 23787..24245
/locus_tag="LVIS_RS23565"
/old_locus_tag="LVIS_B16"
CDS 23787..24245
/locus_tag="LVIS_RS23565"
/old_locus_tag="LVIS_B16"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_011669003.1"
/translation="MKIKSVLSMGLVCAGLTVGGFTYINASAKYVGHNSTPTELRGTW
YRYEGHNKWDTYKITKKSVKYNGHLLYSTGKGGSKKLFIKHSGDTYMLNGHFKYDYQT
TGTYWLSHQKVNGHRVLKNYHLMGQYNVFTKNKLKHNYSYHKDSLKDIGR"
gene 25261..25728
/locus_tag="LVIS_RS23030"
/old_locus_tag="LVIS_B17"
CDS 25261..25728
/locus_tag="LVIS_RS23030"
/old_locus_tag="LVIS_B17"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_010008913.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="CinA family protein"
/protein_id="WP_041816491.1"
/translation="MDIPTLAKYLAKRKLTLTSAESLTSGTFQSQLAATPQASQIYPG
GFITYATTAKTKLLGVPAALIAKYGVVSPEVAKSMAQQARKIAGTDFALAFTGVAGPD
KLEGVMVGTVCIGLANPETTLAKTYYFPGEPESVMTQSCQAGIDLLVQYLQKY"
gene complement(25994..26272)
/locus_tag="LVIS_RS23035"
/old_locus_tag="LVIS_B18"
CDS complement(25994..26272)
/locus_tag="LVIS_RS23035"
/old_locus_tag="LVIS_B18"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_003603789.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_011669004.1"
/translation="MPNQYEKLIEQQARLKQKIEREDFKLRQSKYYENRQARKARSRR
LIQKGALLEKYFQANNLSVEQTEELLKTFADYVNAHKPDKLKNDKPNN"
gene complement(26294..26514)
/locus_tag="LVIS_RS23040"
/pseudo
CDS complement(26294..26514)
/locus_tag="LVIS_RS23040"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_013729135.1"
/note="frameshifted; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="hypothetical protein"
gene complement(26781..27140)
/locus_tag="LVIS_RS23045"
CDS complement(26781..27140)
/locus_tag="LVIS_RS23045"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002340715.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_041816492.1"
/translation="MDLDFETNKYDLFDDWHQNKTKQAFTQKLQQQAQLEKTQLPQLL
SREDLKIRWQMNSRQSVHQVASKPDFPQPVFAFNHGKTPLYLATEIQIFEINHPWVIT
PSARLAYSHWILRNVID"
gene complement(27153..27740)
/locus_tag="LVIS_RS23050"
/old_locus_tag="LVIS_B19"
CDS complement(27153..27740)
/locus_tag="LVIS_RS23050"
/old_locus_tag="LVIS_B19"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_005917937.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="site-specific integrase"
/protein_id="WP_011669005.1"
/translation="MQQIVLPIKDSNVLTEVQDTLLHNFRAGRRNYTIFQVGKATLLR
VSDVMRLRWSDVFNENGTVRQNALIHDKKTGKANLLYLKPVQADLLSYQTWLQANHLV
SDWLFPSIQNPDRHITEKQFYKIMSKVGDLLEINYLGTHTMRKTGAYRVYTQTNYNIG
LVMHLLNHSSEAMTLAYLGLDQASTETMLDKIDFG"
gene 27819..28100
/locus_tag="LVIS_RS23055"
/old_locus_tag="LVIS_B20"
CDS 27819..28100
/locus_tag="LVIS_RS23055"
/old_locus_tag="LVIS_B20"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_003586674.1"
/GO_process="GO:0008219 - cell death [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type II toxin-antitoxin system
prevent-host-death family antitoxin"
/protein_id="WP_011669006.1"
/translation="MTLALTQSDFRANLKKYLDQVNDEDETVYIARSNSRAVAIVSQE
KMDWLERALKAKEGSLDYAIARDQLIKRHVLPDDEIVESNDDYWGQFKQ"
gene 28097..28453
/locus_tag="LVIS_RS23060"
/old_locus_tag="LVIS_B21"
CDS 28097..28453
/locus_tag="LVIS_RS23060"
/old_locus_tag="LVIS_B21"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002834562.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type II toxin-antitoxin system YafQ family
toxin"
/protein_id="WP_011669007.1"
/translation="MKKLRFKPRATFNADLKRLASLDKTIIDEVRAAVDLLLEQQQLP
PEFEDHELNRRMSGYNEFHLRDTPKNKTPSETNDVLVVYTIDKDELVLIGIRVGSHER
LFPGQNRAKRYRKNDK"
gene complement(28724..29434)
/locus_tag="LVIS_RS23065"
/old_locus_tag="LVIS_B22"
CDS complement(28724..29434)
/locus_tag="LVIS_RS23065"
/old_locus_tag="LVIS_B22"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_013437563.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="N-6 DNA methylase"
/protein_id="WP_011669008.1"
/translation="MDNERLIKSSSRVKAHGEVFTPKRIVTLMLDQPELQEPLHSLSA
TFLEPSAGEGAFLVELLKQKMAVALSKSTSATTYSRNCLIALSSLYGIEYLEDNVEML
VMNMITTFNQLYVQDITNFAKKPNQHVLESAKVIIRTNMAQGDTLKYVNADGKPILLS
EWKQVDGKANLVQRTEYTFESIVNESGPTNTVAGETEEMDLFAGSGFFEEKPKAKLHR
YKACRWTDIYKQEIENLP"
gene complement(29434..33876)
/locus_tag="LVIS_RS23070"
/old_locus_tag="LVIS_B23"
CDS complement(29434..33876)
/locus_tag="LVIS_RS23070"
/old_locus_tag="LVIS_B23"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_003620569.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_function="GO:0003824 - catalytic activity [Evidence
IEA]"
/GO_process="GO:0006304 - DNA modification [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="Eco57I restriction-modification methylase
domain-containing protein"
/protein_id="WP_011669009.1"
/translation="MKSIFEFLKADPLTADYFPSATQAEKSYALSLYSGEETSIRVIA
ENIARDIADQQFLNVSDQDTFNDVLRALKYDTNIDHDALELFYDLKQSGNQAAHQLAV
MTVSKTDKETGLRDLKRLYKLLAWFVNTFYDQTIDINAFHEPKKEDYIYTATLTPSAA
ERNLIYIQSVKMENGHFLDYIGSEKIGKASVTDLEADMSENSNYLRQTAQKRINQYME
TAGVPSKLEWAELAYRKNGEPHWFTDKDVHRVLERSKIERSPNLAGQEWFKTDLATAR
KAIKAVKNNQSVIDTDNNEDQKPKIVLRPEQLEAVKKTKKAFKNDKYSNMLWNAKMRF
GKTLSALQLIKDEGYKHVLIMTHRPAVDESWFEDFAKIGMPEAGYLYGSKNQGATFES
LRTGSKPFVYFASLQNLSGSTMIGGKVKDKNRELFSEDWDLVIIDEAHEGTQTELAQQ
VLNQVQGPKTKLLELSGTPFNILDQYEDDQVYTWDYTMEQRAKQQWEIDHPHEPNPYA
GLPRVNMFTFNTDDKFKNPKFSQVGGKSFNFKEFFKVNDQGEFIYENYVRQFLRNITT
PSKHTSYPFSTKQFRDQLRHTLWLMPGVKEAGAMERLLKQDPVLGEINGYKIINVVKD
IKGEDKGITDQTDVDRVKSAIGNDPASTKTITLTVRKLTTGITIKPWTGVIFLSNTNS
AMQYLQAAFRAQTPYSDPHFGTKIDCFIFDFAPDRALTIMAESAQMNSGVGKRTTSVQ
KQRMSDLLNFLPIIGEQGNQMKPFHVDSMLKQIKKVYAEKAVKSGFEDDSLYSDELLM
IKEADLEDFKDLKTIVGKTKREKTKVKVDINDQGLTDEQYDEAIKGQKKPKKERSPEE
QAAIDQMNAMKKQRKTLISILRSISIRIPLMIYGMDVDLAKDISINTFVDKVDEQSWK
EFMPKGVNKALFLRFIKYYDPQVFLEAGQIIRQKVKELDNADPIERIEKLTAILGTFH
NPDKETVLTPWRVVNMHLGKTVGGLSFFDKDYQYNTEDGESANHWISTDYTDQVFNPD
THILEINSKTGTYPLYMAASLYWKEFQKLNEQTAGKFTLENELFIWQKILRENIFMIA
KTPMAKSIAVRTLCGFQDFDTNIEYIDRIVNAIKKDVDAEVKNIKERFGIMKFDVVIG
NPPYQEESKGDSSSQKPIFNYFMDLSYGLADKAVLITPAKFLSNAGGTPKSWNEKMLH
DPHLKVIYFEKKSANIFPRTDIKGGVVVTLRDETQNFGGIGVFTGYSELDSILKKVEP
STSQSLAEIAFSRTSYKFTDALHEDYPDAISHLSVGHKYDVASNIFDSLPFVFFDKKP
DDGNEYIQLIGRQNNRRCYKWIQRKYILEHPNLDYYKVILPKSNGSGAIGEVLSTPLV
GTPLVGHTETFMSFGAFNTDDEAEALLKYIKTKFARTMLGVLKVTQDNPVATWKLVPL
QDFTNQSDIDWSQSVDGVNKQLYKKYGIEEDEIDFIESKVQEMD"
gene complement(33949..34428)
/locus_tag="LVIS_RS23075"
/old_locus_tag="LVIS_B24"
CDS complement(33949..34428)
/locus_tag="LVIS_RS23075"
/old_locus_tag="LVIS_B24"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_002302544.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DUF536 domain-containing protein"
/protein_id="WP_011669010.1"
/translation="MPKTIRELADEFDVSKQAIRKKLDANFRANYVQTVTRNGVQTLV
ITNSGYLLLKQHFSSGNNQKPDGGTFTSNTGNRNQDTIKLLNQQLTIKDSQIKEKDAQ
LKSMQKLLDQSQQLQLMAEKKIEEFKSITLKKDDFTPSNPESEDNTSNTKNAWWHFW"
gene complement(34421..35356)
/locus_tag="LVIS_RS23080"
/old_locus_tag="LVIS_B25"
CDS complement(34421..35356)
/locus_tag="LVIS_RS23080"
/old_locus_tag="LVIS_B25"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_016526818.1"
/GO_function="GO:0003887 - DNA-directed DNA polymerase
activity [Evidence IEA]"
/GO_process="GO:0006270 - DNA replication initiation
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="replication initiation protein"
/protein_id="WP_011669011.1"
/translation="MSNELIKYDPELNTIPLRKFTPIEMNLFFSIISRMRDKGDQTVR
FSFEQLKDLSNYKPTANNRFEDDIQRTYEKLMGLHFGRRSKSGLNREMFVMFTKFSIV
GEADSPYIDVEVYKDALPLLNNLDTWVRYALAEFRDLRSSYAKTAFRLLKGFRTTGYA
FLSKEDFFELLDIPKSYWKKSGDIDRYVIKPIKEELTPLFRGLAIRKKYGKGRGKPVI
GYSFTWKPEKKGANDFSQGKLQDERQKLFNIQHNSELTEQEKWRAIDKVKGLTLGSTE
KQALADKQAEHDKKIRDQARQEALAELRKEFGNHA"
CONTIG join(CP000418.1:1..35595)
//
