LOCUS NC_010402 9661 bp DNA circular CON 16-JUL-2023
DEFINITION Acinetobacter baumannii AYE plasmid p2ABAYE, complete sequence.
ACCESSION NC_010402
VERSION NC_010402.1
DBLINK BioProject: PRJNA224116
BioSample: SAMEA3138279
Assembly: GCF_000069245.1
KEYWORDS RefSeq.
SOURCE Acinetobacter baumannii AYE
ORGANISM Acinetobacter baumannii AYE
Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
complex.
REFERENCE 1 (bases 1 to 9661)
AUTHORS Vallenet,D., Nordmann,P., Barbe,V., Poirel,L., Mangenot,S.,
Bataille,E., Dossat,C., Gas,S., Kreimeyer,A., Lenoble,P., Oztas,S.,
Poulain,J., Segurens,B., Robert,C., Abergel,C., Claverie,J.M.,
Raoult,D., Medigue,C., Weissenbach,J. and Cruveiller,S.
TITLE Comparative analysis of Acinetobacters: three genomes for three
lifestyles
JOURNAL PLoS One 3 (3), e1805 (2008)
PUBMED 18350144
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 9661)
AUTHORS Genoscope -,C.E.A.
TITLE Direct Submission
JOURNAL Submitted (25-FEB-2008) Genoscope - Centre National de Sequencage :
BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr
- Web : www.genoscope.cns.fr)
COMMENT REFSEQ INFORMATION: The reference sequence is identical to
CU459138.1.
Annotation data relative to BLAST similarities, COG assignations,
enzymatic function prediction (PRIAM software), TMHMM and SignalP
predictions, and synteny results (Syntonizer software) are
available in BaumannoScope database via the MaGe annotation system
http://www.genoscope.cns.fr/agc/mage/baumannoscope.
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Date :: 07/16/2023 10:30:02
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.5
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA
Genes (total) :: 3,909
CDSs (total) :: 3,815
Genes (coding) :: 3,700
CDSs (with protein) :: 3,700
Genes (RNA) :: 94
rRNAs :: 6, 6, 6 (5S, 16S, 23S)
complete rRNAs :: 6, 6, 6 (5S, 16S, 23S)
tRNAs :: 72
ncRNAs :: 4
Pseudo Genes (total) :: 115
CDSs (without protein) :: 115
Pseudo Genes (ambiguous residues) :: 0 of 115
Pseudo Genes (frameshifted) :: 46 of 115
Pseudo Genes (incomplete) :: 65 of 115
Pseudo Genes (internal stop) :: 27 of 115
Pseudo Genes (multiple problems) :: 20 of 115
CRISPR Arrays :: 1
##Genome-Annotation-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..9661
/organism="Acinetobacter baumannii AYE"
/mol_type="genomic DNA"
/strain="AYE"
/db_xref="taxon:509173"
/plasmid="p2ABAYE"
gene 662..1612
/gene="repM"
/locus_tag="ABAYE_RS00040"
/old_locus_tag="p2ABAYE0001"
CDS 662..1612
/gene="repM"
/locus_tag="ABAYE_RS00040"
/old_locus_tag="p2ABAYE0001"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_004786597.1"
/GO_function="GO:0003887 - DNA-directed DNA polymerase
activity [Evidence IEA]"
/GO_process="GO:0006270 - DNA replication initiation
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="replication initiation protein RepM"
/protein_id="WP_001205343.1"
/translation="MRDLVVKDNALINASYNLDLVEQRLILLAIVEARESGKGINAND
PLEVHADSYINQFGVHRNTAYQALKDACKDLFARQFSYQEKKANGNIRNVMSRWVSQI
AYNDNEATVDLIFAPAVVPFITRLEEQFTKYELQQVSSLSSAYAIRLYELLIQWRSTG
KTPTIELQEFRKKLGVLDNEYLRMAHLKERVLELSIKQINEHTDITVKYEQHKRGRSI
SGFSFTFKQKKKDSPSIERDPNTLELFSKMTDAQRHMFANKLSELPEMGRYSQGTESY
QQFAVRIAEMLQDPAQFKELYPYLKKVGYMPSNKKDTVNG"
gene 1605..2180
/locus_tag="ABAYE_RS00045"
/old_locus_tag="p2ABAYE0002"
CDS 1605..2180
/locus_tag="ABAYE_RS00045"
/old_locus_tag="p2ABAYE0002"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_005102333.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="plasmid replication DNA-binding protein"
/protein_id="WP_001096616.1"
/translation="MAKLSLSEVSKKFHVDRSTIYRAVRNGRLSRSSDGQFDLAEVIR
CFGEPEQTSQKIESSKQEGDESTKKLIAHLENEVKKYQEREERLMQQIDRMQTLIELK
SVAPATAAPHQDATACDTKMPQHATTQQDTDNKKNNELNIAENVAVPQQETTAYHTQT
LQHATLQSVAVPQHKKRGLFGRVLNAVFDND"
gene 2200..2343
/locus_tag="ABAYE_RS20490"
/old_locus_tag="p2ABAYE0003"
CDS 2200..2343
/locus_tag="ABAYE_RS20490"
/old_locus_tag="p2ABAYE0003"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_004786602.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_001125246.1"
/translation="MPKLKDIALGIIVAPLLIPIMLIASYQDKKALKKELDECQKEKD
QAS"
gene complement(2822..3892)
/locus_tag="ABAYE_RS00050"
/old_locus_tag="p2ABAYE0004"
CDS complement(2822..3892)
/locus_tag="ABAYE_RS00050"
/old_locus_tag="p2ABAYE0004"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000646535.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="zinc-dependent alcohol dehydrogenase family
protein"
/protein_id="WP_000646533.1"
/translation="MKAMVYYGDHDIRFEERKKPELIDPTDAIIKMTKTTICGTDLGI
YKGKNPEIEQKEQEKNGSFNGRILGHEGIGIVEQIGSSVKNIKVGDKVIVSCVSRCGT
CENCAKQLYSHCRNDGGWIMGYMIDGTQAEYVRTPFADTSLYVLPEGLNEDVAVLLSD
ALPTAHEIGVQNGDIKPGDTVAIVGAGPVGMSALLTAQFYSPSQIIMIDMDENRLAMA
KELGATDTINSGTEDAIARVMELTNQRGVDCAIEAVGIEPTWDICQNIVKEGGHLANV
GVHGKSVNFSLEKLWIKNLTITTGLVNANTTGMLLKSCCSGKLPMEKLATHHFKFNEI
EKAYDVFINAAKEKAMKVIIDF"
gene 4352..4639
/locus_tag="ABAYE_RS00055"
/old_locus_tag="p2ABAYE0006"
CDS 4352..4639
/locus_tag="ABAYE_RS00055"
/old_locus_tag="p2ABAYE0006"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_019383542.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="BrnT family toxin"
/protein_id="WP_000438826.1"
/translation="MEQYFEWDEAKNRKNQKKHDISFETASLVFEDPLRISIQDRHTN
GEERWQTIGRVKGVLMLLVAHTIFDEDDCEIIRIISARQVTKAERNKYEHG"
gene 4626..4940
/locus_tag="ABAYE_RS00060"
/old_locus_tag="p2ABAYE0007"
CDS 4626..4940
/locus_tag="ABAYE_RS00060"
/old_locus_tag="p2ABAYE0007"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_006582675.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="BrnA antitoxin family protein"
/protein_id="WP_001983304.1"
/translation="MSMVRYSHKELNEKFGEKQDAEIQRLLAKGTVPDDQLDLSDIPE
ITDWSNAVRQNQFYRPVKQQTSIRLDADVLAWFKAQGKGYQTRMNEILRDAMLKELKN
HQ"
gene 5068..7479
/gene="znuD2"
/locus_tag="ABAYE_RS00065"
/old_locus_tag="p2ABAYE0008"
CDS 5068..7479
/gene="znuD2"
/locus_tag="ABAYE_RS00065"
/old_locus_tag="p2ABAYE0008"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000932945.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="TonB-dependent receptor ZnuD2"
/protein_id="WP_000932953.1"
/translation="MLNKSKLFLALITLGASKILLAAEGPVTTLNTIVLTAQSDELGS
ELLGKSLNVSNQFIDTSKLKQRSTTLGDALGTELGIHSNQYGGGASTPIIRGQEGKRI
KVLQNNADVLDMSNMSPDHAVTVEPSLAKSIEIIRGASTLLYSSNSAAGVVNVIDYKI
PTQMPQDGLEGNTTLRFNTGSNEKLTTAGVTVGLSPHVALRAEGLYRNAGNYKTPHYQ
SSSYNSLEDLENQNSIYKNLKYLPESWAESRVGTLGLSWIDDNTYLGVSYTHRHDEYG
LPAHSHLYEGCGASAIGIDSRISGLKNYLLYYPQLMDEQDINYINPRPDCHQHNHIHE
TNFSHNAPYIDLNTRRYDVRGEFTQPFTGIDKIRTSLSYIDYFHNELEGDKITNFFKN
TGKVGRIELSHQPLGELTGILGLQYLEQDNSALSPVHSQEGHTTYLDNQQLLNRNVTK
NFSVFGLEKYNWNDFTFELGARIEKQKVSMDYDIEKIKDSMKPWPNKYNSPYVEKNNK
IRAQNLKSILEAVQPNKETAFSYAGTVHWRFAPNYILSLTGTHQERLPNAQEMYTHGM
HLATNSFEIGNRFLRKEKSNNLEISLAYKDDLLDYQISTYYYDFDNYIYLQTLNEVLG
TTKVRDQHTLRINHYSQSAANFYGLEGNIGYQFNSVYHGSLFGDYVKGRLTNLPDAVI
AYDIWNREPTLAPQKDRYTPRLPPARLGTRLKADFDESLKGEIEYYRVFKQDNISKFE
QVTSGYNMLNMTLAYKNKLSHTEYDLFFKANNLLDQKVYAHETFLPYIPQIGRNFSLG
LNLNF"
gene 7784..8245
/locus_tag="ABAYE_RS00070"
/old_locus_tag="p2ABAYE0009"
CDS 7784..8245
/locus_tag="ABAYE_RS00070"
/old_locus_tag="p2ABAYE0009"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_004781077.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DIP1984 family protein"
/protein_id="WP_000761346.1"
/translation="MKLAEALLLRSDQQKKIISLKQRINANVLVQDGDQPSEDPNELL
KQVFSLIQEFQKLSYAIHETNALTKLNDGRSLLALLTLRDEFVEQHKTLTAAISNTSR
ESDRYSTREIKWHKVIPVSSLQKQADDISLKLRDLNVLIQSTNWKIDLIEA"
gene complement(8568..8741)
/locus_tag="ABAYE_RS20495"
/old_locus_tag="p2ABAYE0010"
CDS complement(8568..8741)
/locus_tag="ABAYE_RS20495"
/old_locus_tag="p2ABAYE0010"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001282484.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_001282484.1"
/translation="MSDNIIQLSKPCTLCENRQNVQLFAGLMLCGSCQENIRLTNPSM
FSANDEIEQKAQN"
gene complement(8741..9112)
/locus_tag="ABAYE_RS00075"
/old_locus_tag="p2ABAYE0011"
CDS complement(8741..9112)
/locus_tag="ABAYE_RS00075"
/old_locus_tag="p2ABAYE0011"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000504218.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000504218.1"
/translation="MGEKVKTYAVRLDPQVAEFYDQLANSEGIRTSKLFSKILTNDFQ
SIAVKQQADRIEDLVNRLEKRIDDFEEDNNFSEKYYEDFSGLYFMMLWLLMKNGASKD
EVRMIQAKGYSYADDNYKRVK"
CONTIG join(CU459138.1:1..9661)
//
