LOCUS NC_017209 14860 bp DNA circular CON 07-SEP-2023
DEFINITION Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT14,
complete sequence.
ACCESSION NC_017209
VERSION NC_017209.1
DBLINK BioProject: PRJNA224116
BioSample: SAMN02603315
Assembly: GCF_000193355.1
KEYWORDS RefSeq.
SOURCE Bacillus thuringiensis serovar chinensis CT-43
ORGANISM Bacillus thuringiensis serovar chinensis CT-43
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus;
Bacillus cereus group.
REFERENCE 1 (bases 1 to 14860)
AUTHORS He,J., Wang,J., Yin,W., Shao,X., Zheng,H., Li,M., Zhao,Y., Sun,M.,
Wang,S. and Yu,Z.
TITLE Complete genome sequence of Bacillus thuringiensis subsp. chinensis
strain CT-43
JOURNAL J Bacteriol 193 (13), 3407-3408 (2011)
PUBMED 21551307
REFERENCE 2 (bases 1 to 14860)
AUTHORS Shao,X., He,J., Zheng,H., Li,M., Zhang,Q., Li,L., Wang,S. and Yu,Z.
TITLE Direct Submission
JOURNAL Submitted (03-FEB-2010) State Key Laboratory of Agricultural
Microbiology, Huazhong Agricultural University, 1 Shizishan Road,
Wuhan, Hubei 430070, P. R. China
COMMENT REFSEQ INFORMATION: The reference sequence is identical to
CP001909.1.
Contact Pro. Ziniu Yu (yz41@mail.hzau.edu.cn) for information about
this strain.
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Date :: 09/06/2023 01:59:30
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.6
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA
Genes (total) :: 6,409
CDSs (total) :: 6,279
Genes (coding) :: 5,995
CDSs (with protein) :: 5,995
Genes (RNA) :: 130
rRNAs :: 13, 13, 13 (5S, 16S, 23S)
complete rRNAs :: 13, 13, 13 (5S, 16S, 23S)
tRNAs :: 86
ncRNAs :: 5
Pseudo Genes (total) :: 284
CDSs (without protein) :: 284
Pseudo Genes (ambiguous residues) :: 0 of 284
Pseudo Genes (frameshifted) :: 180 of 284
Pseudo Genes (incomplete) :: 114 of 284
Pseudo Genes (internal stop) :: 48 of 284
Pseudo Genes (multiple problems) :: 46 of 284
##Genome-Annotation-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..14860
/organism="Bacillus thuringiensis serovar chinensis CT-43"
/mol_type="genomic DNA"
/strain="CT-43"
/serovar="chinensis"
/db_xref="taxon:541229"
/plasmid="pCT14"
gene complement(25..1449)
/locus_tag="CT43_RS28575"
/old_locus_tag="CT43_P14001"
CDS complement(25..1449)
/locus_tag="CT43_RS28575"
/old_locus_tag="CT43_P14001"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_016090439.1"
/GO_function="GO:0005515 - protein binding [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="fibronectin type III domain-containing protein"
/protein_id="WP_158306161.1"
/translation="MACSKWKMRMKKFLLVVPVLLGILFVGDTSVFAQGKDVLSGRVG
KAQYGSSYITSLTDGNLKTNDTLSNGEVIIDLDSPVRVSGFRFTKVGGSSNRMDVYFY
TEGATLKREYRNTDSGYLQAVDIKGVKKIGLKNMSNGDYFTLAEVNLYEYESVPPSDI
TDLKENIKHDSVEFTYKNPKSNFSHLRIYRDGQVLASDVKEEKFTDKGLTPETEHTYK
FVSVSPDGLESKGIEKKIKTVKEPLPDEIKDLQEDEITHTYVKFSYKFPKNNFDHVKI
YRDDKVIADNVNVEEFIDKGLKGSTEYTYKFVSVSFTGLESNGIVKKVKTDEEPNLNK
PFKPSNFDVTPKDGSLVVNLLSQNLGVPIKGYHIFIDGVKVNDSLVTSRSYAVKGLQN
GQTYGVQIKAVSKWNIESDLSNVVNGIPKVPVIPEVTFSFGLGALVDGITNWFLGIWP
IVAFSIAIPLAFIVAFNTKKLFMR"
gene complement(1419..2819)
/locus_tag="CT43_RS28580"
/old_locus_tag="CT43_P14002"
CDS complement(1419..2819)
/locus_tag="CT43_RS28580"
/old_locus_tag="CT43_P14002"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_015386301.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000757868.1"
/translation="MKKVSIIFLCVFCIVSHTIPVFADTPSFQLLGSKGVSIENRGLV
GGKYSLVLRVNDAEDVVTFQLSELMLVNDCSFNLGKAKWTRPSQEKNEFEINWEMNGT
YAFYIFVNGKVKGYARFKLTGFPKNGEGGGTTQYTGNMAKYYELPPENFDPNDFADYD
NKLDGVCTNEKLPDKPHGSGDIEEPKEDNKPPVDGGGGSDKAVKEALEKIVSAVNEIS
KNTGETAKNTGEIAKNTGEIKKNTDEIAKNTKEIADAVKDIRDNLKIPDDMDLSIKPV
LPEDIKPDKPKQPDKPFEDKQEHFKEGEQEKPPDKLPVAPEPAECWGDVCKDKDNQKE
EDMKKEKDMDKEEPMKPDKPMEKEDMKPDKPMTPDKPLEKEDMKPDKPMTPDKPLEKE
DMKPDKPMTPDKPLEKENMKPDKPMTPDKPMDREGEMKKDNDMKQDKPMTPWEEMKPS
DEGSELCWHVVNGKCG"
gene complement(2926..3084)
/locus_tag="CT43_RS34220"
/old_locus_tag="CT43_P14003"
CDS complement(2926..3084)
/locus_tag="CT43_RS34220"
/old_locus_tag="CT43_P14003"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000425806.1"
/translation="MEMPKITLTYNLADVANGLTNWLGAYWPIIAFSVAIPLTFLVAF
NTKDLFTR"
gene complement(3105..3257)
/locus_tag="CT43_RS34225"
CDS complement(3105..3257)
/locus_tag="CT43_RS34225"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001113828.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_001113829.1"
/translation="MPEFGFRPSMSQLFGNFHMNWSTMMPLLVILFGVLFGFFVAHLV
KDKFDD"
gene complement(3918..4181)
/locus_tag="CT43_RS28590"
/old_locus_tag="CT43_P14005"
CDS complement(3918..4181)
/locus_tag="CT43_RS28590"
/old_locus_tag="CT43_P14005"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001123562.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_001135382.1"
/translation="MPQAIIEGQYLSSSIKKSSFNGVEKSFVQLDVYQPESTDSEKTV
IVKCDDLELINQFKDTKMGMPIKAKVSINAYQNKAYFKLVNLA"
gene complement(4310..4468)
/locus_tag="CT43_RS34660"
/old_locus_tag="CT43_P14006"
CDS complement(4310..4468)
/locus_tag="CT43_RS34660"
/old_locus_tag="CT43_P14006"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000532851.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000533375.1"
/translation="MGRNRIDPSEKKIKITGIAIKQKYIDLVKKEENSSQFVEDAIVE
HLKKNKKI"
gene complement(4619..5659)
/locus_tag="CT43_RS28595"
/old_locus_tag="CT43_P14007"
CDS complement(4619..5659)
/locus_tag="CT43_RS28595"
/old_locus_tag="CT43_P14007"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001085408.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_process="GO:0006260 - DNA replication [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="protein rep"
/protein_id="WP_001085406.1"
/translation="MAKKNQDEITGKLQPKKKQNIKIYEFIEKKMSESGRELFKSCST
FNEFVATKDKKKKKRVKGNDCKNRFCPICAWRKAGKDAVKIATMMEAIKIEEKKEFLF
LTLTTPNIKADMVKSEIDRFNKAFNKLFKRRNIQRSIKGYIRKLEMTYDKERFITKGM
YKDRKVYYDKRRLKVDDHNLNYDTYNPHFHVLLCVNKSYFTDKRYYISQKEWLEMWRE
VTDMPEITQVHIQKVELIREGNAVAEVAKYSAKDYEMSVSQDVFDVFYLALKGRQLIV
YGGLLKDYAKKYEDGELDKYKNKDKNEYYYRLLAIWNKDLMKFEQEYQELTESEKQEY
NGHLIDEVDVEA"
gene complement(6353..7552)
/locus_tag="CT43_RS28600"
/old_locus_tag="CT43_P14008"
CDS complement(6353..7552)
/locus_tag="CT43_RS28600"
/old_locus_tag="CT43_P14008"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000071621.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_function="GO:0003916 - DNA topoisomerase activity
[Evidence IEA]"
/GO_process="GO:0006270 - DNA replication initiation
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="replication initiation factor domain-containing
protein"
/protein_id="WP_223697959.1"
/translation="MRNEEPPSSNTGVPGCFDIYTIPSLDWVQVTFKSVQNSQKNARK
IVSKISSFFGVDEFLFEHFDEGLHGYKKSYKFLGQNTFQLLFDAPSSMGIHLILTGSM
LKMLRSDYGKGDIQLLKFLSSISKEFHFSRVDVAKDDTSGSVSIKKIARYIKDGNLTT
RFRGGHQIKKFKLVGVDDEEDKLQYVPDGETWYLGSRSGTQFRFYDKKAQMNADDLFH
WTRCELQLVDDAATNFVKNVINLDKHEFEKFCYSVFLTYVDFKKTSGAKYMKNRDSAK
FWADFLDSTVDKVKLGSRKKKKSLDDINPEYLWQKLLDGDADFYYESMHQREKDEFDK
WFFEQISSVLYLRALKHEEGIEEFYKKLIHWGETRVDQKKVEAVGVQLLMSERLKRIK
EKESPID"
gene complement(7613..7891)
/locus_tag="CT43_RS28605"
/old_locus_tag="CT43_P14009"
CDS complement(7613..7891)
/locus_tag="CT43_RS28605"
/old_locus_tag="CT43_P14009"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000331888.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000331888.1"
/translation="MAYSYCVDCERVYNCEDEKCCCGSKKRSVDWEEFAFIMGYPLYP
VKKKYGVFHLDLSKRLDADALCDLKADNPELFYYEFKGWKERELKKRN"
gene complement(7905..8126)
/locus_tag="CT43_RS28610"
/old_locus_tag="CT43_P14010"
CDS complement(7905..8126)
/locus_tag="CT43_RS28610"
/old_locus_tag="CT43_P14010"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000391857.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000391857.1"
/translation="MEELLHKIIDKLDKIDKDIQEIKTDIKAHRIETDDNFIKLYHLV
EEKDIEIDVLNKRLFKNEATVERIKREKH"
gene complement(8329..8541)
/locus_tag="CT43_RS28615"
/old_locus_tag="CT43_P14011"
CDS complement(8329..8541)
/locus_tag="CT43_RS28615"
/old_locus_tag="CT43_P14011"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000216293.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000216293.1"
/translation="MTVKEKKKTWAFTFTESEIQIIDEIVDIENDRRHSIAREHNLPF
KKYNRSTFVLAMIEEKKRKYQEQGEI"
gene complement(8840..9175)
/locus_tag="CT43_RS28625"
/old_locus_tag="CT43_P14012"
CDS complement(8840..9175)
/locus_tag="CT43_RS28625"
/old_locus_tag="CT43_P14012"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000457468.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000457469.1"
/translation="MFAKYYSQDDEFMSPLQFIALGGIMSFLIKFGCISPSVNMLTLF
VTFVTCIGLCYFFLLLITKYFYRFLAKHRDNLHVYLCNKYNEKIANRIGLCIGLVYIV
GVLVICLLI"
gene complement(9187..9606)
/locus_tag="CT43_RS28630"
/old_locus_tag="CT43_P14013"
CDS complement(9187..9606)
/locus_tag="CT43_RS28630"
/old_locus_tag="CT43_P14013"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000473093.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000473093.1"
/translation="MFKKFYREYIHVLFNIVAMFFYFSWCLVGAEFNLLTLIAIGIAL
FIFVKYVSMDKKFVNENIDKLKDKKMIFRKYAISGEDIGYAVFTNFLLFILYLGISVY
FKPLSVMALLFAFIVNVSFLMLTLRIMSRLSLKNSKV"
gene complement(9618..9824)
/locus_tag="CT43_RS28635"
/old_locus_tag="CT43_P14014"
CDS complement(9618..9824)
/locus_tag="CT43_RS28635"
/old_locus_tag="CT43_P14014"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000365465.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000365510.1"
/translation="MDLPVCNEKEVTVLSKTLKYLRSDQSNQVKVHKEYLEDRGWIFD
DLTYIDSNIYVVYKKEVVKRNKAF"
gene complement(10450..10641)
/locus_tag="CT43_RS28640"
/old_locus_tag="CT43_P14015"
CDS complement(10450..10641)
/locus_tag="CT43_RS28640"
/old_locus_tag="CT43_P14015"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000511844.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000511845.1"
/translation="MGILKKKRFREEVKRINKAHGEMREFLDLLMDRYGLDEEEINNC
EVIKHHFDNLDVMFSQMAK"
gene complement(10712..11305)
/locus_tag="CT43_RS28645"
/old_locus_tag="CT43_P14016"
CDS complement(10712..11305)
/locus_tag="CT43_RS28645"
/old_locus_tag="CT43_P14016"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_003286328.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_003275677.1"
/translation="MVFEGFLGSGKTFGMSLFAKYYQEKSNCALYSNYGLIGSKPFVN
LDTFHDIAKEESSILNLDEGHIDLDARSFSSNSVKFFSQLSYYLRKLRCTLFITAPSF
DDLDSRIRGITNVLVRVSNDKKYFYYKMYDVQSKRYLKTMRIKKEKAFAIGSKVYDTT
AMVSPVQVPDKRQDFMEFLEALKSTAEEYGRQYKHSA"
gene complement(11311..11673)
/locus_tag="CT43_RS28650"
/old_locus_tag="CT43_P14017"
CDS complement(11311..11673)
/locus_tag="CT43_RS28650"
/old_locus_tag="CT43_P14017"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000116007.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000116007.1"
/translation="MSVQEMLTKDILEEEGSNETIETVQLFQFMKKHAVPLTKKQQMA
MLLLNENGLSDISLYIAGMKEEVLPLSEYHKTLEKLTLSDRIKGNAKLSHLLKANANP
SLSLSANSAKVVKGNELA"
gene complement(11687..12049)
/locus_tag="CT43_RS28655"
/old_locus_tag="CT43_P14018"
CDS complement(11687..12049)
/locus_tag="CT43_RS28655"
/old_locus_tag="CT43_P14018"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000880242.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000880242.1"
/translation="MLAKTKRKVQPQFEGHRALIIKEEGTCVVEQVISFDSEILETST
AMLPRENELRLLDDNHGYVYHIYNLEKPARIEAENLKMLRRSSALKGIFDFDTGKKPF
DIIGFMPWVIIVLLAIFK"
gene complement(12470..12730)
/locus_tag="CT43_RS28660"
/old_locus_tag="CT43_P14020"
CDS complement(12470..12730)
/locus_tag="CT43_RS28660"
/old_locus_tag="CT43_P14020"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000992628.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000992628.1"
/translation="MNALIDTIFNPVLGWLAQMAKYLSDLSVPASRPLRISDYLGVFA
YLYGWTTVITTLFALVFVYFVCYIIMTYSSLFIRFKDTVKWW"
gene complement(12730..13152)
/locus_tag="CT43_RS28665"
/old_locus_tag="CT43_P14021"
CDS complement(12730..13152)
/locus_tag="CT43_RS28665"
/old_locus_tag="CT43_P14021"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000970219.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_223697961.1"
/translation="MEKFVKFLKGGFEAVIKSLKTFIDFLATPFQYLLDFLKGIFYFI
EKLFQVVVAIIKLFVALFQFLGAVIAGFFKTLFLWVQPNFDGGNVSFPSASMKGFKVA
TDILLPTGLLTVIPAVVTCFIWYLFVKKLMDLFRGGHH"
gene complement(13152..13325)
/locus_tag="CT43_RS34230"
CDS complement(13152..13325)
/locus_tag="CT43_RS34230"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_153594908.1"
/translation="MATVLSLIQPVTTKDLIQFLQYAFHAGEDVLFLAFVLMITFSVA
ISIRRIMVGYKQS"
gene complement(13469..14587)
/locus_tag="CT43_RS28670"
/old_locus_tag="CT43_P14022"
CDS complement(13469..14587)
/locus_tag="CT43_RS28670"
/old_locus_tag="CT43_P14022"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000978856.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="RNA-guided endonuclease TnpB family protein"
/protein_id="WP_000604588.1"
/translation="MILVKKVRLKPNREQEMQLWKSTGIARWAYNWALSRQEENYKQG
GKFISDGTLRKELTQLKQTEEYAWLYDVSNNVTKQAVKDLCEAYKRFFKGVVDKPRFK
SRRHSKPSFYNDNVKLKVMKNMVLIGKVGWVKTSECIPVVNKYSNPRISFDGKYWYLA
VGIEQEIIHQELTNASIGIDVGIKELAFCSNGMKFKNINKTKVVKQVEKRLRRLQRQV
SRKYEINKEGSCFVKTSNIIKLEKKIQHLHRRLTNIRDNHIHQVTCAIVKTKPCRVVM
ETLNIKGMMKNKHLSKAIAQQKLYDFKMKMKYKCEKYGIEFVEADKWFPSSKQCSNCG
EVNKHLTLSDRTYHCKCGHHIDRDLNASINLSRYQLVN"
gene 14680..14850
/locus_tag="CT43_RS33280"
CDS 14680..14850
/locus_tag="CT43_RS33280"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001293881.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="ribbon-helix-helix domain-containing protein"
/protein_id="WP_001293881.1"
/translation="MSENRGLKTRKALSNAVRIELYKQLKELSDKTKIPMSKLLDEAI
EDLIIKRKSTNN"
CONTIG join(CP001909.1:1..14860)
//
