LOCUS NC_017907 92728 bp DNA circular CON 12-MAR-2023
DEFINITION Escherichia coli Xuzhou21 plasmid pO157, complete sequence.
ACCESSION NC_017907
VERSION NC_017907.1
DBLINK BioProject: PRJNA224116
BioSample: SAMN02603645
Assembly: GCF_000262125.1
KEYWORDS RefSeq.
SOURCE Escherichia coli Xuzhou21
ORGANISM Escherichia coli Xuzhou21
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
Enterobacteriaceae; Escherichia.
REFERENCE 1 (bases 1 to 92728)
AUTHORS Xiong,Y., Wang,P., Lan,R., Ye,C., Wang,H., Ren,J., Jing,H.,
Wang,Y., Zhou,Z., Bai,X., Cui,Z., Luo,X., Zhao,A., Wang,Y.,
Zhang,S., Sun,H., Wang,L. and Xu,J.
TITLE A novel Escherichia coli O157:H7 clone causing a major hemolytic
uremic syndrome outbreak in China
JOURNAL PLoS One 7 (4), e36144 (2012)
PUBMED 22558360
REFERENCE 2 (bases 1 to 92728)
AUTHORS Xu,J., Lan,R., Ye,C., Xiong,Y., Wang,P. and Wang,Y.
TITLE Direct Submission
JOURNAL Submitted (09-FEB-2010) National Institute for Communicable Disease
Control and Prevention, Chinese Center for Disease Control and
Prevention, P.O.Box 5, Changping, Beijing, Beijing 102206,
P.R.China
COMMENT REFSEQ INFORMATION: The reference sequence is identical to
CP001926.1.
Strain is available from National Institute for Communicable
Disease Control and Prevention, Chinese Center for Disease Control
and Prevention, China.
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Date :: 03/12/2023 12:40:48
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.4
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA
Genes (total) :: 5,479
CDSs (total) :: 5,356
Genes (coding) :: 5,087
CDSs (with protein) :: 5,087
Genes (RNA) :: 123
rRNAs :: 8, 7, 7 (5S, 16S, 23S)
complete rRNAs :: 8, 7, 7 (5S, 16S, 23S)
tRNAs :: 93
ncRNAs :: 8
Pseudo Genes (total) :: 269
CDSs (without protein) :: 269
Pseudo Genes (ambiguous residues) :: 0 of 269
Pseudo Genes (frameshifted) :: 96 of 269
Pseudo Genes (incomplete) :: 148 of 269
Pseudo Genes (internal stop) :: 65 of 269
Pseudo Genes (multiple problems) :: 35 of 269
Pseudo Genes (short protein) :: 4 of 269
CRISPR Arrays :: 1
##Genome-Annotation-Data-END##
COMPLETENESS: full length.
FEATURES Location/Qualifiers
source 1..92728
/organism="Escherichia coli Xuzhou21"
/mol_type="genomic DNA"
/strain="Xuzhou21"
/db_xref="taxon:741093"
/plasmid="pO157"
gene join(92534..92728,1..2502)
/gene="stcE"
/locus_tag="CDCO157_RS27530"
/old_locus_tag="CDCO157_A0001"
CDS join(92534..92728,1..2502)
/gene="stcE"
/locus_tag="CDCO157_RS27530"
/old_locus_tag="CDCO157_A0001"
/EC_number="3.4.24.-"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052607.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="M66 family glycomucinase StcE"
/protein_id="WP_001358886.1"
/translation="MNTKMNERWRTPMKLKYLSCTILAPLAIGVFSATAADNNSAIYF
NTSQPINDLQGSLAAEVKFAQSQILPAHPKEGDSQPHLTSLRKSLLLVRPVKADDKTP
VQVEARDDNNKILGTLTLYPPSSLPDTIYHLDGVPEGGIDFTPHNGTKKIINTVAEVN
KLSDASGSSIHSHLTNNALVEIHTANGRWVRDIYLPQGPDLEGKMVRFVSSAGYSSTV
FYGDRKVTLSVGNTLLFKYVNGQWFRSGELENNRITYAQHIWSAELPAHWIVPGLNLV
IKQGNLSGRLNDIKIGAPGELLLHTIDIGMLTTPRDRFDFAKDKEAHREYFQTIPVSR
MIVNNYAPLHLKEVMLPTGELLTDMDPGNGGWHSGTMRQRIGKELVSHGIDNANYGLN
STAGLGENSHPYVVAQLAAHNSRGNYANGIQVHGGSGGGGIVTLDSTLGNEFSHEVGH
NYGLGHYVDGFKGSVHRSAENNNSTWGWDGDKKRFIPNFYPSQTNEKSCLNNQCQEPF
DGHKFGFDAMAGGSPFSAANRFTMYTPNSSAIIQRFFENKAVFDSRSSTGFSKWNADT
QEMEPYEHTIDRAEQITASVNELSESKMAELMAEYAVVKVHMWNGNWTRNIYIPTASA
DNRGSILTINHEAGYNSYLFINGDEKVVSQGYKKSFVSDGQFWKERDVVDTREARKPE
QFGVPVTTLVGYYDPEGTLSSYIYPAMYGAYGFTYSDDSQNLSDNDCQLQVDTKEGQL
RFRLANHRANNTVMNKFHINVPTESQPTQATLVCNNKILDTKSLTPAPEGLTYTVNGQ
ALPAKENEGCIVSVNSGKRYCLPVGQRSGYSLPDWIVGQEVYVDSGAKAKVLLSDWDN
LSYNRIGEFVGNVNPADMKKVKAWNGQYLDFSKPRSMRVVYK"
gene 2589..3464
/gene="gspC"
/locus_tag="CDCO157_RS27535"
/old_locus_tag="CDCO157_A0002"
CDS 2589..3464
/gene="gspC"
/locus_tag="CDCO157_RS27535"
/old_locus_tag="CDCO157_A0002"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052608.1"
/GO_component="GO:0015627 - type II protein secretion
system complex [Evidence IEA]"
/GO_process="GO:0015628 - protein secretion by the type II
secretion system [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type II secretion system protein GspC"
/protein_id="WP_001302175.1"
/translation="MLFFLSFRGDRGLFIKDIVLKMLTPNRLLCVILLIAGYQLVSVI
HHFWLTQAASVPGLSRVSAPETAVTGDQTEERFVFTLFGRASPLSSEGRAQETMPSLS
DDLLSGEDLDVRGILYSSVAEHSVAIFAHNNRQFSLSVGEKVPSYDATISAIFSDHIV
INYQGKTVSLPLRYDNTEKKNAYDNNNLTVGDVITQDNFRVESVFDIMSFSAVTVNNT
LSGYRLIPGKHSSLFYNAGLHDNDLAVSVNGSELRDTRQAQQIMKQLPELKEIKITVE
RDGQLYDAFIAVGEN"
gene 3465..5432
/gene="etpD"
/locus_tag="CDCO157_RS27540"
/old_locus_tag="CDCO157_A0003"
CDS 3465..5432
/gene="etpD"
/locus_tag="CDCO157_RS27540"
/old_locus_tag="CDCO157_A0003"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001302177.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="variant type II secretion system secretin EtpD"
/protein_id="WP_001302177.1"
/translation="MFRKWLNGRLPVLVFTTVILGAIPGWGAEFSANFKDTDIQEFIN
TVSKNLHKTVIINPDVQGTITVRSYDMLNEEQYYQFFLSVLDVYGFAVVDMHNGILKV
VRSKDAKTSAVPVASDVSPGTGDEVVTRVVPVSNVAARDLAPLLRQLNDNAGAGSVVH
YEPSNVLLMTGRAAVMKRLMEIVERVDKVGNRSVATVPLTYASATDVARLVTELTKET
DKTAIPAWMTAKLVADERTNSVLVSGEPISQQRIISIIKQLDRQEDVQGNTKVIYLKY
AKAKDLVEVLTGISSSIENDSKKSPSTEALRKGVTIKSHEQTNALILTGAPDVIRDLE
NVISQLDIRRPQVLVEAIIAEIQDADGLNLGIQWVNKHAGVAQFTSTGLPITTMVQTR
QNEILDSDQSNALSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIVTLDNMEAT
FNVGQEVPVLSGSQTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQEVSGVA
DTAVATTTDLGATFNTRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLG
HLFRAKSEQTAKRNLMLFIRPTIIRERDGFRHASAEKYQSFNQEQVQSRGKETTALTL
NEEQLRLSPDQDDTAFRKVKAAIAAFYAQEM"
gene 5432..6937
/gene="gspE"
/locus_tag="CDCO157_RS27545"
/old_locus_tag="CDCO157_A0004"
CDS 5432..6937
/gene="gspE"
/locus_tag="CDCO157_RS27545"
/old_locus_tag="CDCO157_A0004"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052610.1"
/GO_component="GO:0015627 - type II protein secretion
system complex [Evidence IEA]"
/GO_process="GO:0015628 - protein secretion by the type II
secretion system [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type II secretion system ATPase GspE"
/protein_id="WP_000092338.1"
/translation="MSRVVQNVSESRPLLPFSFSRTQRILLLREQEGNRVFCMEDTPA
SALLEVRRVAEGPLNVTTVSAEAFEKQLVSSYQRDSDEARQMMAEIGNEMDFYTVAGE
LPDREDLLDANDDAPIIRLINAMLTEAIKEKASDIHIETYERHLQVRFRIDGVLREIL
RLHRNLASLLISRIKVMARLDIAEKRVPQDGRMVLRIGGRAVDVRVSTLPSNHGERIV
LRLLDKNSVSLDLAALGMSQQNQRHIDALIRRPHGIILVTGPTGSGKSTTLYAALSLL
NPRDRNIMTVEDPVEYELDGISQTQVNPKVDMTFARSLRAILRQDPDVVLVGEIRDGE
TAQIAVQASLTGHLVLSTLHTNSAAGALSRLQDMGIPPFLLSTSLLAVLAQRLVRTLC
PRCRQPCQVSTELAMDMDIPPETTIWQPAGCQHCSFTGYHGRTGIHELLLIDDRIRTA
IYQGEGELGITRLAGSRYLTLRGDGRQKVLAGETSWEEVVRVTESRLQEEE"
gene 6939..8162
/gene="gspF"
/locus_tag="CDCO157_RS27550"
/old_locus_tag="CDCO157_A0005"
CDS 6939..8162
/gene="gspF"
/locus_tag="CDCO157_RS27550"
/old_locus_tag="CDCO157_A0005"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_004151937.1"
/GO_component="GO:0015627 - type II protein secretion
system complex [Evidence IEA]"
/GO_process="GO:0015628 - protein secretion by the type II
secretion system [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type II secretion system inner membrane protein
GspF"
/protein_id="WP_001173152.1"
/translation="MALFHYQASDIHGRKRSGILEADSARHARQLLREQALIPVRLDE
KQVHHKHSLRSILRFRPRGGSSAELALLTRQLATLVAASLPLEEALDALLRQSEKPRQ
RNLIAAVRTKVLEGHSLAAAMGMFPGTFERLYCAMVAAGETSGRLDVVLSRLADYTEQ
RQIMRNRLLQALLYPCVLTLVAVGVIAILLTAVVPKVVEQFIHMKQTLPLSTRVLMGA
AEVSQTWGPWLLLAAALGGIAGRMILHQPSQRLAFHHLLLRLPVVGRISRGLNTARYA
RTLSILNASAVPLLQAMHISGDVLSNDWARHQLATAAELVREGVSLHQALEQTSLFPP
MMRHMIASGENSGELDSMLERAADNQDREFSTQMQLALGLFEPLLVVGMAGVVLFIVL
AILQPLLQLNNMMNM"
gene 8193..8627
/gene="gspG"
/locus_tag="CDCO157_RS27555"
/old_locus_tag="CDCO157_A0006"
CDS 8193..8627
/gene="gspG"
/locus_tag="CDCO157_RS27555"
/old_locus_tag="CDCO157_A0006"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052612.1"
/GO_component="GO:0015627 - type II protein secretion
system complex [Evidence IEA]"
/GO_process="GO:0015628 - protein secretion by the type II
secretion system [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type II secretion system major pseudopilin GspG"
/protein_id="WP_001231211.1"
/translation="MRKQHQRGFTLLEIMVVIVILGVLASLVVPNLMGNKDKADRQKV
MSDLVALESTLDMYRLDNNRYPTTEQGLRALVSKPTVQPEPRNYRQDGYIRRLPQDPW
GGDYQLLNPGQYSDIDIFSPGPDGVPNTEDDIGNWTLGNAQP"
gene 8624..9178
/gene="gspH"
/locus_tag="CDCO157_RS27560"
/old_locus_tag="CDCO157_A0007"
CDS 8624..9178
/gene="gspH"
/locus_tag="CDCO157_RS27560"
/old_locus_tag="CDCO157_A0007"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052613.1"
/GO_component="GO:0015627 - type II protein secretion
system complex [Evidence IEA]"
/GO_process="GO:0015628 - protein secretion by the type II
secretion system [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type II secretion system minor pseudopilin GspH"
/protein_id="WP_000082929.1"
/translation="MSQRGFTILEMMLILLLMGITAGLVLMSFPDSAQNHLQQQRERL
QAQLDYALDRSQQDGLLMGIQVRFDGWKFKVLQRGTAESPPTLAEGGDIWQGYVWQTW
QPRRAAMGGKLPDDVRLELQYLRGLQWMSEHDDGAEPDILLLPGGEVTPFRLLFRQVG
EEAVVGLQVDENGLMTLFEGEVSL"
gene 9193..9540
/gene="gspI"
/locus_tag="CDCO157_RS27565"
/old_locus_tag="CDCO157_A0008"
CDS 9193..9540
/gene="gspI"
/locus_tag="CDCO157_RS27565"
/old_locus_tag="CDCO157_A0008"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052614.1"
/GO_component="GO:0015627 - type II protein secretion
system complex [Evidence IEA]"
/GO_process="GO:0015628 - protein secretion by the type II
secretion system [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type II secretion system minor pseudopilin GspI"
/protein_id="WP_000173396.1"
/translation="MTLLEVIVALVVFALAGMALMQASTQQAAGIGRMEEKVLAGWLA
DNQMVQLQLEKTWPENGWGEKTISFAGTEWYLRWGGPDSDVPQPRSLEVEVRRTKEET
SALVSLRSSVVRE"
gene 9537..10136
/gene="gspJ"
/locus_tag="CDCO157_RS27570"
/old_locus_tag="CDCO157_A0009"
CDS 9537..10136
/gene="gspJ"
/locus_tag="CDCO157_RS27570"
/old_locus_tag="CDCO157_A0009"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052615.1"
/GO_component="GO:0015627 - type II protein secretion
system complex [Evidence IEA]"
/GO_process="GO:0015628 - protein secretion by the type II
secretion system [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type II secretion system minor pseudopilin GspJ"
/protein_id="WP_000082782.1"
/translation="MSQQRVKGFTLLEMLLALAVFAALSISAFQVLQGGIRAHELSRD
KVQRLAELQRGISQMERDLTQMLPRHSRGNEGLLLAAPHLLKSDDWGISFTRNSWLNP
AGMLPRPELQWVGYRLRQQKLERLSYFHVDHPSGVSPDVRVMLDGVHAFRLRFFVNGD
WQARWDSTGILPQAVEVTLVMDDFAELPRLFLVSKETAE"
gene 10133..11110
/gene="gspK"
/locus_tag="CDCO157_RS27575"
/old_locus_tag="CDCO157_A0010"
CDS 10133..11110
/gene="gspK"
/locus_tag="CDCO157_RS27575"
/old_locus_tag="CDCO157_A0010"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052616.1"
/GO_component="GO:0016020 - membrane [Evidence IEA]"
/GO_process="GO:0009306 - protein secretion [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type II secretion system minor pseudopilin GspK"
/protein_id="WP_000776550.1"
/translation="MKLREQGVALLVVLLILSLMVTIAAVIAERNGRTFLRTVAQLDQ
LQAKWDGYTAETIAKQILQRSRQESPRKTHLAQNWAQSERQFETRGGDVRGQIVDAQA
CFNLNAINYGVVDLTSIPYAARIFQQLLINLQVELLQARQVTAALRDWIDRDDKPVRG
GAEDEVYMGMEPPYLAANQPMQDVSELRLIRGIDARLYRKLLPYVCVLPTSDLSVNVN
TLLDSQAPLLAALFLTKPDSLPVTELLQRRPRTGWESVAAFLDAPPLKDIDTSAAMPV
LAVSSNYFLVRLHVRSGEHLFSQQTLMQWREERFRIIQRQYGLTMREVP"
gene 11044..12321
/gene="gspL"
/locus_tag="CDCO157_RS27580"
/old_locus_tag="CDCO157_A0011"
CDS 11044..12321
/gene="gspL"
/locus_tag="CDCO157_RS27580"
/old_locus_tag="CDCO157_A0011"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012816828.1"
/GO_component="GO:0015627 - type II protein secretion
system complex [Evidence IEA]"
/GO_process="GO:0015628 - protein secretion by the type II
secretion system [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type II secretion system protein GspL"
/protein_id="WP_011321724.1"
/translation="MEGGAFPDHSATVWINDEGGSLKKNNKHVEAGRLFLRLPEDDSE
PLLWRLIAPEETGAGSVAVGETDPQLVGLLSRYPAWVLVPSGRIAFHQVTLPHRTWRQ
RLQVLPFLLEEQLATDIEQLHFAILHQSGDRCDVAVVEKAVMHRWLAYCGQLGVREVR
LLPDVLMLPLATEGWSAVKLAGQWLFRRDRYAGMTVELSWLTHFLSLTAPPVIESYSV
PPVPCPGPKTTEWRNQPGRDLLQLVAEGDGYDGADLRQGEFARQGTWYARFRPWRYVA
GALLACVFLAGSNAGLAHYRLWQQAQFWRYESVRVYQQLFPSEKAVKDPRRQMLRHLQ
QSTGNNIPELGSVMRQLQQLLSETSTIRLQALAWDSSSQTLKIDLQAASFQALEHFQQ
IAGEKYLIQPGEIRQQPQGVESRLILRVNNERA"
gene 12308..12820
/locus_tag="CDCO157_RS27585"
/old_locus_tag="CDCO157_A0012"
CDS 12308..12820
/locus_tag="CDCO157_RS27585"
/old_locus_tag="CDCO157_A0012"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052618.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type II secretion system protein M"
/protein_id="WP_001004187.1"
/translation="MNELKKRLQYVSPRERRLLIGCVALLVVVFVYYVLWQPWLIRED
KWRTVVTREKNTVEWMKQQVPNIKRREASMPEQGEPLGLSAAVTRTSAAYGVSVTRLQ
PQGERLAVTLAPVEFNALMQWLTQLERRHRIRTMVFDVAAQGNPPGQVTVNRLVLSQD
DVNKDASLSR"
gene 12995..13711
/locus_tag="CDCO157_RS27590"
/old_locus_tag="CDCO157_A0013"
CDS 12995..13711
/locus_tag="CDCO157_RS27590"
/old_locus_tag="CDCO157_A0013"
/EC_number="3.4.23.-"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052619.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="A24 family peptidase"
/protein_id="WP_001358889.1"
/translation="MLERRWRREALTLLAHSVPESGPAFNLMIPQSHCPCCFHPLGIR
DNIPLLSYLFLKGKSRCCGERIPVYYPLVEITNSVLFILAASRFPPGLTLAAAWLFIS
MLLVLAVIDCHTALLPDVLTLPLLWLGLLFSLQRGVVTLEEAVVGAVSGYLCLWGLYW
LFRFATGREGLGYGDFKLAAALGAWMGWQALPSILLFASVSGLIVTVLLRIVTATDFT
RPLPFGPWLALSGVCHFLLM"
gene 13803..14204
/gene="eptO"
/locus_tag="CDCO157_RS27595"
/old_locus_tag="CDCO157_A0014"
/gene_synonym="gspS"
CDS 13803..14204
/gene="eptO"
/locus_tag="CDCO157_RS27595"
/old_locus_tag="CDCO157_A0014"
/gene_synonym="gspS"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052620.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="GspS family T2SS pilot lipoprotein variant EptO"
/protein_id="WP_000971918.1"
/translation="MMGNILKKLNCIASLLVLVTISGCHQSPSIHKQATVPPSEQLEQ
MASIVSATRYLKMRCNRSDLPDEQSILNVANRIAIGKGWQSLTQEDIRKHSDDIYVRL
TRDSTPEYIKCREFNRRLVPFIGELLARGRG"
gene 14383..15554
/locus_tag="CDCO157_RS27605"
/old_locus_tag="CDCO157_A0016"
CDS join(14383..14632,14632..15554)
/locus_tag="CDCO157_RS27605"
/old_locus_tag="CDCO157_A0016"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076611522.1"
/ribosomal_slippage
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="programmed frameshift; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/codon_start=1
/transl_table=11
/product="IS3 family transposase"
/protein_id="WP_085949322.1"
/translation="MKKRNFSAEFKRESAQLVVDQNYTVADAAKAMDIGLSTMTRWVK
QLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEIFKKGYNRALDVRLPEQFSI
IGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHNISHGSAGA
RSIATMATLRGFRMGRWLAGRLMKELGLVSCQQPAHRYKRGGREHVTIPNHLGRQFAV
TEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTIKALKMAWEI
RSKPAGVMFHSDQGSHYTSRQFRQLLWRYQIKQSLSRRGNCWDNSPMERFFRSLKNEW
IPVTGYMNFSDAAHEITDYIVGYYNALRPHEYNGGLPPNESENRYWKNSKAVASFC"
gene 16095..16610
/gene="ehxC"
/locus_tag="CDCO157_RS27610"
/old_locus_tag="CDCO157_A0017"
/gene_synonym="hlyC"
CDS 16095..16610
/gene="ehxC"
/locus_tag="CDCO157_RS27610"
/old_locus_tag="CDCO157_A0017"
/gene_synonym="hlyC"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000839950.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="enterohemolysin-activating
lysine-acyltransferase EhxC"
/protein_id="WP_000839950.1"
/translation="MKSNAFDVMGKVAWLWACSPLHKKWPLSVFAINVIPAIQTNQFA
LLIKDELPVAFCSWASLDLECEVKYINDVTSLYAKDWMSGERKWFIDWIAPFGHNMEL
YKYMRKKYPYELFRAIRLDESSKTGKIAEFHGGGIDKKLASKIFRQYHHELMSEVKNR
QDFNFNIEKEN"
gene 16612..19608
/gene="ehxA"
/locus_tag="CDCO157_RS27615"
/old_locus_tag="CDCO157_A0018"
CDS 16612..19608
/gene="ehxA"
/locus_tag="CDCO157_RS27615"
/old_locus_tag="CDCO157_A0018"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052624.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="enterohemolysin EhxA"
/protein_id="WP_000217739.1"
/translation="MTVNKIKNIFNNATLTTKSAFNTASSSVRSAGKKLILLIPDNYE
AQGVGINELVKAADELGIEIHRTERDDTAIANQFFGAAEKVVGLTERGVAIFAPQLDK
LLQKYQKVGSKIGGTAENVGNNLGKAGTVLSALQNFTGIALSGMALDELLRKQREGED
ISQNDIAKSSIELINQLVDTVSSINSTVDSFSEQLNQLGSFLSSKPRLSSVGGKLQNL
PDLGPLGDGLDVVSGILSAVSASFILGNSDAHTGTKAAAGIELTTQVLGNVGKAVSQY
ILAQRMAQGLSTTAASAGLITSAVMLAISPLSFLAAADKFERAKQLESYSERFKKLNY
EGDALLAAFHKETGAIDAALTTINTVLSSVSAGVSAASSASLIGAPISMLVSALTGTI
SGILEASKQAMFEHVAEKFAARINEWEKEHGKNYFENGYDARHAAFLEDSLSLLADFS
RQHAVERAVAITQQHWDEKIGELAGITRNADRSQSGKAYINYLENGGLLEAQPKEFTQ
QVFDPQKGTIDLSTGNVSSVLTFITPTFTPGEEVRERKQSGKYEYMTSLIVNGKDTWS
VKGIKNHKGVYDYSKLIQFVEKNNKHYQARIISELGDKDDVVYSGAGSSEVFAGEGYD
TVSYNKTDVGKLTIDATGASKPGEYIVSKNMYGDVKVLQEVVKEQEVSVGKRTEKIQY
RDFEFRTGGIPYDVIDNLHSVEELIGGKHDDEFKGGKFNDIFHGADGNDYIEGNYGND
RLYGDDGDDYISGGQGDDQLFGGSGNDKLSGGDGNNYLTGGSGNDELQAHGAYNILSG
GTGDDKLYGGGGIDLLDGGEGNDYLNGGFGNDIYVYGQNYGHHTIADEGGKGDRLHLS
DISFDDIAFKRVGNDLIMNKAINGVLSFNESNDVNGITFKNWFAKDASGADNHLVEVI
TDKDGREIKVDKIPHNNNERSGYIKASNIASEKNMVNITSVANDINKIISSVSGFDSG
DERLASLYNLSLHQNNTHSTTLTTTV"
gene 19658..21778
/gene="ehxB"
/locus_tag="CDCO157_RS27620"
/old_locus_tag="CDCO157_A0019"
/gene_synonym="hlyB"
CDS 19658..21778
/gene="ehxB"
/locus_tag="CDCO157_RS27620"
/old_locus_tag="CDCO157_A0019"
/gene_synonym="hlyB"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052625.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="enterohemolysin T1SS ABC transporter
permease/ATPase EhxB"
/protein_id="WP_000987091.1"
/translation="MMSKCSSHNSLYALILLAQYHNITVNAETIRHQYNTHTQDFGVT
EWLLAAKSIGLKAKYVEKHFSRLSIISLPALIWRDDGKHYILSRITKDSSRYLVYDPE
QHQSLTFSRDEFEKLYQGKVILVTSRATVVGELAKFDFSWFIPSVVKYRRILLEVLTV
SAFIQFLALITPLFFQVVMDKVLVHRGFSTLNIITIAFIIVILFEVILTGARTYIFSH
TTSRIDVELGAKLFRHLLALPVSYFENRRVGETVARVRELEQIRNFLTGQALTSVLDL
FFSVIFFCVMWYYSPQLTLVILLSLPCYVIWSLFISPLLRRRLDDKFLRNAENQAFLV
ETVTAINTIKSMAVSPQMIATWDKQLAGYVASSFRVNLVAMTGQQGIQLIQKSVMVIS
LWMGAHLVISGEISIGQLIAFNMLAGQVIAPVIRLAHLWQDFQQVGISVERLGDVLNT
PVEKKSGRNILPEIQGDIEFKNVRFRYSSDGNVILNNINLYISKGDVIGIVGRSGSGK
STLTKLLQRFYIPETGQILIDGHDLSLADPEWLRRQIGVVLQENILLNRSIIDNITLA
SPAVSMEQAIEAARLAGAHDFIRELKEGYNTIVGEQGVGLSGGQRQRIAIARALVTNP
RILIFDEATSALDYESENIIMKNMSRICKNRTVIIIAHRLSTVKNANRIIVMDNGFIS
EDGTHKELISKKDSLYAYLYQLQA"
gene 21782..23221
/gene="ehxD"
/locus_tag="CDCO157_RS27625"
/old_locus_tag="CDCO157_A0020"
CDS 21782..23221
/gene="ehxD"
/locus_tag="CDCO157_RS27625"
/old_locus_tag="CDCO157_A0020"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052626.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="enterohemolysin T1SS ABC transporter subunit
EhxD"
/protein_id="WP_001213545.1"
/translation="MRFYMKGLWDLVCRYKTVFSDVWKIRHTLDAPVREKDEYAFLPA
HLELIETPVSRRSHFVVWSILLFVIISLLLSVLGKVEVVSVANGKFTHSGRSKEIKPI
ENAIVEKIMVKDGSFVKKNDPLVELTVPGVESDILKSEASLLYEKTEQYRYAILSESI
QRNELPEIRITDFPGGEDNAGGEHFQRVSSLIKEQFMTWQNRKNQKQLTLNKKIVERD
AALARVSLYEHQVSQEGRKLNDFKYLLNKKAVSQHSVMEQENSYIQAKNEHAVWLAQV
SQLEKEIELVREELALETNIFRSEIIEKHRKSTDNIVLLEHELEKNRQRKASSFIKAP
VSGTVQELNIHTEGGVVTTAETLMIIVPDNDILEVTASVLNKDIGFIQPGQEVVIKVD
AYPYTRHGYLTGKVKNITADSVSVPDTGLVFNVIISVDRNDIQGERKKIPVTAGMTVM
AEIKTGVRSVISYLLSPLKETINESLRER"
gene 23288..23482
/locus_tag="CDCO157_RS33360"
/old_locus_tag="CDCO157_A0021"
CDS 23288..23482
/locus_tag="CDCO157_RS33360"
/old_locus_tag="CDCO157_A0021"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_958720.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_001303402.1"
/translation="MLFKQTMIQFLSLKIVNGMDSIKLLDKVIIYQQQNEQLYPAQEH
LLLQLCMRVTKKLTDILMPP"
gene 23512..23796
/locus_tag="CDCO157_RS33365"
/old_locus_tag="CDCO157_A0022"
CDS 23512..23796
/locus_tag="CDCO157_RS33365"
/old_locus_tag="CDCO157_A0022"
/inference="COORDINATES: protein motif:HMM:NF024212.2"
/GO_function="GO:0003700 - DNA-binding transcription
factor activity [Evidence IEA]"
/GO_process="GO:0006355 - regulation of DNA-templated
transcription [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="MarR family transcriptional regulator"
/protein_id="WP_001358890.1"
/translation="MLLALLSSTDNFCLSSTELSERLDVSRTYITRACDSLEKFGFIK
RMESKEDRRSKNIYLTSDGNLYLQRTTRIYGRYLKKYGATLQMMKSKHLK"
gene 23965..24195
/locus_tag="CDCO157_RS31735"
/old_locus_tag="CDCO157_A0023"
CDS 23965..24195
/locus_tag="CDCO157_RS31735"
/old_locus_tag="CDCO157_A0023"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_958721.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_010891288.1"
/translation="MWILNVFQVHKSVRIYIAHFSVFNCHLHPSIDRSLASWHYPNSP
KNGKPALSPRHDWLNTGSLLQNVPLRIWFYPQ"
gene 24316..25056
/locus_tag="CDCO157_RS27645"
/old_locus_tag="CDCO157_A0024"
CDS 24316..25056
/locus_tag="CDCO157_RS27645"
/old_locus_tag="CDCO157_A0024"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052628.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_process="GO:0006310 - DNA recombination [Evidence
IEA]"
/GO_process="GO:0015074 - DNA integration [Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="tyrosine-type recombinase/integrase"
/protein_id="WP_001066920.1"
/translation="MNNVIPLQNSPERVFLLPIAPGVDFATALSLRRMATSTGATPAY
LLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGARPFVRILSEK
VRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAV
RRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFAL
DMAATLAVPFTGDGRDAAEILRTLPPLR"
gene complement(25341..26318)
/locus_tag="CDCO157_RS27650"
/old_locus_tag="CDCO157_A0026"
CDS complement(25341..26318)
/locus_tag="CDCO157_RS27650"
/old_locus_tag="CDCO157_A0026"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052630.2"
/GO_function="GO:0003887 - DNA-directed DNA polymerase
activity [Evidence IEA]"
/GO_process="GO:0006270 - DNA replication initiation
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="RepB family plasmid replication initiator
protein"
/protein_id="WP_000361615.1"
/translation="MDKSSGELVTLTPNNNNTVQPVALMRLGVFVPTLKSLKNSKKNT
LSRTDATEELTRLSLARAEGFDKVEITGPRLDMDNDFKTWVGIIHSFARHNVIGDKVE
LPFVEFAKLCGIPSSQSSRRLRERISPSLKRIAGTVISFSRTDEKHTREYITHLVQSA
YYDTERDIVQLQADPRLFELYQFDRKVLLQLKAINALKRRESAQALYTFIESLPRDPA
PVSLARLRARLNLKSPVFSQNQTVRRAMEQLREIGYLDYTEIQRGRTKLFCIHYRRPR
LKAPNDESKENPLPPSPAEKVSPEMAEKLALLEKLGITLDDLEKLFKSR"
gene complement(26726..26926)
/locus_tag="CDCO157_RS27660"
/old_locus_tag="CDCO157_A0028"
CDS complement(26726..26926)
/locus_tag="CDCO157_RS27660"
/old_locus_tag="CDCO157_A0028"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_958722.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000708307.1"
/translation="MKIYHYTDLNGLKGIIESGSLWATHFSFLNDSNELTHGMNCLEN
ALQYLRDDFNPKTLKFIEQAPL"
gene complement(26923..27543)
/locus_tag="CDCO157_RS27665"
/old_locus_tag="CDCO157_A0029"
CDS complement(26923..27543)
/locus_tag="CDCO157_RS27665"
/old_locus_tag="CDCO157_A0029"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052632.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_001248529.1"
/translation="MRQERVLRIKAFRRALELGGGERADGCRHFPRWKTELRNFPHSS
CDLASNTLAYYLKERERCHPCIIFMEGNAGFHEAENSTVHGHVIVLLDGEYIDLTLDQ
FDEYPDYIPYEPVESDGQIGKLLRNIMKHEDPVKTRQIDLDGGEELYAWLRDTADEVL
AADPEWQARERSIEEAREAAITVFPFLSDVQKTECEQGPDSQEAAR"
gene complement(27540..28223)
/locus_tag="CDCO157_RS27670"
/old_locus_tag="CDCO157_A0030"
CDS complement(27540..28223)
/locus_tag="CDCO157_RS27670"
/old_locus_tag="CDCO157_A0030"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052633.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DNA-binding protein"
/protein_id="WP_010891291.1"
/translation="MYELYCMYCVFFIPGIRWRHSLRNRSQTMTSLSPDTVRRIEDAA
AALIAAGTPNPTNEQVRQHLGGGSLSHISPVMRAFRARQREQATPLPPELAQLLTGQL
GLLWQAAVKQAEAGALAAREQADDDIARADKERDEALANVAALESELAVLREVVAERD
RLLQEVRELRAEALPLREQVARLTATGEHLAAQLQDTKAELKEAREDGRQLQTELLAL
ARQDGKVKK"
gene 28682..28900
/gene="ccdA"
/locus_tag="CDCO157_RS27680"
/old_locus_tag="CDCO157_A0031"
CDS 28682..28900
/gene="ccdA"
/locus_tag="CDCO157_RS27680"
/old_locus_tag="CDCO157_A0031"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052634.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type II toxin-antitoxin system antitoxin CcdA"
/protein_id="WP_000813634.1"
/translation="MKQRITVTVDSDSYQLLKAYDVNISGLVSTTMQNEARRLRAERW
KAENQEGMAEVARFIEMNGSFADENRDW"
gene 28902..29207
/gene="ccdB"
/locus_tag="CDCO157_RS27685"
/old_locus_tag="CDCO157_A0032"
CDS 28902..29207
/gene="ccdB"
/locus_tag="CDCO157_RS27685"
/old_locus_tag="CDCO157_A0032"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052635.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type II toxin-antitoxin system toxin CcdB"
/protein_id="WP_001159868.1"
/translation="MQFKVYTYKRESRYRLFVDVQSDIIDTPGRRMVIPLASARLLSD
KVSRELYPVVHIGDESWRMMTTDMASVPVSVIGEEVADLSHRENDIKNAINLMFWGI"
gene 29208..30014
/locus_tag="CDCO157_RS27690"
/old_locus_tag="CDCO157_A0033"
CDS 29208..30014
/locus_tag="CDCO157_RS27690"
/old_locus_tag="CDCO157_A0033"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052636.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="site-specific integrase"
/protein_id="WP_000016989.1"
/translation="MSGSVIHSQSAVMVPAVYSAGQPASLPVAIDYPAALALRQMSMV
HDELPKYLLAPEVSALLHYVPNLHRKMLLATLWNTGARINEALALTRGDFSLAPPYPF
VQLATLKQRTEKAARTAGRMPAGQQTHRLVPLSDSWYVSQLQTMVATLKIPMERRNRR
TGRTEKARIWEVTDRTVRTWIGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIP
LKVLQSLMGHKSISSKEVYTKVFALDVAARHRVQFAMPESDAVAMLKQLS"
gene complement(30737..31950)
/locus_tag="CDCO157_RS27695"
/old_locus_tag="CDCO157_A0034"
CDS complement(join(30737..31659,31659..31950))
/locus_tag="CDCO157_RS27695"
/old_locus_tag="CDCO157_A0034"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_086558238.1"
/ribosomal_slippage
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="programmed frameshift; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/codon_start=1
/transl_table=11
/product="IS3-like element IS1203 family transposase"
/protein_id="WP_162829202.1"
/translation="MTKNTRFSPEVRQRAIRMVLESQDEYDSQWAAICSIAPKIGCTP
ETLRVWVRQHERDTGGGDGGLTSAERQRLKELERENRELRRSNDILRQASAYFGEGGV
RPPLEKMMPLLDKLREQYGVGPVCSELHIAPSTYYHCQQQRHHPDKRSARAQHDDWLK
REIQRVYDENHQVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTIS
RKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYIVGWRVSSS
METTFVLDALEQALWARRPSGTIHHSDKGSQYVSLAYTERLKEAGLLASTGSTGDSYD
NAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLGRLGHTPPAEAEKA
YYASIGNDDLAA"
misc_feature complement(31553..31669)
/locus_tag="CDCO157_RS27695"
/old_locus_tag="CDCO157_A0034"
/inference="COORDINATES: nucleotide
motif:Rfam:14.4:RF01497"
/inference="COORDINATES: profile:INFERNAL:1.1.4"
/note="AL1L pseudoknot; Derived by automated computational
analysis using gene prediction method: cmsearch."
/db_xref="RFAM:RF01497"
gene 31912..32250
/locus_tag="CDCO157_RS30700"
CDS 31912..32250
/locus_tag="CDCO157_RS30700"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012439763.1"
/GO_function="GO:0003887 - DNA-directed DNA polymerase
activity [Evidence IEA]"
/GO_process="GO:0006270 - DNA replication initiation
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="RepB family plasmid replication initiator
protein"
/protein_id="WP_071525396.1"
/translation="MTDFGGKTSIFSHPVYLFLREFSLQETRGGSQYRKPDGSGIVSL
KIDWIIERYQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFS
FRDITSMTTG"
gene 32838..34004
/gene="sopA"
/locus_tag="CDCO157_RS27705"
/old_locus_tag="CDCO157_A0036"
CDS 32838..34004
/gene="sopA"
/locus_tag="CDCO157_RS27705"
/old_locus_tag="CDCO157_A0036"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052640.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="plasmid-partitioning protein SopA"
/protein_id="WP_000772446.1"
/translation="MKLMETLNQCINAGHEMTKAIAIAQFNDDSPEARKITRRWRIGE
AADLVGVSSQAIRDAEKAGRLPHPDMEIRGRVEQRVGYTIEQINHMRDVFGTRLRRAE
DVFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMYHGWVPDL
HIHAEDTLLPFYLGEKDDVTYAIKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPT
DPHLMLRLAIETVAHDYDVIVIDSAPNLGIGTINVVCAADVLIVPTPAELFDYTSALQ
FFDMLRDLLKNVDLKGFEPDVRILLTKYSNSNGSQSPWMEEQIRDAWGSMVLKNVVRE
TDEVGKGQIRMRTVFEQAIDQRSSTGAWRNALSIWEPVCNEIFDRLIKPRWEIR"
gene 34004..34975
/locus_tag="CDCO157_RS27710"
/old_locus_tag="CDCO157_A0037"
CDS 34004..34975
/locus_tag="CDCO157_RS27710"
/old_locus_tag="CDCO157_A0037"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052641.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="ParB/RepB/Spo0J family plasmid partition
protein"
/protein_id="WP_000817031.1"
/translation="MKRAPVIPKHTLNTQPVEDTSLSTPAAPMVDSLIARVGVMARGN
AITLPVCGRDVKFTLEVLRGDSVEKTSRVWSGNERDQELLTEDALDDLIPSFLLTGQQ
TPAFGRRVSGVIEIADGSRRRKAAALTESDYRVLVGELDDEQMAALSRLGNDYRPTSA
YERGQRYASRLQNEFAGNISALADAENISRKIITRCINTAKLPKSVVALFSHPGELSA
RSGDALQKAFTDKEELLKQQASNLHEQKKAGVIFEAEEVITLLTSVLKTSSASRTSLS
SRHQFAPGATVLYKGDKMVLNLDRSRVPTECIEKIEAILKELEKPAP"
gene 36275..37999
/gene="ltrA"
/locus_tag="CDCO157_RS27715"
/old_locus_tag="CDCO157_A0038"
CDS 36275..37999
/gene="ltrA"
/locus_tag="CDCO157_RS27715"
/old_locus_tag="CDCO157_A0038"
/EC_number="2.7.7.49"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052642.1"
/GO_function="GO:0003964 - RNA-directed DNA polymerase
activity [Evidence IEA]"
/GO_process="GO:0000373 - Group II intron splicing
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="group II intron reverse transcriptase/maturase"
/protein_id="WP_000138832.1"
/translation="MTEQATTCKGASLLNGDSWHSINWRQCYREVRRLQARIVKATRE
GKHGKVKSLQWILTHSFSGRAVAVRRVTENSGKRTPGVDGQTWSSPEVKFLAINLLKR
RGYKPQPLKRVYIPKSNGKSRPLGIPTMKDRAMQALYLLALEPVAEVTADQRSFGFRT
GRSTADAIAQCFCVLAQKTSAEWVLEGDIRGCFDNISHQWLIDNTSTDRQILTKWLKA
GYREKGQLFPVNSGTPQGGIISPVLANIALDGLEALLASEFKKRTVKGRLVNPKVNYV
RYADDFIITGESKELLESQVLPVVRRFMAERGLMLSPEKTKITHIEEGFDFLGQNIRK
YGGKMLIKPSKANVSSFLKKIRAVIKGNKAMDQLTLIRMLNPMIKGWAAYHQHIVAKV
AFNKVDNEIWLALWRWAVRRHPNKGKKWIRKRYFHQQGARNWSFSTATGELLANGKPQ
YANLRKAIDTPINRFKPIKIAANPFDPQWEMYFEERCADKMRHKLQGRKKLIQIWFEQ
RGRCPICDERITSDSQWQVHHIIRRVDGGSNCLSNLIMLHPMCHTLVHAKGIHVVKPA
HESGLRKA"
gene 38076..38978
/locus_tag="CDCO157_RS27720"
/old_locus_tag="CDCO157_A0039"
CDS 38076..38978
/locus_tag="CDCO157_RS27720"
/old_locus_tag="CDCO157_A0039"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052643.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DUF1281 domain-containing protein"
/protein_id="WP_000273919.1"
/translation="MYFSGEPAQIAEIKRLASGAVTPLYRRATNEGIQLFLAGSAGLL
QTTEDVRFEPCPGLTAAGRGVVSPENIAFTRWLTHLQDGVLLDEQNCLMLHELWLQSG
TGRRRWEELPDDARESITALFTPKRGDWCDIWSNEDVSVWWNRLCDNVLPEKTMPFDL
LTVLSTRLDVEVNGFNGGVLNGVPSAYHWYTEQYGVKWPCGYEVNISSQGDNFIQVDF
DTPWCQPESDVIAVLSRRFSCMLEHWYAGQGCNFCGWQRYERGELVDVLWGELEWSSP
TDDDELPEVTAPEWIVDKVAHYGG"
gene 38982..39287
/locus_tag="CDCO157_RS31740"
/old_locus_tag="CDCO157_A0040"
CDS 38982..39287
/locus_tag="CDCO157_RS31740"
/old_locus_tag="CDCO157_A0040"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052644.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_010891292.1"
/translation="MTETGGQPPVSFPVKDVAGLLFLLRRLTRRGRNAACGQCPASGR
ARDGRFYRSRLASVTVYASPSPFSDERPSSRFRGIFSPSKRRRLRYSTVGLTRYRTR"
gene 39364..40047
/locus_tag="CDCO157_RS27730"
/old_locus_tag="CDCO157_A0041"
CDS 39364..40047
/locus_tag="CDCO157_RS27730"
/old_locus_tag="CDCO157_A0041"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052645.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DNA methylase"
/protein_id="WP_000085945.1"
/translation="MSRFIQGDCVRVMATIPGNGVDFILTDPPYLVGFRDRQGRTIAG
DKTDEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYT
SKAAYVGYRHECAYILAKGRPALPQKPLPDVLGWKYSGNRHHPTEKPVTSLQPLIESF
THPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAVQRAMQQGAAN
DDWFMPEAA"
gene 40048..40269
/locus_tag="CDCO157_RS27735"
/old_locus_tag="CDCO157_A0042"
CDS 40048..40269
/locus_tag="CDCO157_RS27735"
/old_locus_tag="CDCO157_A0042"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_958723.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_001104869.1"
/translation="MNYAGHEKLRADVAEVANTMCDLRARLNDMEHRCRFDSDVLVER
LARQTLYRANRLFMEAYTEILELDACFKD"
gene 40163..40717
/locus_tag="CDCO157_RS27740"
/old_locus_tag="CDCO157_A0043"
CDS 40163..40717
/locus_tag="CDCO157_RS27740"
/old_locus_tag="CDCO157_A0043"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052646.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DUF1380 family protein"
/protein_id="WP_001358893.1"
/translation="MCLLNAWHARRCIAPIACSWRRIPKFWNWMRALKIEKETRMYGT
CETLCRELAAKYPGYTPLMLVIWSPEEIQALADGMDISLSDPEIRTVLARLEDIPEDQ
RIESGISSAAAMEIISNVSENRQVTVPAELLASLIQTAEQALWKREWAARDYGLAVPE
CVTRRQAVVNQARILLKNNTHENG"
gene 40763..41539
/locus_tag="CDCO157_RS32905"
/old_locus_tag="CDCO157_A0044"
CDS 40763..41539
/locus_tag="CDCO157_RS32905"
/old_locus_tag="CDCO157_A0044"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052647.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_001005037.1"
/translation="MNENTTLNALICRHARNLLLAQGWPEETDVDQRNPKYPGWISIY
VLLDAPRLATLLVNRHGGVLPPHLASAIQKLTGTGAELVLSGSQWQSLPVLPADGTQV
SFPYAGEWLTEDEIRAVLAAVRDAVRSVSCRVAEDTRRIRAALTTTGQTLLTRQTRRF
RLVVKESDHPCWLDEDDENLPVVLDAILNRGARFSAVEMYLVSDCIEHILSSGLACDV
LRIPDEPPRRWFDRGVLREVVREARNEIRSMADALAKIRK"
gene 41957..42382
/locus_tag="CDCO157_RS27750"
/old_locus_tag="CDCO157_A0046"
CDS 41957..42382
/locus_tag="CDCO157_RS27750"
/old_locus_tag="CDCO157_A0046"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001198918.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="antirestriction protein"
/protein_id="WP_001198930.1"
/translation="MQYAKPVTLNVEECDRLSFLPYLFGNDFLYAEAYVYALAQKMMP
EYQGGFWHFIRLPDGGGYMMPDGDRFHMVNGANWFDRTVSADACGIILTSLVINRQLW
LYHDSGDAGLTQLYRMRDAQLWRHIEFHPECNAIYAALD"
gene 42429..42851
/locus_tag="CDCO157_RS27755"
/old_locus_tag="CDCO157_A0047"
CDS 42429..42851
/locus_tag="CDCO157_RS27755"
/old_locus_tag="CDCO157_A0047"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052650.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DUF1380 family protein"
/protein_id="WP_000271685.1"
/translation="MYCTVKEIIRDVLDTDVPDSECVFAVVLTRGDVRHIAQDWNLSD
DELETVMQRLDDAFEYGADVSIVHDVVRELMEEKRASRQVTVPAVMLEKVMALAGSEM
KRLYAVGSENGGDGDAFVREEREAMDVVLQALDGEHMS"
gene 42848..43039
/locus_tag="CDCO157_RS27760"
CDS 42848..43039
/locus_tag="CDCO157_RS27760"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_016238862.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_001027495.1"
/translation="MNISTETREILRNYKAVINARRREMGQKPLTTAQIVDEICDFVA
NQQAVFLGGHYILQGSRNR"
gene complement(43009..43518)
/locus_tag="CDCO157_RS32910"
CDS complement(43009..43518)
/locus_tag="CDCO157_RS32910"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001358895.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_032245379.1"
/translation="MSRDPPQRREARFAKRRCPLHPGGLLPGCRERRPRRDRGCATGT
VAASQGFASGMEARQGGDSFAGSVHDSPPRQGDARKSHKQERNGKKRRKRKRKKKKNS
NRHGNHRKITSEKNIPDTSQTGRVTDDASAWPASLPAGVSLPGVFARADRRPPPPALY
HLFLLPCKM"
gene 44035..44265
/locus_tag="CDCO157_RS27770"
/old_locus_tag="CDCO157_A0049"
CDS 44035..44265
/locus_tag="CDCO157_RS27770"
/old_locus_tag="CDCO157_A0049"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052652.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000218642.1"
/translation="MTVSIVSPSAAAVKPRRHPRFRREDIPAPEIDPVLKAFGRHIAR
SFHRGRGVHIPAMKNTAFGQVLRTLELKRAFN"
gene 44317..45678
/locus_tag="CDCO157_RS27775"
/old_locus_tag="CDCO157_A0050"
CDS 44317..45678
/locus_tag="CDCO157_RS27775"
/old_locus_tag="CDCO157_A0050"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052653.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DUF3560 domain-containing protein"
/protein_id="WP_000199442.1"
/translation="MTSAAITMTAPEAASPVQMYRATYSPDDNKLRLYAVSRLDPETY
KKVHDAGFRWAPKQALFVAPAWTPGREDVLLSLAGEIEDEDSTLAERQEARAERFTGY
SGKRASESAQALDEVERLAAMIPPGQPILVGHHSERRARRDAQRIENGMKRAVMLFER
AEYWEERGRSALLHAKYKERPDVRWRRIKKIEADLRKAEKTIAQSQKYLTMWRAESLD
LNMAKLISSHDHISACFPLDTYPRPAEKSQYEGSRSLWSALDDDIITTEQAREIAIRC
HERQIQHQQRWVNHYQNRLNYERAMLDESGGVVTRTQDFEPGGQVFSRGEWLTIIRVN
KSNGAVSSVTTPNYSFLGYSGTMKVTPDRITDYKAPSAEEAAVASQAAKRPPVVNYPG
EGFREMTKAQWAALPRDCKAVRSVAEAEDHGAYRYRRTMDNNFRLVNVYITDMKITEI
PQK"
gene 45725..46288
/locus_tag="CDCO157_RS27780"
/old_locus_tag="CDCO157_A0051"
CDS 45725..46288
/locus_tag="CDCO157_RS27780"
/old_locus_tag="CDCO157_A0051"
/EC_number="2.1.1.-"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052654.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="class I SAM-dependent methyltransferase"
/protein_id="WP_001302171.1"
/translation="MHSQLKERIRLMRARLDNAAPVAEIRAESQLFVTPAPVCDRLVT
LAEISNRDHILEPSAGTGAILRAIRDTAPEAMCDAVEINSGLVRYLRENFNGVRVQCG
DFMEWQPVQYYSRVIINPPFSHGQDIRHILRAFSLLRPGGVLVAVCLNGPRQQEKLLP
FSDVREELPRGTFAYTDVPTMIIRLRA"
gene complement(46374..46829)
/locus_tag="CDCO157_RS27785"
/old_locus_tag="CDCO157_A0052"
CDS complement(46374..46829)
/locus_tag="CDCO157_RS27785"
/old_locus_tag="CDCO157_A0052"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052655.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_001358896.1"
/translation="MAPDTTTGRHPPQRREARFAKRRCPLHPGGLLPGCRERRPRRDR
GGATGTVAASPGFASGMEARQGGDSSAGSVHDSPPRQGDARKRHKQENNKTDSNQSSR
KKKNSSSSSSSSSSSSSSMNNNIISNRQMTGLKRQKPTAECPRNVRGGA"
gene 46899..47105
/locus_tag="CDCO157_RS32915"
CDS 46899..47105
/locus_tag="CDCO157_RS32915"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000547968.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000547965.1"
/translation="MHIPQNFLPKSRQKVLRSAPGQSFPAVAVMPLAAKVLKKVMVNT
GGNKRQVPAKRQNRGSRNSKDDGG"
gene 47131..47583
/locus_tag="CDCO157_RS27795"
/old_locus_tag="CDCO157_A0053"
CDS 47131..47583
/locus_tag="CDCO157_RS27795"
/old_locus_tag="CDCO157_A0053"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052656.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="single-stranded DNA-binding protein"
/protein_id="WP_000290823.1"
/translation="MAVRGINKVILVGRLGKDPEVRYIPNGGAVANLQVATSESWRDK
QTGEMREQTEWHRVVLFGKLAEVAGEYLRKGAQVYIEGQLRTRSWEDNGITRYVTEIL
VKTTGTMQMLVRAAGAQTQPEEGQQFSGQPQPQPPEGDDYGFSDDIPF"
gene 47640..47873
/locus_tag="CDCO157_RS27800"
/old_locus_tag="CDCO157_A0054"
CDS 47640..47873
/locus_tag="CDCO157_RS27800"
/old_locus_tag="CDCO157_A0054"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_958724.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="DUF905 family protein"
/protein_id="WP_000005995.1"
/translation="MSEYFRILQGLPDGPFTRKHAEAVAAQYRNVFIENDHGEQFRLV
VRNNGAMVWRTWNFEDGAGYWMNHVIRDFGIIK"
gene 47939..49897
/locus_tag="CDCO157_RS27805"
/old_locus_tag="CDCO157_A0055"
CDS 47939..49897
/locus_tag="CDCO157_RS27805"
/old_locus_tag="CDCO157_A0055"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052657.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="ParB/RepB/Spo0J family partition protein"
/protein_id="WP_000117168.1"
/translation="MSVTESKAKTERKSSRKPAKTQETVLSALLAQTEEVSVPLASLI
KSPLNVRTVPYSAESVSELADSIKGVGLLQNLVVHALPGDRYGVAAGGRRLAALNMLA
ERDIIPADWPVRVKVIPQELATAASMTENGHRRDMHPAEQIAGFRAMAQEGKTPAQIG
DLLGYSPRHVQRMLKLADLAPVILDALAEDRITTEHCQALALENDTARQVQVFEAACQ
SGWGGKPEVQTIRRLVTESEVAVAGNSKFRFVGADTFSPDELRTDLFSDDEGGYVDCV
ALDAALLEKLQAVAEHLREAEGWEWCAGRMEPVGFCREDAGTYRSLPEPEAVLTEAEE
ERLNELMARYDALENQCEESDLLEAEMKLMRCMAKVRAWTPEMRAGSGVVVSWRYGNV
CVQRGVQLRSEDDVADNDYRTEQVQEKASVEEISLPLLTKMSSERTLAVQAALMQQSD
KSLALLAWTLCLNVFGSGAYSNPARIRLECEHYSLTSDAPSGKEGAAFMAMMAEKARL
AALLPDGWARDMTTFLSLSQEVLLSLLSFCTACSIHGVQTREYGHTSRSPLDTLESAI
GFHMRDWWQPTKANFFGHLKKPQIIAALNEAGLSGAARDAEKMKKGDAAEHAEHHMKD
NRWVPGWMCAPRPQTDATERTDNLADAA"
gene 49952..50386
/gene="psiB"
/locus_tag="CDCO157_RS27810"
/old_locus_tag="CDCO157_A0056"
CDS 49952..50386
/gene="psiB"
/locus_tag="CDCO157_RS27810"
/old_locus_tag="CDCO157_A0056"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052658.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="conjugation system SOS inhibitor PsiB"
/protein_id="WP_000845908.1"
/translation="MKTELTLNVLHTMNAQEYEDIRAAGSDARRELTHAVMRELDAPD
NWTMNGEYGSEFGGFFPVQVRFTPAHERFHLALCSPGDVSQVWVLVLVNAGGEPFAVV
QVQRRFAPEAVSHSLALAASLDTQGYSVNDIIHILMAEGGQV"
gene 50383..51144
/locus_tag="CDCO157_RS27815"
/old_locus_tag="CDCO157_A0057"
CDS 50383..51144
/locus_tag="CDCO157_RS27815"
/old_locus_tag="CDCO157_A0057"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052659.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="plasmid SOS inhibition protein A"
/protein_id="WP_001276250.1"
/translation="MSARSQALVPLSTEQQAAWRAVAETEKRRNQGNTLAEYPYAGAF
FRCLNGSRRISLSDLRFFMPSLTAEELHGNRLQWLYAIDVLIETQGEVCLLPLPGDAA
ERLFPSVRFCVRERSRHKSALVMQKYSRQQAREAEQKARAYQALVAQAEIELAFHSPE
TVGSWYARWSDRVAEHDLETLFWQWGERFPSLAGMERWQWQDMPFWQVIAEASLAAKE
AGHAVREMERWMVPNKLREVRDAATITRIARKQPE"
gene 51318..>51467
/locus_tag="CDCO157_RS33370"
/pseudo
CDS 51318..>51467
/locus_tag="CDCO157_RS33370"
/inference="COORDINATES: protein motif:HMM:NF010277.0"
/note="incomplete; partial in the middle of a contig;
missing C-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="DUF5431 family protein"
gene 51409..51534
/locus_tag="CDCO157_RS27825"
/old_locus_tag="CDCO157_A0058"
CDS 51409..51534
/locus_tag="CDCO157_RS27825"
/old_locus_tag="CDCO157_A0058"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052660.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type I toxin-antitoxin system Hok family toxin"
/protein_id="WP_096937776.1"
/translation="MLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESGK"
gene <51668..53689
/locus_tag="CDCO157_RS27830"
/old_locus_tag="CDCO157_A0059"
/pseudo
CDS <51668..53689
/locus_tag="CDCO157_RS27830"
/old_locus_tag="CDCO157_A0059"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000991381.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="relaxase/mobilization nuclease domain-containing
protein"
gene 53757..54188
/locus_tag="CDCO157_RS27835"
/old_locus_tag="CDCO157_A0060"
CDS 53757..54188
/locus_tag="CDCO157_RS27835"
/old_locus_tag="CDCO157_A0060"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052662.1"
/GO_component="GO:0016020 - membrane [Evidence IEA]"
/GO_function="GO:0019534 - toxin transmembrane transporter
activity [Evidence IEA]"
/GO_process="GO:0043213 - bacteriocin transport [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="cell envelope integrity TolA C-terminal
domain-containing protein"
/protein_id="WP_001453090.1"
/translation="MVLRSIWVEEQYMGVKKIVILAILVSFVAGCAPLHPSNCHKTTA
LGSCSSGRWDDQDEWGEQARGIRDAINAKLDDPQKWKRKKCRLHMEFSRDGTALKIST
SNGDKAYCEAIKSAAHKAKFPAFNNPEVYRDFQKSGFDMRG"
gene complement(<54860..>55209)
/locus_tag="CDCO157_RS32630"
/old_locus_tag="CDCO157_A0061"
/pseudo
CDS complement(<54860..>55209)
/locus_tag="CDCO157_RS32630"
/old_locus_tag="CDCO157_A0061"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012477168.1"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing N-terminus and C-terminus; Derived by
automated computational analysis using gene prediction
method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS3 family transposase"
gene 55303..>55566
/locus_tag="CDCO157_RS32635"
/pseudo
CDS 55303..>55566
/locus_tag="CDCO157_RS32635"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000952428.1"
/note="incomplete; partial in the middle of a contig;
missing C-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS21 family transposase"
gene <55606..>55726
/locus_tag="CDCO157_RS32640"
/pseudo
CDS <55606..>55726
/locus_tag="CDCO157_RS32640"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000544830.1"
/GO_function="GO:0005524 - ATP binding [Evidence IEA]"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing N-terminus and C-terminus; Derived by
automated computational analysis using gene prediction
method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="ATP-binding protein"
gene <55723..55875
/locus_tag="CDCO157_RS30750"
/pseudo
CDS <55723..55875
/locus_tag="CDCO157_RS30750"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012477181.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - transposition, DNA-mediated
[Evidence IEA]"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS1 family transposase"
gene 55982..65491
/gene="toxB"
/locus_tag="CDCO157_RS27850"
/old_locus_tag="CDCO157_A0063"
CDS 55982..65491
/gene="toxB"
/locus_tag="CDCO157_RS27850"
/old_locus_tag="CDCO157_A0063"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052665.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="toxin B"
/protein_id="WP_000581721.1"
/translation="MIHPGSSLDKAINNTRVKNVSTDVKHGQIQERKRNFIYKKNDDI
SSRFKLYSSLVKQKNATEDVVLIGKMILDEVRSYRTIHNDRNIVSNSGNWKTSFLCNL
ARLLYSIFNGSNYFCSREGENNSSPSSTLLTIHQPEKQELLQQKSIKHLPTSNNIDGY
IKIRKTRGAEDQTTTITQSLIINELLNGVDRNTIPFQKISELNDIIHSYENMQIKNSR
KGIEILVKQGELLSSLINDNKGNKQLSDNASKIINLLGIEYQSHKVDIEPFIHAVWVA
GAPPDNTFSYITAFLNTYKDYTYLLWIDPNAFGAAKFSGILKNIAMNYAIMRLRRTNP
HLAEEMNEVILKIQNIQNETIEFKETRERLKELENRYKSLTSETKEKFNVFFLESMIG
MQDNYFTYCISNGISNTDDISRLDFLTNVLKLSPEVQNDFKSTVEKNKRDIDLLKNTI
SQKFGDRFQLRDINTLESFKKPQDYFFYQQEMLLRWNYAAASDQVRINILKEYGGIYT
DTDILPAYSDKVSQIINEKSDDKRFFEDLKLRRIISESILSLIKGEKYSIKHDGLDET
TLNQLNNILSEIEKLTIDDYFKPVETKVVRDTFKIFKRYQKWTENTWNIRGNNNFMLT
HKGSKCIDFILSGQKKQYLELQRIRDNISYNNLFYTTEDLKSLNNVAIGGIPAKKYLE
HGLFSEYRQDGTIPYVVSTLNISGPDMIMRQMKKYYKSLGRIGEVHIKDNKLSDVNFL
GVYASSNKDNKSFNWLNPVSVGINDITPDDESSWAVRNNDINKILFEKINCHVPEKLP
TSLYYEIDSRSFFQGWDNKSIKHVTEINKDLIKDINLLLTSSNIDVKLLIKLDRELYA
ISSKIDNPLALRSIRTLQLQLANYVTSNTFEPENTINFIYDFYRKKQDDLLSAIKLFS
RNDADTKIIVWYNSVMEKNVFLREVISCVLRSKKVDSYINENKKNLSKEDAGALRDYA
KLKMKELFSMLDDDGYKKIITTNAYIKERDKLSGIIYNIENSIISGHESFDIIRSNQH
EWGDLSTVEQFKKFEFYVKSELSSAKSIFDDIKNKYITDPETKRNVLYHQLDSDIKER
IAFLDISHYAYPGSLLEKLQLSGYVFSDINIIAEYLLASYGVSGHYSHGVVYPAPSDK
LLELLRRHTKSNSEWIEKITPYVYDILSDNVSNVLRPPLSEEQKKILNDIKLEISKSV
SEQYFMKLTEQKSSVIGIKYSVDFDRYNENLFLSLPINQNLTLPFMYRYFEMLYDIHI
GIIENKANREFIYSKFSSLNLDFLINDERVLNLEGLIKKYKYLSLSEIHRTLTNSTSF
ADISIPLLQTICPSITTIIKKTEYYGHQLTNAMTVASVVKPYDFSNLGAINSIDKSVS
DVPALHTIVEQAKYNLLSWNDFYNTHASIWDTIARQHKSTNIEFHPQSLLFDRDSKGK
CLGLSLLYLDTGGYGGGYQKLRHNIDTASTLYQTKYNDNLKLSNRDDFFLRKTQRIIT
MSNELGNNRLKNAQLEVLELKDPILTEGILYQRRISSLLITTEYHSLALQQISSFWRV
TDPNFGHCDFHSLAQALTFIKNITSNRNFSSLYGSGIVKIYFSESLNNWKYIKLPLVQ
TGSLLRDIYLTTPEKLSTSGGSLNIMGHLVPVSFIYDIGGVINGNRISESTDVKNKIR
SLKINGDILQHYINTHYLSEEQTQKIKDIVDFLGIQDNTIKVKLESDIKPISEIQQPL
HSILSRQKEHVKNLLSGLLDEFSNKLRKQGLSLKTNVLSVNNFKESKINSDTVEVTVT
DLQGRLYRVDIDTRVIGLTFKEGINSLSEALEHMNIDAIMSVIGLVQYARMIKMNDNI
SAIDHAGAVSDIKNIVDKFLGGILTLTNNRVYNPGGVSGASLEGFISSGLEVCASRMG
GTAGRYLSNVAKVIKLPLLDIGINIWSLYDSSLNHAKATTQIEYISTAIDVSFSSINT
ALSIGAIAYPPLAIAIVPITIFSHEVKNYAVYVNQINERHKLWLEAEKYLDNGSAKVL
SINKATGIIDLSNNQVLGNIYLDMRENPPILHGEKSYNSGKNIGSHPDMTDREIMESR
AYNFACTKLSDAGEPDIFGWGDKEICNSMELSESQLANGYSNRQWPSQIPVIPEGIYN
TVYLGYGETLRANTEVTLSSTGYFYEIARAYTDDELSEPLLTVCNQHSHVIGGKEPLT
IIIPAIEHGMLGSNLHMIERFKNYNFSISGGKGGIKLMVGGIGDYNIECTPGVRNIIS
FEQLSRDFNLDLDLSDGRKQNFNFHHPSGFYSGKVMSITQKGINAVVGTKLGYDKIRG
NNLDNTFSLGSGGGVIYSGGGSNTYFVPATLQDNLHIYISEKSNGNHIILGDMHSRLS
IECHFSNNEREFIKMGYYNGCDVILESDTIQKIKSFAKNITIQTADGVMANWDDKLNT
LSVYSIDMIAWRDKNKTAKEPLPVDVIQLTNWRMHNTCSLFYDKYQVDIEANKLTYTV
LFPDTELPVQLNYTSIIYGNHGAKYTFLNSGSKTIDIHILDKNSDYDTFDFRNIIFEH
YTNEIFISFDNQGGFVISILNNATSEAANINVFRKNMTSLDSSGSLIYLPSGDIYHIS
DIYKMSRGRKSFKLNVEKKPDIDDIINVAILETSYLQIKKIPNNDDSDYILCLDNPNL
SSYTLNFNDLSGYISSLWDNIRGSFTPFHKNTVNIAPNEKKYISLIGLDKLSFNIDVF
RQALEVKNKNSYKISKFTWETYGDIVVSPEDRISHLELDGFNYFSQPELDTPISDSFS
YLYDNFQIVDSDVHIKLLHLNRETKQITPHRIILKRYFIDSFAKTSITDREKNIYPVI
CDSPDHFTSDIYRHPFRIVLGNKTLYPSEELVKFISTSKEYLSNMDVINNVIVPQKTT
KKNKLSIVSLNSNIKNDIVLSGVMTGTSKIFHLNNSGDLLLTTSKTHGGGVVVIFKDF
INNWWKYNLTLITVPIDNKLSDNRINITPMGIKIQETVSGNDRLFFYPTPLKNGCFIL
HNPLYSNSFPSLYSHELFDLIEAYRNPTYSYLQNNIINRYIHTVSEYAGKDGIANMSL
SIYAYSTCRFWSKESVAVGDTIKLSNYEHIEFSFNSFSKDYFREQNSDIYKIFFKIAS
SSNSVVVDKNTLTQKNFLENNTFFSITGIDESLYEKHIIFITLKVIVPSKK"
gene <65565..>65789
/locus_tag="CDCO157_RS27855"
/old_locus_tag="CDCO157_A0064"
/pseudo
CDS <65565..>65789
/locus_tag="CDCO157_RS27855"
/old_locus_tag="CDCO157_A0064"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012477168.1"
/note="incomplete; partial in the middle of a contig;
missing N-terminus and C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS3 family transposase"
gene complement(65782..>66027)
/locus_tag="CDCO157_RS32645"
/pseudo
CDS complement(65782..>66027)
/locus_tag="CDCO157_RS32645"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000544830.1"
/GO_function="GO:0005524 - ATP binding [Evidence IEA]"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="ATP-binding protein"
gene complement(<66034..66285)
/locus_tag="CDCO157_RS32650"
/pseudo
CDS complement(<66034..66285)
/locus_tag="CDCO157_RS32650"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076612086.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - transposition, DNA-mediated
[Evidence IEA]"
/note="incomplete; partial in the middle of a contig;
missing C-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="transposase"
gene <66342..67730
/locus_tag="CDCO157_RS27865"
/old_locus_tag="CDCO157_A0065A"
/pseudo
CDS <66342..67730
/locus_tag="CDCO157_RS27865"
/old_locus_tag="CDCO157_A0065A"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_490592.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_function="GO:0003678 - DNA helicase activity [Evidence
IEA]"
/GO_function="GO:0005524 - ATP binding [Evidence IEA]"
/GO_function="GO:0016818 - hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides
[Evidence IEA]"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="conjugative transfer relaxase/helicase TraI"
gene 67750..68496
/gene="traX"
/locus_tag="CDCO157_RS27870"
/old_locus_tag="CDCO157_A0066"
CDS 67750..68496
/gene="traX"
/locus_tag="CDCO157_RS27870"
/old_locus_tag="CDCO157_A0066"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052669.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="conjugal transfer pilus acetylase TraX"
/protein_id="WP_000205762.1"
/translation="MTTDNTNTTRNDSLAARTDTWLQSLLVWSPGQRDIIKTVALVLM
VLDHANRILHLDQTWMFLAGRGAFPLFALVWGLNLSRHAHIRQSAINRLWGWGIIAQF
AYYLAGFPWYEGNILFAFAVAAQVLTWCETRSGWRTAAAILLMALWGPLSGTSYGIAG
LLMLAVSHRLYRAEDRTERLVLVACLLAVIPALNLASSDAAAVAGLVMTVLTVGLVSC
AGKSLPRFWPGDFFPTFYGCHLAVLGILAL"
gene 68555..69415
/locus_tag="CDCO157_RS27875"
/old_locus_tag="CDCO157_A0067"
CDS 68555..69415
/locus_tag="CDCO157_RS27875"
/old_locus_tag="CDCO157_A0067"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052670.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="alpha/beta hydrolase"
/protein_id="WP_000704522.1"
/translation="MKITDHKLSEGIALTFRVPEGNIKHPLIILCHGFCGIRNVLLPC
FANAFTEAGFATITFDYRGFGESDGERGRLVPAMQTEDIISVINWAEKQECIDNQRIG
LWGTSLGGGHVFSAAAQDQRVKCIVSQLAFADGDVLVTGEMNESERASFLSTLNKMAE
KKKNTGKEMFVGVTRVLSDDESKVFFEKIKARHPEMDIKIPFLTVMETLQYKPAESAA
SVQCPVLVVIAGQDSVNPPEQGRALYDAVASGTKELYEEADACHYDIYEGAFFERVVA
VQTQWFKQYL"
gene 69518..70078
/locus_tag="CDCO157_RS27880"
/old_locus_tag="CDCO157_A0068"
CDS 69518..70078
/locus_tag="CDCO157_RS27880"
/old_locus_tag="CDCO157_A0068"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052671.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="fertility inhibition protein FinO"
/protein_id="WP_000840472.1"
/translation="MAEQKRPVLTLKRKTEGETPVRSRKTIINVTTPPKWKVKKQKLA
EKAAREAELAAKKAQARQALSIYLNLPTQDEAVNTLKPWWPGLFDGDTPRLLACGIRD
VLLEDVAQRNIPLSHKKLRRALKAITRSESYLCAMKAGACRYDTEGYVTEHISQEEEA
YAAARLDKIRRQNRIKAELQAVLDEK"
gene 70211..70423
/locus_tag="CDCO157_RS27885"
/old_locus_tag="CDCO157_A0069"
CDS 70211..70423
/locus_tag="CDCO157_RS27885"
/old_locus_tag="CDCO157_A0069"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_958725.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="ANR family transcriptional regulator"
/protein_id="WP_001302189.1"
/translation="MNGFRNSSRNGQVWRYQRAGSRAVILEVSGRWMEAAEAWRRAAG
VAPRTDWQQFARKRAEHCHRRCRGRG"
gene 70668..71129
/locus_tag="CDCO157_RS27890"
/old_locus_tag="CDCO157_A0070"
CDS 70668..71129
/locus_tag="CDCO157_RS27890"
/old_locus_tag="CDCO157_A0070"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052672.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="thermonuclease family protein"
/protein_id="WP_001233853.1"
/translation="MRKYIPLVLFIFSWPVLCADIHGRVVRVLDGDTIEVMDSRKAVR
IRLVNIDAPEKKQDYGRWSTDMMKSLVAGKTVTVTYFQRDRYGRMLGQVYAPDGMNVN
QFMVRAGAAWVYEQYNTDPVLPVLQNEARQQKRGLWSDADPVPPWIWRHRK"
gene 71175..71384
/gene="hha"
/locus_tag="CDCO157_RS27895"
/old_locus_tag="CDCO157_A0071"
CDS 71175..71384
/gene="hha"
/locus_tag="CDCO157_RS27895"
/old_locus_tag="CDCO157_A0071"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_958726.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hemolysin expression modulator Hha"
/protein_id="WP_001302200.1"
/translation="MEKTKQEWLYQLRRCSSVNTLEKIIHKNRDSLSTSERESFNSAA
DHRLAELITGKLYDRIPKEIWKYVR"
gene 71422..71760
/locus_tag="CDCO157_RS27900"
/old_locus_tag="CDCO157_A0072"
CDS 71422..71760
/locus_tag="CDCO157_RS27900"
/old_locus_tag="CDCO157_A0072"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_858390.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_000766796.1"
/translation="MKLIIFILIVLIIAALLIRIILRSVNQHSPLLMQLHAAGIRTGD
AERILSGGEYDASHLRPERRRRDILLEEVLRQAGIPLLRSHDARKLLQMTGEWLNTTG
AAQQSPEHRS"
gene 72000..72254
/gene="repA"
/locus_tag="CDCO157_RS27905"
/old_locus_tag="CDCO157_A0073"
CDS 72000..72254
/gene="repA"
/locus_tag="CDCO157_RS27905"
/old_locus_tag="CDCO157_A0073"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052674.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="replication regulatory protein RepA"
/protein_id="WP_000083831.1"
/translation="MSQTENAVTSSSGAKRAYRKGNPLSDAEKQRLSVARKRASFKEV
KVFLEPKYKAMLMQMCHEDGLTQAEVLTALIKSEAQKRCV"
gene 72490..72564
/gene="tap"
/locus_tag="CDCO157_RS27910"
CDS 72490..72564
/gene="tap"
/locus_tag="CDCO157_RS27910"
/inference="COORDINATES: protein motif:HMM:TIGR03475.1"
/GO_function="GO:0003674 - molecular_function [Evidence
IEA]"
/GO_process="GO:0006276 - plasmid maintenance [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="RepA leader peptide Tap"
/protein_id="WP_001370046.1"
/translation="MLGKVQDFFLCSLLLRIVSAGWCD"
gene 72557..73414
/gene="repA"
/locus_tag="CDCO157_RS27915"
/old_locus_tag="CDCO157_A0074"
CDS 72557..73414
/gene="repA"
/locus_tag="CDCO157_RS27915"
/old_locus_tag="CDCO157_A0074"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052675.1"
/GO_process="GO:0006276 - plasmid maintenance [Evidence
IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="incFII family plasmid replication initiator
RepA"
/protein_id="WP_000130945.1"
/translation="MTDLQQTYYRQVKNPNPVFTPREGAGTLKFCEKLMEKAVGFTSR
FDFAIHVAHARSKGLRRRMPPVLRRRAIDALLQGLCFHYDPLANRVQCSITTLAIECG
LATESAAGKLSITRATRALTFLSELGLITYQTEYDPLIGCYIPTDITFTPALFAALDV
SEDAVAAARRSRVEWENRLRKKQGLDTLGMDELIAKAWRFVRERFRSYQTELKSRGIK
RARARRDAGRERQDIVTLVKRQLTREISEGRFTANREAVKREVERRVKERMILSRNRN
YSRLATASP"
gene 74327..74611
/locus_tag="CDCO157_RS27920"
/old_locus_tag="CDCO157_A0075"
CDS 74327..74611
/locus_tag="CDCO157_RS27920"
/old_locus_tag="CDCO157_A0075"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052676.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="ribbon-helix-helix domain-containing protein"
/protein_id="WP_001178089.1"
/translation="MQMKNNTAQATKVITAHVPLPMADKVDQMAARLERSRGWVIKQA
LSAWLAQEEERNRLTLEALDDVTSGQVIDHQAVQAWADSLSTDNPLPVPR"
gene 74611..74886
/locus_tag="CDCO157_RS27925"
/old_locus_tag="CDCO157_A0076"
CDS 74611..74886
/locus_tag="CDCO157_RS27925"
/old_locus_tag="CDCO157_A0076"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052677.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="type II toxin-antitoxin system RelE/ParE family
toxin"
/protein_id="WP_000421248.1"
/translation="MELKWSSKALSDLARLYDFLVLASKPAAARTVQSLTQAPVILLT
HPRMGEQLFQFEPREVRRIFAGEYEIRYELNGQTIYVLRLWHTRENR"
gene 74981..75187
/locus_tag="CDCO157_RS27930"
/old_locus_tag="CDCO157_A0077"
CDS 74981..75187
/locus_tag="CDCO157_RS27930"
/old_locus_tag="CDCO157_A0077"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052678.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_001105064.1"
/translation="MNYDEITKITAERISDYMTEAVNTDSIAVAEMFHNAAWGVRTLW
FELVTKIDIDIHKKNRYASYDLDR"
gene complement(<75287..>75502)
/locus_tag="CDCO157_RS28515"
/old_locus_tag="CDCO157_A0077A"
/pseudo
CDS complement(<75287..>75502)
/locus_tag="CDCO157_RS28515"
/old_locus_tag="CDCO157_A0077A"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_013747467.1"
/GO_function="GO:0003677 - DNA binding [Evidence IEA]"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/GO_process="GO:0006313 - transposition, DNA-mediated
[Evidence IEA]"
/note="incomplete; partial in the middle of a contig;
missing N-terminus and C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="transposase"
gene complement(75546..>76112)
/locus_tag="CDCO157_RS30780"
/old_locus_tag="CDCO157_A0077B"
/pseudo
CDS complement(75546..>76112)
/locus_tag="CDCO157_RS30780"
/old_locus_tag="CDCO157_A0077B"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076611998.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="incomplete; partial in the middle of a contig;
missing N-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS3-like element IS600 family transposase"
gene complement(<76112..76528)
/locus_tag="CDCO157_RS27945"
/old_locus_tag="CDCO157_A0078"
/pseudo
CDS complement(<76112..76528)
/locus_tag="CDCO157_RS27945"
/old_locus_tag="CDCO157_A0078"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_013747467.1"
/note="incomplete; partial in the middle of a contig;
missing C-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS91 family transposase"
gene complement(76528..76713)
/locus_tag="CDCO157_RS27950"
/old_locus_tag="CDCO157_A0078A"
CDS complement(76528..76713)
/locus_tag="CDCO157_RS27950"
/old_locus_tag="CDCO157_A0078A"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/codon_start=1
/transl_table=11
/product="hypothetical protein"
/protein_id="WP_001302179.1"
/translation="MDVRNKKLVFWFVRVDDEGYPEIARCTEREFATILAGISAGGMY
CPECGTVHWPDGVPPPF"
gene 76890..79100
/gene="katP"
/locus_tag="CDCO157_RS27955"
/old_locus_tag="CDCO157_A0078B"
CDS 76890..79100
/gene="katP"
/locus_tag="CDCO157_RS27955"
/old_locus_tag="CDCO157_A0078B"
/EC_number="1.11.1.21"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_000592771.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="catalase/peroxidase KatP"
/protein_id="WP_000592771.1"
/translation="MIKKTLPVLILLALSGSFSTAVAADKKETQNFYYPETLDLTPLR
LHSPESNPWGADFDYATRFQQLDMEALKKDIKDLLTTSQDWWPADYGHYGPFFIRMAW
HGAGTYRTYDGRGGASGGQQRFEPLNSWPDNVNLDKARRLLWPVKKKYGSSISWGDLM
VLTGNVALESMGFKTLGFAGGREDDWESDLVYWGPDNKPLADNRDKNGKLQKPLAATQ
MGLIYVNPEGPGGKPDPLASAKDIREAFSRMAMDDEETVALIAGGHTFGKAHGAASPE
KCIGAGPDGAPVEEQGLGWKNKCGTGNGKYTITSGLEGAWSTSPTQFTMQYLKNLYKY
EWELHKSPAGAYQWKPKKAANIVQDAHDPSVLHPLMMFTTDIALKVDPEYKKITTRFL
NDPKAFEQAFARAWFKLTHRDMGPAARYLGNEVPAESFIWQDPLPAADYTMIDGKDIK
SLKEQVMDLGIPASELIKTAWASASTFRVTDYRGGNNGARIRLQPEINWEVNEPEKLK
KVLASLTSLQREFNKKQSDGKKVSLADLIVLSGNAAIEDAARKAGVELEIPFTPGRTD
ASQEQTDVASFSVLEPTADGFRNYYSKSRSHISPVESLIDKASQLDLTVPEMTALLGG
LRVMDINTNNSSLGVFTDTPGVLDNKFFVNLLDMSTRWSKADKEDTYNGFDRKTGALK
WKASSVDLIFSSNPELRAVAEVYASDDARNKFIHDFVKSWNKVMNSDRFDLNNK"
gene 79144..79533
/locus_tag="CDCO157_RS27960"
/old_locus_tag="CDCO157_A0078C"
CDS 79144..79533
/locus_tag="CDCO157_RS27960"
/old_locus_tag="CDCO157_A0078C"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_016242783.1"
/GO_component="GO:0042597 - periplasmic space [Evidence
IEA]"
/GO_function="GO:0005506 - iron ion binding [Evidence
IEA]"
/GO_function="GO:0009055 - electron transfer activity
[Evidence IEA]"
/GO_function="GO:0020037 - heme binding [Evidence IEA]"
/GO_process="GO:0022900 - electron transport chain
[Evidence IEA]"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="cytochrome b562"
/protein_id="WP_001172748.1"
/translation="MQKSNKVIISCGMALYFLCGGITVAEELDESMQVLARNMSVLQS
SMDKKELLEALDRMDDAVDESMKRLPESISPADEEGKNDYIKELQKLEKEIMLAKQKV
LSGQLSDIPDSVNKMNKIRVEGHDKFR"
gene <79590..80578
/locus_tag="CDCO157_RS27965"
/old_locus_tag="CDCO157_A0079"
/pseudo
CDS <79590..80578
/locus_tag="CDCO157_RS27965"
/old_locus_tag="CDCO157_A0079"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_086558238.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="frameshifted; incomplete; partial in the middle of
a contig; missing N-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS3 family transposase"
misc_feature 79646..79762
/locus_tag="CDCO157_RS27965"
/old_locus_tag="CDCO157_A0079"
/inference="COORDINATES: nucleotide
motif:Rfam:14.4:RF01497"
/inference="COORDINATES: profile:INFERNAL:1.1.4"
/note="AL1L pseudoknot; Derived by automated computational
analysis using gene prediction method: cmsearch."
/pseudo
/db_xref="RFAM:RF01497"
gene 80759..84661
/gene="espP"
/locus_tag="CDCO157_RS27970"
/old_locus_tag="CDCO157_A0080"
CDS 80759..84661
/gene="espP"
/locus_tag="CDCO157_RS27970"
/old_locus_tag="CDCO157_A0080"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052685.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="serine protease autotransporter EspP"
/protein_id="WP_001034100.1"
/translation="MNKIYSLKYSHITGGLIAVSELSGRVSSRATGKKKHKRILALCF
LGLLQSSYSFASQMDISNFYIRDYMDFAQNKGIFQAGATNIEIVKKDGSTLKLPEVPF
PDFSPVANKGSTTSIGGAYSITATHNTKNHHSVATQNWGNSTYKQTDWNTSHPDFAVS
RLDKFVVETRGATEGADISLSKQQALERYGVNYKGEKKLIAFRAGSGVVSVKKNGRIT
PFNEVSYKPEMLNGSFVHIDDWSGWLILTNNQFDEFNNIASQGDSGSALFVYDNQKKK
WVVAGTVWGIYNYANGKNHAAYSKWNQTTIDNLKNKYSYNVDMSGAQVATIENGKLTG
TGSDTTDIKNKDLIFTGGGDILLKSSFDNGAGGLVFNDKKTYRVNGDDFTFKGAGVDT
RNGSTVEWNIRYDNKDNLHKIGDGTLDVRKTQNTNLKTGEGLVILGAEKTFNNIYITS
GDGTVRLNAENALSGGEYNGIFFAKNGGTLDLNGYNQSFNKIAATDSGAVITNTSTKK
SILSLNNTADYIYHGNINGNLDVLQHHETKKENRRLILDGGVDTTNDISLRNTQLSMQ
GHATEHAIYRDGAFSCSLPAPMRFLCGSDYVAGMQNTEADAVKQNGNAYKTNNAVSDL
SQPDWETGTFRFGTLHLENSDFSVGRNANVIGDIQASKSNITIGDTTAYIDLHAGKNI
TGDGFGFRQNIVRGNSQGETLFTGGITAEDSTIVIKDKAKALFSNYVYLLNTKATIEN
GADVTTQSGMFSTSDISISGNLSMTGNPDKDNKFEPSIYLNDASYLLTDDSARLVAKN
KASVVGDIHSTKSASIMFGHDESDLSQLSDRTSKGLALGLLGGFDVSYRGSVNAPSAS
ATMNNTWWQLTGDSALKTLKSTNSMVYFTDSANNKKFHTLTVDELATSNSAYAMRTNL
SESDKLEVKKHLSGENNILLVDFLQKPTPEKQLNIELVSAPKDTNENVFKASKQTIGF
SDVTPVITTRETDDKITWSLTGYNTVANKEATRNAAALFSVDYKAFLNEVNNLNKRMG
DLRDINGEAGAWARIMSGTGSASGGFSDNYTHVQVGVDKKHELDGLDLFTGFTVTHTD
SSASADVFSGKTKSVGAGLYASAMFDSGAYIDLIGKYVHHDNEYTATFAGLGTRDYST
HSWYAGAEAGYRYHVTEDAWIEPQAELVYGSVSGKQFAWKDQGMHLSMKDKDYNPLIG
RTGVDVGKSFSGKDWKVTARAGLGYQFDLLANGETVLRDASGEKRIKGEKDSRMLMSV
GLNAEIRDNVRFGLEFEKSAFGKYNVDNAVNANFRYSF"
gene complement(<84917..85398)
/locus_tag="CDCO157_RS31765"
/pseudo
CDS complement(<84917..85398)
/locus_tag="CDCO157_RS31765"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012477181.1"
/GO_function="GO:0004803 - transposase activity [Evidence
IEA]"
/note="frameshifted; internal stop; incomplete; partial in
the middle of a contig; missing C-terminus; Derived by
automated computational analysis using gene prediction
method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="IS1 family transposase"
gene 86839..87660
/locus_tag="CDCO157_RS27990"
/old_locus_tag="CDCO157_A0082"
CDS 86839..87660
/locus_tag="CDCO157_RS27990"
/old_locus_tag="CDCO157_A0082"
/EC_number="3.-.-.-"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001302199.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="polysaccharide deacetylase family protein"
/protein_id="WP_001302199.1"
/translation="MLNARHLPVLMYHHVSRCPGLVTLSPETFCEQMKWLADNNWRTV
TSAELEYFYQGGTLPRKSVMLTFDDGYLDNWLRAWPVLKEYNLHAHIFLITGLIGKGN
VRSRQEQEYSHRDCERLIADNRSDEVMLRWSEVREMRDSGLVEFHVHTHSHKRWDRLS
VSRAEQCRLMKEDILVGKQCLTEKLGFCSSHLCWPEGYYNRDYINLAGKLGFSYLYTT
ERRMNCPENGSLRIGRISTKEREHSGWLKRRLFYYTTPLFSSVLALHKGPRLPDN"
gene 87660..88766
/locus_tag="CDCO157_RS27995"
/old_locus_tag="CDCO157_A0083"
CDS 87660..88766
/locus_tag="CDCO157_RS27995"
/old_locus_tag="CDCO157_A0083"
/EC_number="2.4.-.-"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052687.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="glycosyltransferase family 4 protein"
/protein_id="WP_000975743.1"
/translation="MMKILFTESSSDIGGQELQALAQMTALQKQGHSVLLACREKSKI
APEARKRGHDVTFIPFRNSLHLPSILRLRRIIGEFKPDLVICHSGHDSNIAGLSRLIC
CHRFSIVRQKTYITRKTRTFSLNYLCDFIVVPSSAMMAHLMAEGVRTPVTVIPPGFDW
PALHNEAMRPLPLHIHAWAASADNVPLIVQVGMLRPEKGHEFMLRVLYQLKMEGKSFR
WLVVGAGREEYEARLRQQTEHLGMSGDVLMAGALFPALPVYRIASVVVMPSENEAFGM
VLAEASVSGVPVIASETGGIPDVIQKNVTGTLLPVGDVSAWTGALRDFLSRPERFRMM
AASAREDIEYRFDINRTAQIIVSLASQAKGKCNR"
gene 88856..90577
/gene="cptA"
/locus_tag="CDCO157_RS28000"
/old_locus_tag="CDCO157_A0084"
CDS 88856..90577
/gene="cptA"
/locus_tag="CDCO157_RS28000"
/old_locus_tag="CDCO157_A0084"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052688.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="phosphoethanolamine transferase CptA"
/protein_id="WP_000550559.1"
/translation="MHLNTGQNRPTFSWSALGWAIFYFGFFSTLLQVIIFSSGYSGTN
GIRDSLLFSCLWLIPVFLYPDRIKIIAAVVGFILWGTSLAALCYYFLYGHEFSQSVLF
VMFETNAREAGEYFSQYFSLKLLLISLVYTAVSVFLWTRLRPVYIPLPWRRIVSFLLL
YALLLHPVVLKSLIRQEPLNDTLGKLASRMEPAAPWQFVSSYYQYHQQLNALTTFLNE
NSALPPLGNLRDESGERPRTLVLVIGESTQRERMSLYGYLRETTPELDALRKTDPGLT
VFNNVVASRPYTIEALQQALTFANEKNPDLYLTQPSLMNMMKQAGYKTFWITNQQTIT
ARNTMLTVFSRQTDRQYYMNQQRTQSAREYDTNVLKPFREVLNDPAPKKLIIVHLLGT
HIKYKYRYPEGQGRFDGITGHIPTGLNAKELEVYNDYDNANLFNDHVVASLIKDFRAT
APDGFLLYFSDHGEEVYDTPPYKTQGRNEDNPTRPMYTVPFLLWTSEKWHAAHPRDFS
QYVDRKYSLAELIHTWSDLAGLTYDGYDPTRSLVNPQFRETTRWIGNPYKKNGLTDFD
TLPYGEP"
gene 90651..91649
/gene="lpxM"
/locus_tag="CDCO157_RS28005"
/old_locus_tag="CDCO157_A0085"
/gene_synonym="msbB"
CDS 90651..91649
/gene="lpxM"
/locus_tag="CDCO157_RS28005"
/old_locus_tag="CDCO157_A0085"
/gene_synonym="msbB"
/EC_number="2.3.1.243"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_052689.1"
/GO_function="GO:0016746 - acyltransferase activity
[Evidence IEA]"
/GO_process="GO:0009245 - lipid A biosynthetic process
[Evidence IEA]"
/note="LpxM is lauroyl-Kdo(2)-lipid IV(A)
myristoyltransferase, an enzyme characterized in
Escherichia coli and involved in biosynthesis of the form
of lipid A found in that species and some closely related
species; Derived by automated computational analysis using
gene prediction method: Protein Homology."
/codon_start=1
/transl_table=11
/product="lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase"
/protein_id="WP_001302181.1"
/translation="MVPPSAVLCYHNEISRQIPVNMKNIRTEFIPRFNLTLCFPRYWM
TWTGIGIICVFAMVPPALRDPLLGKLGMLVGRLGKSARQRALINLSLCFPEYSDKEKE
NIVDAMFATASMAVVLMAELALSGPDKISHRIRWNGLEIVEKMAQNNEKVIFLVPHAW
GVDIPAMLMAASGRKMAAMFHNQRNPVVDYVWNSVRRRFGGKLHARNDGIASFVRSVR
QGYWGYYLPDQDHGPEFSEFADFFATYKATLPVIGRLSRISGARIIPLFPVYDGKTHH
LTIHVSPPLAIRQKSDAHIARQINEVVENFVRPHPEQYTWILKLLKTRKEGEEDPY"
gene 91702..>91890
/locus_tag="CDCO157_RS32665"
/pseudo
CDS 91702..>91890
/locus_tag="CDCO157_RS32665"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_012767718.1"
/note="internal stop; incomplete; partial in the middle of
a contig; missing C-terminus; Derived by automated
computational analysis using gene prediction method:
Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="hypothetical protein"
gene complement(<91994..92080)
/locus_tag="CDCO157_RS32770"
/pseudo
CDS complement(<91994..92080)
/locus_tag="CDCO157_RS32770"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_076612015.1"
/note="incomplete; partial in the middle of a contig;
missing C-terminus; Derived by automated computational
analysis using gene prediction method: Protein Homology."
/pseudo
/codon_start=1
/transl_table=11
/product="transposase"
CONTIG join(CP001926.1:1..92728)
//
